Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044154: histone H3-K14 acetylation0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0043972: histone H3-K23 acetylation0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I1.07E-10
9GO:0009658: chloroplast organization3.75E-10
10GO:0015979: photosynthesis3.58E-08
11GO:0019253: reductive pentose-phosphate cycle3.64E-08
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.66E-07
13GO:0019464: glycine decarboxylation via glycine cleavage system4.81E-07
14GO:0006810: transport8.02E-07
15GO:0030388: fructose 1,6-bisphosphate metabolic process4.48E-06
16GO:1902326: positive regulation of chlorophyll biosynthetic process4.48E-06
17GO:0009853: photorespiration1.25E-05
18GO:0071482: cellular response to light stimulus1.28E-05
19GO:0006000: fructose metabolic process1.59E-05
20GO:0018119: peptidyl-cysteine S-nitrosylation3.94E-05
21GO:0006094: gluconeogenesis6.06E-05
22GO:0009767: photosynthetic electron transport chain6.06E-05
23GO:0006546: glycine catabolic process6.35E-05
24GO:0009902: chloroplast relocation6.35E-05
25GO:0018298: protein-chromophore linkage1.07E-04
26GO:0042549: photosystem II stabilization1.45E-04
27GO:0010190: cytochrome b6f complex assembly1.45E-04
28GO:0046686: response to cadmium ion1.56E-04
29GO:0042026: protein refolding1.97E-04
30GO:0009854: oxidative photosynthetic carbon pathway1.97E-04
31GO:0010196: nonphotochemical quenching2.57E-04
32GO:0016117: carotenoid biosynthetic process2.61E-04
33GO:0000023: maltose metabolic process3.14E-04
34GO:0010362: negative regulation of anion channel activity by blue light3.14E-04
35GO:0009443: pyridoxal 5'-phosphate salvage3.14E-04
36GO:0006438: valyl-tRNA aminoacylation3.14E-04
37GO:0043971: histone H3-K18 acetylation3.14E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process3.14E-04
39GO:0006723: cuticle hydrocarbon biosynthetic process3.14E-04
40GO:1904964: positive regulation of phytol biosynthetic process3.14E-04
41GO:0033481: galacturonate biosynthetic process3.14E-04
42GO:0080093: regulation of photorespiration3.14E-04
43GO:0031998: regulation of fatty acid beta-oxidation3.14E-04
44GO:0009735: response to cytokinin3.16E-04
45GO:0048564: photosystem I assembly3.24E-04
46GO:0008610: lipid biosynthetic process3.24E-04
47GO:0009409: response to cold3.67E-04
48GO:0006002: fructose 6-phosphate metabolic process3.98E-04
49GO:0009657: plastid organization3.98E-04
50GO:0032544: plastid translation3.98E-04
51GO:0006096: glycolytic process5.33E-04
52GO:0010027: thylakoid membrane organization6.81E-04
53GO:0010275: NAD(P)H dehydrogenase complex assembly6.87E-04
54GO:0009629: response to gravity6.87E-04
55GO:0007154: cell communication6.87E-04
56GO:0034755: iron ion transmembrane transport6.87E-04
57GO:1904143: positive regulation of carotenoid biosynthetic process6.87E-04
58GO:0080183: response to photooxidative stress6.87E-04
59GO:0006352: DNA-templated transcription, initiation7.62E-04
60GO:0006415: translational termination7.62E-04
61GO:0005986: sucrose biosynthetic process9.84E-04
62GO:0080167: response to karrikin9.90E-04
63GO:0010207: photosystem II assembly1.11E-03
64GO:0006518: peptide metabolic process1.11E-03
65GO:0043447: alkane biosynthetic process1.11E-03
66GO:0006696: ergosterol biosynthetic process1.11E-03
67GO:0090351: seedling development1.24E-03
68GO:0051085: chaperone mediated protein folding requiring cofactor1.60E-03
69GO:0010731: protein glutathionylation1.60E-03
70GO:0043572: plastid fission1.60E-03
71GO:0016556: mRNA modification1.60E-03
72GO:2001141: regulation of RNA biosynthetic process1.60E-03
73GO:0007623: circadian rhythm1.61E-03
