GO Enrichment Analysis of Co-expressed Genes with
AT3G50790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 2.17E-13 |
| 8 | GO:0090391: granum assembly | 4.55E-09 |
| 9 | GO:0009735: response to cytokinin | 6.12E-09 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 6.15E-09 |
| 11 | GO:0010027: thylakoid membrane organization | 7.34E-06 |
| 12 | GO:0006655: phosphatidylglycerol biosynthetic process | 4.18E-05 |
| 13 | GO:0009772: photosynthetic electron transport in photosystem II | 7.88E-05 |
| 14 | GO:0010196: nonphotochemical quenching | 7.88E-05 |
| 15 | GO:0042759: long-chain fatty acid biosynthetic process | 1.46E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 1.46E-04 |
| 17 | GO:1902458: positive regulation of stomatal opening | 1.46E-04 |
| 18 | GO:0034337: RNA folding | 1.46E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.46E-04 |
| 20 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 1.46E-04 |
| 21 | GO:0005980: glycogen catabolic process | 1.46E-04 |
| 22 | GO:0010206: photosystem II repair | 1.56E-04 |
| 23 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.88E-04 |
| 24 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.22E-04 |
| 25 | GO:0009773: photosynthetic electron transport in photosystem I | 2.59E-04 |
| 26 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.99E-04 |
| 27 | GO:0010541: acropetal auxin transport | 3.33E-04 |
| 28 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.33E-04 |
| 29 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.33E-04 |
| 30 | GO:0006568: tryptophan metabolic process | 3.33E-04 |
| 31 | GO:0010289: homogalacturonan biosynthetic process | 3.33E-04 |
| 32 | GO:0043255: regulation of carbohydrate biosynthetic process | 3.33E-04 |
| 33 | GO:0034599: cellular response to oxidative stress | 3.40E-04 |
| 34 | GO:0010207: photosystem II assembly | 3.85E-04 |
| 35 | GO:0006518: peptide metabolic process | 5.47E-04 |
| 36 | GO:0048281: inflorescence morphogenesis | 5.47E-04 |
| 37 | GO:1902448: positive regulation of shade avoidance | 5.47E-04 |
| 38 | GO:0010160: formation of animal organ boundary | 5.47E-04 |
| 39 | GO:0016998: cell wall macromolecule catabolic process | 6.43E-04 |
| 40 | GO:1901332: negative regulation of lateral root development | 7.83E-04 |
| 41 | GO:0051513: regulation of monopolar cell growth | 7.83E-04 |
| 42 | GO:0071484: cellular response to light intensity | 7.83E-04 |
| 43 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 7.83E-04 |
| 44 | GO:0010148: transpiration | 7.83E-04 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.83E-04 |
| 46 | GO:0010306: rhamnogalacturonan II biosynthetic process | 7.83E-04 |
| 47 | GO:0009306: protein secretion | 8.29E-04 |
| 48 | GO:0048443: stamen development | 8.29E-04 |
| 49 | GO:0045727: positive regulation of translation | 1.04E-03 |
| 50 | GO:0000302: response to reactive oxygen species | 1.27E-03 |
| 51 | GO:0010236: plastoquinone biosynthetic process | 1.31E-03 |
| 52 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.31E-03 |
| 53 | GO:0010337: regulation of salicylic acid metabolic process | 1.61E-03 |
| 54 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.61E-03 |
| 55 | GO:0060918: auxin transport | 1.61E-03 |
| 56 | GO:0010019: chloroplast-nucleus signaling pathway | 1.93E-03 |
| 57 | GO:1901259: chloroplast rRNA processing | 1.93E-03 |
| 58 | GO:0042372: phylloquinone biosynthetic process | 1.93E-03 |
| 59 | GO:0070370: cellular heat acclimation | 2.27E-03 |
