co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006182: cGMP biosynthetic process	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
4	GO:0080056: petal vascular tissue pattern formation	0.00E+00
5	GO:0048312: intracellular distribution of mitochondria	0.00E+00
6	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
7	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
8	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
9	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
10	GO:0006983: ER overload response	0.00E+00
11	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
12	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
13	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
14	GO:0051553: flavone biosynthetic process	0.00E+00
15	GO:0043069: negative regulation of programmed cell death	8.94E-07
16	GO:0042742: defense response to bacterium	1.92E-06
17	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.67E-06
18	GO:0000187: activation of MAPK activity	4.39E-05
19	GO:0002239: response to oomycetes	4.39E-05
20	GO:0006468: protein phosphorylation	4.62E-05
21	GO:0052544: defense response by callose deposition in cell wall	5.22E-05
22	GO:0080142: regulation of salicylic acid biosynthetic process	7.81E-05
23	GO:0007166: cell surface receptor signaling pathway	9.26E-05
24	GO:0009617: response to bacterium	1.03E-04
25	GO:0009627: systemic acquired resistance	1.12E-04
26	GO:0018279: protein N-linked glycosylation via asparagine	1.22E-04
27	GO:0009620: response to fungus	1.23E-04
28	GO:0000162: tryptophan biosynthetic process	1.34E-04
29	GO:0006014: D-ribose metabolic process	1.76E-04
30	GO:0009759: indole glucosinolate biosynthetic process	1.76E-04
31	GO:0071456: cellular response to hypoxia	2.35E-04
32	GO:2000037: regulation of stomatal complex patterning	2.38E-04
33	GO:0006099: tricarboxylic acid cycle	2.40E-04
34	GO:0016192: vesicle-mediated transport	3.39E-04
35	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	3.55E-04
36	GO:0010365: positive regulation of ethylene biosynthetic process	3.55E-04
37	GO:0043547: positive regulation of GTPase activity	3.55E-04
38	GO:0051245: negative regulation of cellular defense response	3.55E-04
39	GO:1990641: response to iron ion starvation	3.55E-04
40	GO:0006422: aspartyl-tRNA aminoacylation	3.55E-04
41	GO:0033306: phytol metabolic process	3.55E-04
42	GO:0043687: post-translational protein modification	3.55E-04
43	GO:0010230: alternative respiration	3.55E-04
44	GO:0046244: salicylic acid catabolic process	3.55E-04
45	GO:0009968: negative regulation of signal transduction	3.55E-04
46	GO:0010266: response to vitamin B1	3.55E-04
47	GO:0006102: isocitrate metabolic process	3.89E-04
48	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.89E-04
49	GO:0010150: leaf senescence	4.29E-04
50	GO:0002229: defense response to oomycetes	5.34E-04
51	GO:0009821: alkaloid biosynthetic process	5.70E-04
52	GO:0009751: response to salicylic acid	6.60E-04
53	GO:0015914: phospholipid transport	7.72E-04
54	GO:0051645: Golgi localization	7.72E-04
55	GO:0007584: response to nutrient	7.72E-04
56	GO:0006101: citrate metabolic process	7.72E-04
57	GO:0043066: negative regulation of apoptotic process	7.72E-04
58	GO:0031349: positive regulation of defense response	7.72E-04
59	GO:0060151: peroxisome localization	7.72E-04
60	GO:0019441: tryptophan catabolic process to kynurenine	7.72E-04
61	GO:0006996: organelle organization	7.72E-04
62	GO:0002221: pattern recognition receptor signaling pathway	7.72E-04
63	GO:0009615: response to virus	8.54E-04