74GO:0009768: photosynthesis, light harvesting in photosystem I1.68E-03
75GO:0061077: chaperone-mediated protein folding1.84E-03
76GO:0016226: iron-sulfur cluster assembly2.02E-03
77GO:0080092: regulation of pollen tube growth2.02E-03
78GO:0015976: carbon utilization2.14E-03
79GO:0045727: positive regulation of translation2.14E-03
80GO:2000122: negative regulation of stomatal complex development2.14E-03
81GO:0071483: cellular response to blue light2.14E-03
82GO:0010037: response to carbon dioxide2.14E-03
83GO:0016123: xanthophyll biosynthetic process2.74E-03
84GO:0009247: glycolipid biosynthetic process2.74E-03
85GO:0006564: L-serine biosynthetic process2.74E-03
86GO:0006544: glycine metabolic process2.74E-03
87GO:0006656: phosphatidylcholine biosynthetic process2.74E-03
88GO:0010236: plastoquinone biosynthetic process2.74E-03
89GO:0043097: pyrimidine nucleoside salvage2.74E-03
90GO:0006097: glyoxylate cycle2.74E-03
91GO:0006461: protein complex assembly2.74E-03
92GO:1902183: regulation of shoot apical meristem development2.74E-03
93GO:0042631: cellular response to water deprivation2.80E-03
94GO:0042335: cuticle development2.80E-03
95GO:0009741: response to brassinosteroid3.01E-03
96GO:0009913: epidermal cell differentiation3.38E-03
97GO:0010358: leaf shaping3.38E-03
98GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.38E-03
99GO:0006206: pyrimidine nucleobase metabolic process3.38E-03
100GO:0006563: L-serine metabolic process3.38E-03
101GO:0009791: post-embryonic development3.47E-03
102GO:0055114: oxidation-reduction process3.52E-03
103GO:0006458: 'de novo' protein folding4.06E-03
104GO:1901259: chloroplast rRNA processing4.06E-03
105GO:0009645: response to low light intensity stimulus4.80E-03
106GO:0006400: tRNA modification4.80E-03
107GO:0050829: defense response to Gram-negative bacterium4.80E-03
108GO:0009416: response to light stimulus5.37E-03
109GO:0016559: peroxisome fission5.57E-03
110GO:0019375: galactolipid biosynthetic process5.57E-03
111GO:0009704: de-etiolation5.57E-03
112GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.39E-03
113GO:0010100: negative regulation of photomorphogenesis6.39E-03
114GO:0044030: regulation of DNA methylation6.39E-03
115GO:0017004: cytochrome complex assembly6.39E-03
116GO:0010206: photosystem II repair7.24E-03
117GO:0006098: pentose-phosphate shunt7.24E-03
118GO:2000024: regulation of leaf development7.24E-03
119GO:0000902: cell morphogenesis7.24E-03
120GO:0009638: phototropism8.14E-03
121GO:0035999: tetrahydrofolate interconversion8.14E-03
122GO:1900865: chloroplast RNA modification8.14E-03
123GO:0009637: response to blue light8.90E-03
124GO:0006535: cysteine biosynthetic process from serine9.07E-03
125GO:0045036: protein targeting to chloroplast9.07E-03
126GO:0000038: very long-chain fatty acid metabolic process1.00E-02
127GO:0019684: photosynthesis, light reaction1.00E-02
128GO:0006879: cellular iron ion homeostasis1.00E-02
129GO:0000272: polysaccharide catabolic process1.00E-02
130GO:0005983: starch catabolic process1.11E-02
131GO:0045037: protein import into chloroplast stroma1.11E-02
132GO:0006108: malate metabolic process1.21E-02
133GO:0006006: glucose metabolic process1.21E-02
134GO:0009636: response to toxic substance1.29E-02
135GO:0010020: chloroplast fission1.32E-02
136GO:0009225: nucleotide-sugar metabolic process1.43E-02
137GO:0007031: peroxisome organization1.43E-02
138GO:0042343: indole glucosinolate metabolic process1.43E-02
139GO:0080188: RNA-directed DNA methylation1.43E-02
140GO:0005985: sucrose metabolic process1.43E-02
141GO:0010025: wax biosynthetic process1.54E-02
142GO:0019344: cysteine biosynthetic process1.66E-02
143GO:0009944: polarity specification of adaxial/abaxial axis1.66E-02