| 60 | GO:0010103: stomatal complex morphogenesis | 2.27E-03 |
| 61 | GO:0006605: protein targeting | 2.63E-03 |
| 62 | GO:2000070: regulation of response to water deprivation | 2.63E-03 |
| 63 | GO:0048564: photosystem I assembly | 2.63E-03 |
| 64 | GO:0032544: plastid translation | 3.00E-03 |
| 65 | GO:0001558: regulation of cell growth | 3.00E-03 |
| 66 | GO:0048589: developmental growth | 3.40E-03 |
| 67 | GO:0006535: cysteine biosynthetic process from serine | 4.23E-03 |
| 68 | GO:0006032: chitin catabolic process | 4.23E-03 |
| 69 | GO:0043085: positive regulation of catalytic activity | 4.67E-03 |
| 70 | GO:0010152: pollen maturation | 5.13E-03 |
| 71 | GO:0008361: regulation of cell size | 5.13E-03 |
| 72 | GO:0006006: glucose metabolic process | 5.60E-03 |
| 73 | GO:0045454: cell redox homeostasis | 5.73E-03 |
| 74 | GO:0010540: basipetal auxin transport | 6.09E-03 |
| 75 | GO:0009266: response to temperature stimulus | 6.09E-03 |
| 76 | GO:0019253: reductive pentose-phosphate cycle | 6.09E-03 |
| 77 | GO:0010053: root epidermal cell differentiation | 6.59E-03 |
| 78 | GO:0009825: multidimensional cell growth | 6.59E-03 |
| 79 | GO:0010167: response to nitrate | 6.59E-03 |
| 80 | GO:0010025: wax biosynthetic process | 7.10E-03 |
| 81 | GO:0051017: actin filament bundle assembly | 7.63E-03 |
| 82 | GO:0019344: cysteine biosynthetic process | 7.63E-03 |
| 83 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.63E-03 |
| 84 | GO:0051302: regulation of cell division | 8.18E-03 |
| 85 | GO:0016114: terpenoid biosynthetic process | 8.73E-03 |
| 86 | GO:0030245: cellulose catabolic process | 9.30E-03 |
| 87 | GO:0001944: vasculature development | 9.89E-03 |
| 88 | GO:0042744: hydrogen peroxide catabolic process | 1.04E-02 |
| 89 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.11E-02 |
| 90 | GO:0042335: cuticle development | 1.17E-02 |
| 91 | GO:0006662: glycerol ether metabolic process | 1.24E-02 |
| 92 | GO:0048868: pollen tube development | 1.24E-02 |
| 93 | GO:0009958: positive gravitropism | 1.24E-02 |
| 94 | GO:0015986: ATP synthesis coupled proton transport | 1.30E-02 |
| 95 | GO:0009639: response to red or far red light | 1.64E-02 |
| 96 | GO:0009567: double fertilization forming a zygote and endosperm | 1.64E-02 |
| 97 | GO:0006412: translation | 1.68E-02 |
| 98 | GO:0009658: chloroplast organization | 1.97E-02 |
| 99 | GO:0042254: ribosome biogenesis | 2.01E-02 |
| 100 | GO:0010411: xyloglucan metabolic process | 2.09E-02 |
| 101 | GO:0009860: pollen tube growth | 2.12E-02 |
| 102 | GO:0030244: cellulose biosynthetic process | 2.25E-02 |
| 103 | GO:0010311: lateral root formation | 2.33E-02 |
| 104 | GO:0010218: response to far red light | 2.41E-02 |
| 105 | GO:0080167: response to karrikin | 2.44E-02 |
| 106 | GO:0009631: cold acclimation | 2.49E-02 |
| 107 | GO:0048527: lateral root development | 2.49E-02 |
| 108 | GO:0016051: carbohydrate biosynthetic process | 2.66E-02 |
| 109 | GO:0009637: response to blue light | 2.66E-02 |
| 110 | GO:0030001: metal ion transport | 2.92E-02 |
| 111 | GO:0009926: auxin polar transport | 3.19E-02 |
| 112 | GO:0009640: photomorphogenesis | 3.19E-02 |
| 113 | GO:0042546: cell wall biogenesis | 3.28E-02 |
| 114 | GO:0009965: leaf morphogenesis | 3.47E-02 |
| 115 | GO:0006855: drug transmembrane transport | 3.56E-02 |
| 116 | GO:0009664: plant-type cell wall organization | 3.75E-02 |
| 117 | GO:0009809: lignin biosynthetic process | 3.94E-02 |