64	GO:0009682: induced systemic resistance	9.04E-04
65	GO:0010229: inflorescence development	1.17E-03
66	GO:0072661: protein targeting to plasma membrane	1.25E-03
67	GO:0010272: response to silver ion	1.25E-03
68	GO:0009062: fatty acid catabolic process	1.25E-03
69	GO:0051646: mitochondrion localization	1.25E-03
70	GO:0002230: positive regulation of defense response to virus by host	1.25E-03
71	GO:0090436: leaf pavement cell development	1.25E-03
72	GO:0002237: response to molecule of bacterial origin	1.31E-03
73	GO:0042343: indole glucosinolate metabolic process	1.47E-03
74	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.80E-03
75	GO:0006612: protein targeting to membrane	1.80E-03
76	GO:1902290: positive regulation of defense response to oomycetes	1.80E-03
77	GO:0006882: cellular zinc ion homeostasis	1.80E-03
78	GO:0000027: ribosomal large subunit assembly	1.82E-03
79	GO:0009863: salicylic acid mediated signaling pathway	1.82E-03
80	GO:0055114: oxidation-reduction process	1.98E-03
81	GO:0009814: defense response, incompatible interaction	2.41E-03
82	GO:0048830: adventitious root development	2.42E-03
83	GO:0010363: regulation of plant-type hypersensitive response	2.42E-03
84	GO:0000460: maturation of 5.8S rRNA	2.42E-03
85	GO:0006221: pyrimidine nucleotide biosynthetic process	2.42E-03
86	GO:0010107: potassium ion import	2.42E-03
87	GO:2000038: regulation of stomatal complex development	2.42E-03
88	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	2.42E-03
89	GO:0010227: floral organ abscission	2.63E-03
90	GO:0009306: protein secretion	2.86E-03
91	GO:0006097: glyoxylate cycle	3.09E-03
92	GO:0007029: endoplasmic reticulum organization	3.09E-03
93	GO:0018344: protein geranylgeranylation	3.09E-03
94	GO:0009697: salicylic acid biosynthetic process	3.09E-03
95	GO:0000470: maturation of LSU-rRNA	3.82E-03
96	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.82E-03
97	GO:0047484: regulation of response to osmotic stress	3.82E-03
98	GO:0061025: membrane fusion	3.88E-03
99	GO:0006952: defense response	4.10E-03
100	GO:0019252: starch biosynthetic process	4.16E-03
101	GO:0009626: plant-type hypersensitive response	4.34E-03
102	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.60E-03
103	GO:0000911: cytokinesis by cell plate formation	4.60E-03
104	GO:0009612: response to mechanical stimulus	4.60E-03
105	GO:0015031: protein transport	4.68E-03
106	GO:0010044: response to aluminum ion	5.44E-03
107	GO:1900057: positive regulation of leaf senescence	5.44E-03
108	GO:0006400: tRNA modification	5.44E-03
109	GO:1902074: response to salt	5.44E-03
110	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.32E-03
111	GO:0009819: drought recovery	6.32E-03
112	GO:0044550: secondary metabolite biosynthetic process	6.54E-03
113	GO:0006906: vesicle fusion	7.20E-03
114	GO:0009808: lignin metabolic process	7.25E-03
115	GO:0009699: phenylpropanoid biosynthetic process	7.25E-03
116	GO:0046686: response to cadmium ion	7.25E-03
117	GO:0006886: intracellular protein transport	7.94E-03
118	GO:0009414: response to water deprivation	8.10E-03
119	GO:0007338: single fertilization	8.22E-03
120	GO:0051865: protein autoubiquitination	8.22E-03
121	GO:0019432: triglyceride biosynthetic process	8.22E-03
122	GO:0010112: regulation of systemic acquired resistance	8.22E-03
123	GO:0008219: cell death	8.42E-03
124	GO:0071577: zinc II ion transmembrane transport	9.24E-03
125	GO:1900426: positive regulation of defense response to bacterium	9.24E-03
126	GO:0010205: photoinhibition	9.24E-03