144GO:0016575: histone deacetylation1.78E-02
145GO:0006418: tRNA aminoacylation for protein translation1.78E-02
146GO:0007017: microtubule-based process1.78E-02
147GO:0042742: defense response to bacterium1.82E-02
148GO:0098542: defense response to other organism1.91E-02
149GO:0006730: one-carbon metabolic process2.03E-02
150GO:0007005: mitochondrion organization2.03E-02
151GO:0006508: proteolysis2.07E-02
152GO:0045454: cell redox homeostasis2.33E-02
153GO:0010118: stomatal movement2.57E-02
154GO:0010268: brassinosteroid homeostasis2.71E-02
155GO:0008360: regulation of cell shape2.71E-02
156GO:0006520: cellular amino acid metabolic process2.71E-02
157GO:0048868: pollen tube development2.71E-02
158GO:0006457: protein folding2.75E-02
159GO:0009646: response to absence of light2.85E-02
160GO:0015986: ATP synthesis coupled proton transport2.85E-02
161GO:0006814: sodium ion transport2.85E-02
162GO:0032259: methylation2.86E-02
163GO:0019252: starch biosynthetic process3.00E-02
164GO:0006629: lipid metabolic process3.02E-02
165GO:0080156: mitochondrial mRNA modification3.15E-02
166GO:0002229: defense response to oomycetes3.15E-02
167GO:0016132: brassinosteroid biosynthetic process3.15E-02
168GO:0009790: embryo development3.24E-02
169GO:0048235: pollen sperm cell differentiation3.30E-02
170GO:0032502: developmental process3.30E-02
171GO:0010090: trichome morphogenesis3.45E-02
172GO:0006633: fatty acid biosynthetic process3.49E-02
173GO:0016125: sterol metabolic process3.61E-02
174GO:0010286: heat acclimation3.77E-02
175GO:0071805: potassium ion transmembrane transport3.77E-02
176GO:0001666: response to hypoxia4.09E-02
177GO:0009816: defense response to bacterium, incompatible interaction4.25E-02
178GO:0009627: systemic acquired resistance4.42E-02
179GO:0042128: nitrate assimilation4.42E-02
180GO:0009817: defense response to fungus, incompatible interaction4.93E-02
181GO:0030244: cellulose biosynthetic process4.93E-02
182GO:0008219: cell death4.93E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0005363: maltose transmembrane transporter activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0008974: phosphoribulokinase activity0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0046905: phytoene synthase activity0.00E+00
15GO:0008465: glycerate dehydrogenase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0051738: xanthophyll binding0.00E+00
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.81E-07
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.48E-06
20GO:0004033: aldo-keto reductase (NADP) activity8.86E-06
21GO:0004375: glycine dehydrogenase (decarboxylating) activity3.55E-05
22GO:0016149: translation release factor activity, codon specific3.55E-05
23GO:0016987: sigma factor activity6.35E-05
24GO:0001053: plastid sigma factor activity6.35E-05
25GO:0016168: chlorophyll binding7.26E-05
26GO:0004222: metalloendopeptidase activity1.28E-04
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.97E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity3.14E-04
29GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.14E-04
30GO:0070006: metalloaminopeptidase activity3.14E-04
31GO:0003867: 4-aminobutyrate transaminase activity3.14E-04
32GO:0051996: squalene synthase activity3.14E-04
33GO:0004832: valine-tRNA ligase activity3.14E-04
34GO:0030941: chloroplast targeting sequence binding3.14E-04
35GO:0010012: steroid 22-alpha hydroxylase activity3.14E-04
36GO:0048038: quinone binding4.24E-04
37GO:0003747: translation release factor activity4.78E-04
38GO:0004617: phosphoglycerate dehydrogenase activity6.87E-04
39GO:0004047: aminomethyltransferase activity6.87E-04
40GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.87E-04
41GO:0004802: transketolase activity6.87E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.87E-04
43GO:0000234: phosphoethanolamine N-methyltransferase activity6.87E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.87E-04
45GO:0008967: phosphoglycolate phosphatase activity6.87E-04
46GO:0050017: L-3-cyanoalanine synthase activity6.87E-04
47GO:0010291: carotene beta-ring hydroxylase activity6.87E-04
48GO:0004618: phosphoglycerate kinase activity6.87E-04
49GO:0010297: heteropolysaccharide binding6.87E-04
50GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.87E-04
51GO:0051082: unfolded protein binding7.07E-04
52GO:0044183: protein binding involved in protein folding7.62E-04
53GO:0005089: Rho guanyl-nucleotide exchange factor activity7.62E-04
54GO:0031072: heat shock protein binding9.84E-04
55GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.11E-03
56GO:0070330: aromatase activity1.11E-03
57GO:0032947: protein complex scaffold1.11E-03
58GO:0004148: dihydrolipoyl dehydrogenase activity1.11E-03
59GO:0008266: poly(U) RNA binding1.11E-03
60GO:0030267: glyoxylate reductase (NADP) activity1.11E-03
61GO:0070402: NADPH binding1.11E-03
62GO:0031409: pigment binding1.37E-03
63GO:0005528: FK506 binding1.52E-03
64GO:0051536: iron-sulfur cluster binding1.52E-03
65GO:0008508: bile acid:sodium symporter activity1.60E-03
66GO:0035250: UDP-galactosyltransferase activity1.60E-03
67GO:0048487: beta-tubulin binding1.60E-03
68GO:0009882: blue light photoreceptor activity1.60E-03
69GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.60E-03
70GO:0015079: potassium ion transmembrane transporter activity1.68E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding1.94E-03
72GO:0005198: structural molecule activity2.04E-03
73GO:0051861: glycolipid binding2.14E-03
74GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.14E-03
75GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.14E-03
76GO:0010385: double-stranded methylated DNA binding2.14E-03
77GO:0050378: UDP-glucuronate 4-epimerase activity2.14E-03
78GO:0043495: protein anchor2.14E-03
79GO:0022891: substrate-specific transmembrane transporter activity2.20E-03
80GO:0051287: NAD binding2.24E-03
81GO:0008374: O-acyltransferase activity2.74E-03
82GO:0004372: glycine hydroxymethyltransferase activity2.74E-03
83GO:0018685: alkane 1-monooxygenase activity2.74E-03
84GO:0080030: methyl indole-3-acetate esterase activity3.38E-03
85GO:0004332: fructose-bisphosphate aldolase activity3.38E-03
86GO:0042578: phosphoric ester hydrolase activity3.38E-03
87GO:0016615: malate dehydrogenase activity3.38E-03
88GO:0004124: cysteine synthase activity4.06E-03
89GO:0004849: uridine kinase activity4.06E-03
90GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.06E-03
91GO:0030060: L-malate dehydrogenase activity4.06E-03
92GO:0008237: metallopeptidase activity4.79E-03
93GO:0019899: enzyme binding4.80E-03
94GO:0019843: rRNA binding5.36E-03
95GO:0005506: iron ion binding5.76E-03
96GO:0008135: translation factor activity, RNA binding6.39E-03
97GO:0003843: 1,3-beta-D-glucan synthase activity6.39E-03
98GO:0015078: hydrogen ion transmembrane transporter activity6.39E-03
99GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.39E-03
100GO:0003824: catalytic activity7.13E-03
101GO:0005381: iron ion transmembrane transporter activity8.14E-03
102GO:0016787: hydrolase activity9.70E-03
103GO:0047372: acylglycerol lipase activity1.00E-02
104GO:0015386: potassium:proton antiporter activity1.00E-02
105GO:0004177: aminopeptidase activity1.00E-02
106GO:0042802: identical protein binding1.10E-02
107GO:0004364: glutathione transferase activity1.10E-02