| 118 | GO:0006364: rRNA processing | 3.94E-02 |
| 119 | GO:0008152: metabolic process | 3.96E-02 |
| 120 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.04E-02 |
| 121 | GO:0009733: response to auxin | 4.32E-02 |
| 122 | GO:0006096: glycolytic process | 4.44E-02 |
| 123 | GO:0042545: cell wall modification | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0016851: magnesium chelatase activity | 2.23E-08 |
| 6 | GO:0019843: rRNA binding | 6.95E-07 |
| 7 | GO:0005528: FK506 binding | 2.25E-05 |
| 8 | GO:0004130: cytochrome-c peroxidase activity | 4.18E-05 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.73E-05 |
| 10 | GO:0004645: phosphorylase activity | 1.46E-04 |
| 11 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.46E-04 |
| 12 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.46E-04 |
| 13 | GO:0008184: glycogen phosphorylase activity | 1.46E-04 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.46E-04 |
| 15 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 1.46E-04 |
| 16 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 1.46E-04 |
| 17 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.46E-04 |
| 18 | GO:0016630: protochlorophyllide reductase activity | 3.33E-04 |
| 19 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.33E-04 |
| 20 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.33E-04 |
| 21 | GO:0004751: ribose-5-phosphate isomerase activity | 5.47E-04 |
| 22 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.47E-04 |
| 23 | GO:0042277: peptide binding | 1.04E-03 |
| 24 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.04E-03 |
| 25 | GO:0004659: prenyltransferase activity | 1.04E-03 |
| 26 | GO:0010011: auxin binding | 1.04E-03 |
| 27 | GO:0019199: transmembrane receptor protein kinase activity | 1.04E-03 |
| 28 | GO:0004040: amidase activity | 1.31E-03 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 1.31E-03 |
| 30 | GO:0030170: pyridoxal phosphate binding | 1.52E-03 |
| 31 | GO:0016688: L-ascorbate peroxidase activity | 1.61E-03 |
| 32 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.61E-03 |
| 33 | GO:0004124: cysteine synthase activity | 1.93E-03 |
| 34 | GO:0051920: peroxiredoxin activity | 1.93E-03 |
| 35 | GO:0015631: tubulin binding | 1.93E-03 |
| 36 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.63E-03 |
| 37 | GO:0016209: antioxidant activity | 2.63E-03 |
| 38 | GO:0004568: chitinase activity | 4.23E-03 |
| 39 | GO:0008047: enzyme activator activity | 4.23E-03 |
| 40 | GO:0047372: acylglycerol lipase activity | 4.67E-03 |
| 41 | GO:0031072: heat shock protein binding | 5.60E-03 |
| 42 | GO:0009982: pseudouridine synthase activity | 5.60E-03 |
| 43 | GO:0004565: beta-galactosidase activity | 5.60E-03 |
| 44 | GO:0010329: auxin efflux transmembrane transporter activity | 5.60E-03 |
| 45 | GO:0008266: poly(U) RNA binding | 6.09E-03 |
| 46 | GO:0004707: MAP kinase activity | 8.73E-03 |
| 47 | GO:0003735: structural constituent of ribosome | 8.81E-03 |
| 48 | GO:0005509: calcium ion binding | 9.08E-03 |
| 49 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 9.30E-03 |
| 50 | GO:0008810: cellulase activity | 9.89E-03 |
| 51 | GO:0003756: protein disulfide isomerase activity | 1.05E-02 |
| 52 | GO:0047134: protein-disulfide reductase activity | 1.11E-02 |
| 53 | GO:0005515: protein binding | 1.15E-02 |
| 54 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.24E-02 |
| 55 | GO:0050662: coenzyme binding | 1.30E-02 |