127	GO:0008202: steroid metabolic process	9.24E-03
128	GO:0009641: shade avoidance	1.03E-02
129	GO:0006032: chitin catabolic process	1.03E-02
130	GO:0030148: sphingolipid biosynthetic process	1.14E-02
131	GO:0009684: indoleacetic acid biosynthetic process	1.14E-02
132	GO:0000038: very long-chain fatty acid metabolic process	1.14E-02
133	GO:0000272: polysaccharide catabolic process	1.14E-02
134	GO:0050832: defense response to fungus	1.16E-02
135	GO:0000266: mitochondrial fission	1.26E-02
136	GO:0002213: defense response to insect	1.26E-02
137	GO:0006887: exocytosis	1.27E-02
138	GO:0051707: response to other organism	1.38E-02
139	GO:0010588: cotyledon vascular tissue pattern formation	1.38E-02
140	GO:0030048: actin filament-based movement	1.38E-02
141	GO:0006626: protein targeting to mitochondrion	1.38E-02
142	GO:0048467: gynoecium development	1.50E-02
143	GO:0007030: Golgi organization	1.62E-02
144	GO:0070588: calcium ion transmembrane transport	1.62E-02
145	GO:0000165: MAPK cascade	1.68E-02
146	GO:0034976: response to endoplasmic reticulum stress	1.76E-02
147	GO:0006487: protein N-linked glycosylation	1.89E-02
148	GO:0080147: root hair cell development	1.89E-02
149	GO:2000377: regulation of reactive oxygen species metabolic process	1.89E-02
150	GO:0006874: cellular calcium ion homeostasis	2.03E-02
151	GO:0098542: defense response to other organism	2.17E-02
152	GO:0048278: vesicle docking	2.17E-02
153	GO:0016998: cell wall macromolecule catabolic process	2.17E-02
154	GO:0019748: secondary metabolic process	2.31E-02
155	GO:0030433: ubiquitin-dependent ERAD pathway	2.31E-02
156	GO:0006012: galactose metabolic process	2.46E-02
157	GO:0045492: xylan biosynthetic process	2.61E-02
158	GO:0042127: regulation of cell proliferation	2.61E-02
159	GO:0010118: stomatal movement	2.92E-02
160	GO:0008033: tRNA processing	2.92E-02
161	GO:0000413: protein peptidyl-prolyl isomerization	2.92E-02
162	GO:0006508: proteolysis	3.01E-02
163	GO:0010182: sugar mediated signaling pathway	3.08E-02
164	GO:0010305: leaf vascular tissue pattern formation	3.08E-02
165	GO:0048544: recognition of pollen	3.25E-02
166	GO:0009851: auxin biosynthetic process	3.41E-02
167	GO:0006623: protein targeting to vacuole	3.41E-02
168	GO:0009749: response to glucose	3.41E-02
169	GO:0009058: biosynthetic process	3.51E-02
170	GO:0009737: response to abscisic acid	3.56E-02
171	GO:0000302: response to reactive oxygen species	3.58E-02
172	GO:0006635: fatty acid beta-oxidation	3.58E-02
173	GO:0009630: gravitropism	3.75E-02
174	GO:0007264: small GTPase mediated signal transduction	3.75E-02
175	GO:0016032: viral process	3.75E-02
176	GO:0030163: protein catabolic process	3.93E-02
177	GO:0010090: trichome morphogenesis	3.93E-02
178	GO:0009567: double fertilization forming a zygote and endosperm	4.11E-02
179	GO:0019760: glucosinolate metabolic process	4.11E-02
180	GO:0009753: response to jasmonic acid	4.12E-02
181	GO:0006633: fatty acid biosynthetic process	4.17E-02
182	GO:0040008: regulation of growth	4.37E-02
183	GO:0009607: response to biotic stimulus	4.84E-02
184	GO:0009816: defense response to bacterium, incompatible interaction	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
3	GO:0033759: flavone synthase activity	0.00E+00
4	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
5	GO:0004164: diphthine synthase activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
8	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	0.00E+00
9	GO:0016301: kinase activity	1.22E-06
10	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.50E-06
11	GO:0004674: protein serine/threonine kinase activity	3.25E-06
12	GO:0017137: Rab GTPase binding	1.22E-04
13	GO:0004040: amidase activity	1.22E-04
14	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.23E-04
15	GO:0004747: ribokinase activity	2.38E-04
16	GO:0004656: procollagen-proline 4-dioxygenase activity	2.38E-04
17	GO:0042134: rRNA primary transcript binding	3.55E-04
18	GO:0008809: carnitine racemase activity	3.55E-04
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.55E-04
20	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.55E-04
21	GO:0015085: calcium ion transmembrane transporter activity	3.55E-04
22	GO:0004815: aspartate-tRNA ligase activity	3.55E-04
23	GO:0008865: fructokinase activity	3.89E-04
24	GO:0004708: MAP kinase kinase activity	3.89E-04
25	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	5.20E-04
26	GO:0016844: strictosidine synthase activity	6.73E-04
27	GO:0004566: beta-glucuronidase activity	7.72E-04
28	GO:0003994: aconitate hydratase activity	7.72E-04
29	GO:0032934: sterol binding	7.72E-04
30	GO:0045140: inositol phosphoceramide synthase activity	7.72E-04
31	GO:0004061: arylformamidase activity	7.72E-04
32	GO:0030742: GTP-dependent protein binding	7.72E-04
33	GO:0005506: iron ion binding	8.51E-04
34	GO:0005524: ATP binding	9.32E-04
35	GO:0005093: Rab GDP-dissociation inhibitor activity	1.25E-03
36	GO:0008430: selenium binding	1.25E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.25E-03
38	GO:0004383: guanylate cyclase activity	1.25E-03
39	GO:0016805: dipeptidase activity	1.25E-03
40	GO:0004190: aspartic-type endopeptidase activity	1.47E-03
41	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.80E-03
42	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.80E-03
43	GO:0031418: L-ascorbic acid binding	1.82E-03
44	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.91E-03
45	GO:0005484: SNAP receptor activity	2.21E-03
46	GO:0004834: tryptophan synthase activity	2.42E-03
47	GO:0070628: proteasome binding	2.42E-03
48	GO:0004576: oligosaccharyl transferase activity	2.42E-03
49	GO:0004930: G-protein coupled receptor activity	2.42E-03
50	GO:0015301: anion:anion antiporter activity	3.09E-03
51	GO:0005452: inorganic anion exchanger activity	3.09E-03
52	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.82E-03
53	GO:0010181: FMN binding	3.88E-03
54	GO:0019825: oxygen binding	4.26E-03
55	GO:0102391: decanoate--CoA ligase activity	4.60E-03
56	GO:0004144: diacylglycerol O-acyltransferase activity	4.60E-03
57	GO:0016746: transferase activity, transferring acyl groups	5.27E-03
58	GO:0004467: long-chain fatty acid-CoA ligase activity	5.44E-03
59	GO:0008235: metalloexopeptidase activity	5.44E-03
60	GO:0008320: protein transmembrane transporter activity	5.44E-03
61	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.73E-03
62	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.32E-03
63	GO:0004034: aldose 1-epimerase activity	6.32E-03
64	GO:0052747: sinapyl alcohol dehydrogenase activity	6.32E-03
65	GO:0005509: calcium ion binding	7.24E-03
66	GO:0008142: oxysterol binding	7.25E-03
67	GO:0005267: potassium channel activity	7.25E-03
68	GO:0030247: polysaccharide binding	7.59E-03
69	GO:0008417: fucosyltransferase activity	8.22E-03
70	GO:0005096: GTPase activator activity	8.84E-03
71	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	9.24E-03
72	GO:0030145: manganese ion binding	9.74E-03
73	GO:0004568: chitinase activity	1.03E-02
74	GO:0004713: protein tyrosine kinase activity	1.03E-02
75	GO:0004177: aminopeptidase activity	1.14E-02