| 56 | GO:0004791: thioredoxin-disulfide reductase activity | 1.30E-02 |
| 57 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.43E-02 |
| 58 | GO:0016491: oxidoreductase activity | 1.55E-02 |
| 59 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.57E-02 |
| 60 | GO:0051015: actin filament binding | 1.57E-02 |
| 61 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.61E-02 |
| 62 | GO:0008483: transaminase activity | 1.72E-02 |
| 63 | GO:0003729: mRNA binding | 1.87E-02 |
| 64 | GO:0016168: chlorophyll binding | 1.94E-02 |
| 65 | GO:0004601: peroxidase activity | 1.97E-02 |
| 66 | GO:0016788: hydrolase activity, acting on ester bonds | 2.01E-02 |
| 67 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.09E-02 |
| 68 | GO:0030247: polysaccharide binding | 2.09E-02 |
| 69 | GO:0008236: serine-type peptidase activity | 2.17E-02 |
| 70 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.25E-02 |
| 71 | GO:0004222: metalloendopeptidase activity | 2.41E-02 |
| 72 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.83E-02 |
| 73 | GO:0050661: NADP binding | 2.92E-02 |
| 74 | GO:0004185: serine-type carboxypeptidase activity | 3.19E-02 |
| 75 | GO:0051287: NAD binding | 3.65E-02 |
| 76 | GO:0045330: aspartyl esterase activity | 4.24E-02 |
| 77 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.54E-02 |
| 78 | GO:0030599: pectinesterase activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 3 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 4 | GO:0009534: chloroplast thylakoid | 6.53E-35 |
| 5 | GO:0009507: chloroplast | 1.79E-34 |
| 6 | GO:0009579: thylakoid | 4.33E-25 |
| 7 | GO:0009570: chloroplast stroma | 1.02E-24 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.60E-24 |
| 9 | GO:0009941: chloroplast envelope | 3.21E-19 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 4.32E-18 |
| 11 | GO:0031977: thylakoid lumen | 1.44E-11 |
| 12 | GO:0010007: magnesium chelatase complex | 4.55E-09 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 5.16E-07 |
| 14 | GO:0019898: extrinsic component of membrane | 2.80E-06 |
| 15 | GO:0030095: chloroplast photosystem II | 1.29E-05 |
| 16 | GO:0009538: photosystem I reaction center | 1.02E-04 |
| 17 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.46E-04 |
| 18 | GO:0010287: plastoglobule | 1.60E-04 |
| 19 | GO:0005618: cell wall | 3.23E-04 |
| 20 | GO:0030093: chloroplast photosystem I | 3.33E-04 |
| 21 | GO:0009508: plastid chromosome | 3.41E-04 |
| 22 | GO:0009509: chromoplast | 5.47E-04 |
| 23 | GO:0033281: TAT protein transport complex | 5.47E-04 |
| 24 | GO:0005840: ribosome | 7.29E-04 |
| 25 | GO:0048046: apoplast | 8.62E-04 |
| 26 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.61E-03 |
| 27 | GO:0009295: nucleoid | 1.62E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.27E-03 |
| 29 | GO:0042644: chloroplast nucleoid | 3.40E-03 |
| 30 | GO:0031969: chloroplast membrane | 4.56E-03 |
| 31 | GO:0000311: plastid large ribosomal subunit | 5.13E-03 |
| 32 | GO:0032040: small-subunit processome | 5.13E-03 |
| 33 | GO:0015629: actin cytoskeleton | 9.89E-03 |
| 34 | GO:0009522: photosystem I | 1.30E-02 |
| 35 | GO:0009523: photosystem II | 1.37E-02 |
| 36 | GO:0009536: plastid | 1.40E-02 |
| 37 | GO:0010319: stromule | 1.72E-02 |
| 38 | GO:0005802: trans-Golgi network | 2.80E-02 |
| 39 | GO:0016020: membrane | 2.83E-02 |
| 40 | GO:0005768: endosome | 3.29E-02 |
| 41 | GO:0005856: cytoskeleton | 3.47E-02 |