76	GO:0000149: SNARE binding	1.17E-02
77	GO:0051539: 4 iron, 4 sulfur cluster binding	1.22E-02
78	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.26E-02
79	GO:0015095: magnesium ion transmembrane transporter activity	1.38E-02
80	GO:0005388: calcium-transporting ATPase activity	1.38E-02
81	GO:0004022: alcohol dehydrogenase (NAD) activity	1.38E-02
82	GO:0003774: motor activity	1.50E-02
83	GO:0005516: calmodulin binding	1.50E-02
84	GO:0008061: chitin binding	1.62E-02
85	GO:0003712: transcription cofactor activity	1.62E-02
86	GO:0004970: ionotropic glutamate receptor activity	1.62E-02
87	GO:0005217: intracellular ligand-gated ion channel activity	1.62E-02
88	GO:0005385: zinc ion transmembrane transporter activity	1.89E-02
89	GO:0003954: NADH dehydrogenase activity	1.89E-02
90	GO:0020037: heme binding	2.04E-02
91	GO:0008234: cysteine-type peptidase activity	2.07E-02
92	GO:0033612: receptor serine/threonine kinase binding	2.17E-02
93	GO:0000166: nucleotide binding	2.46E-02
94	GO:0003756: protein disulfide isomerase activity	2.61E-02
95	GO:0003824: catalytic activity	2.90E-02
96	GO:0046873: metal ion transmembrane transporter activity	3.08E-02
97	GO:0001085: RNA polymerase II transcription factor binding	3.08E-02
98	GO:0016853: isomerase activity	3.25E-02
99	GO:0004722: protein serine/threonine phosphatase activity	3.27E-02
100	GO:0016491: oxidoreductase activity	3.92E-02
101	GO:0016791: phosphatase activity	4.11E-02
102	GO:0005507: copper ion binding	4.12E-02
103	GO:0051213: dioxygenase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0045252: oxoglutarate dehydrogenase complex	0.00E+00
2	GO:0005783: endoplasmic reticulum	1.58E-12
3	GO:0005886: plasma membrane	6.81E-09
4	GO:0016021: integral component of membrane	1.45E-08
5	GO:0005789: endoplasmic reticulum membrane	4.17E-07
6	GO:0008250: oligosaccharyltransferase complex	1.50E-06
7	GO:0005794: Golgi apparatus	7.31E-06
8	GO:0005774: vacuolar membrane	3.86E-04
9	GO:0031901: early endosome membrane	5.70E-04
10	GO:0032580: Golgi cisterna membrane	6.83E-04
11	GO:0031304: intrinsic component of mitochondrial inner membrane	7.72E-04
12	GO:0030134: ER to Golgi transport vesicle	7.72E-04
13	GO:0005829: cytosol	8.91E-04
14	GO:0005765: lysosomal membrane	9.04E-04
15	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.80E-03
16	GO:0031902: late endosome membrane	1.99E-03
17	GO:0030660: Golgi-associated vesicle membrane	2.42E-03
18	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.42E-03
19	GO:0009504: cell plate	4.16E-03
20	GO:0030173: integral component of Golgi membrane	4.60E-03
21	GO:0030687: preribosome, large subunit precursor	5.44E-03
22	GO:0030131: clathrin adaptor complex	6.32E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	6.32E-03
24	GO:0005768: endosome	6.90E-03
25	GO:0030665: clathrin-coated vesicle membrane	9.24E-03
26	GO:0016459: myosin complex	1.03E-02
27	GO:0030125: clathrin vesicle coat	1.03E-02
28	GO:0017119: Golgi transport complex	1.03E-02
29	GO:0016020: membrane	1.09E-02
30	GO:0031201: SNARE complex	1.27E-02
31	GO:0009505: plant-type cell wall	1.31E-02
32	GO:0005802: trans-Golgi network	1.67E-02
33	GO:0005769: early endosome	1.76E-02
34	GO:0043234: protein complex	1.76E-02
35	GO:0005773: vacuole	1.93E-02
36	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.00E-02
37	GO:0005839: proteasome core complex	2.17E-02
38	GO:0005905: clathrin-coated pit	2.17E-02
39	GO:0010008: endosome membrane	2.28E-02
40	GO:0000932: P-body	4.65E-02
41	GO:0005788: endoplasmic reticulum lumen	4.84E-02