108GO:0004089: carbonate dehydratase activity1.21E-02
109GO:0000155: phosphorelay sensor kinase activity1.21E-02
110GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.34E-02
111GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.54E-02
112GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.54E-02
113GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.54E-02
114GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.55E-02
115GO:0005509: calcium ion binding1.59E-02
116GO:0004407: histone deacetylase activity1.66E-02
117GO:0043424: protein histidine kinase binding1.78E-02
118GO:0004176: ATP-dependent peptidase activity1.91E-02
119GO:0016746: transferase activity, transferring acyl groups2.28E-02
120GO:0003756: protein disulfide isomerase activity2.29E-02
121GO:0004812: aminoacyl-tRNA ligase activity2.43E-02
122GO:0004402: histone acetyltransferase activity2.57E-02
123GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.85E-02
124GO:0050662: coenzyme binding2.85E-02
125GO:0010181: FMN binding2.85E-02
126GO:0030170: pyridoxal phosphate binding3.08E-02
127GO:0019825: oxygen binding3.16E-02
128GO:0009055: electron carrier activity3.30E-02
129GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.45E-02
130GO:0005515: protein binding3.61E-02
131GO:0016759: cellulose synthase activity3.61E-02
132GO:0008483: transaminase activity3.77E-02
133GO:0005200: structural constituent of cytoskeleton3.77E-02
134GO:0016597: amino acid binding3.92E-02
135GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.76E-02
136GO:0008236: serine-type peptidase activity4.76E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0009507: chloroplast1.82E-60
5GO:0009535: chloroplast thylakoid membrane9.88E-33
6GO:0009941: chloroplast envelope2.00E-29
7GO:0009570: chloroplast stroma1.87E-19
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.97E-16
9GO:0009579: thylakoid1.41E-13
10GO:0009534: chloroplast thylakoid2.22E-12
11GO:0009543: chloroplast thylakoid lumen1.49E-10
12GO:0010319: stromule2.02E-09
13GO:0009654: photosystem II oxygen evolving complex2.15E-09
14GO:0048046: apoplast7.25E-07
15GO:0019898: extrinsic component of membrane1.05E-06
16GO:0030095: chloroplast photosystem II2.15E-06
17GO:0009706: chloroplast inner membrane9.30E-06
18GO:0010287: plastoglobule1.51E-05
19GO:0009523: photosystem II2.77E-05
20GO:0031969: chloroplast membrane3.03E-05
21GO:0005960: glycine cleavage complex3.55E-05
22GO:0031977: thylakoid lumen2.21E-04
23GO:0009782: photosystem I antenna complex3.14E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex6.87E-04
25GO:0016020: membrane7.47E-04
26GO:0030076: light-harvesting complex1.24E-03
27GO:0042651: thylakoid membrane1.68E-03
28GO:0009517: PSII associated light-harvesting complex II2.14E-03
29GO:0009512: cytochrome b6f complex2.74E-03
30GO:0009536: plastid2.91E-03
31GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.38E-03
32GO:0009533: chloroplast stromal thylakoid4.80E-03
33GO:0031359: integral component of chloroplast outer membrane4.80E-03
34GO:0005779: integral component of peroxisomal membrane6.39E-03
35GO:0009539: photosystem II reaction center6.39E-03
36GO:0000148: 1,3-beta-D-glucan synthase complex6.39E-03
37GO:0016021: integral component of membrane6.89E-03
38GO:0009707: chloroplast outer membrane7.02E-03
39GO:0005759: mitochondrial matrix7.18E-03
40GO:0045298: tubulin complex7.24E-03
41GO:0016324: apical plasma membrane9.07E-03
42GO:0009508: plastid chromosome1.21E-02
43GO:0005777: peroxisome2.30E-02
44GO:0009522: photosystem I2.85E-02
45GO:0005623: cell2.85E-02
46GO:0032580: Golgi cisterna membrane3.61E-02
47GO:0009295: nucleoid3.77E-02
48GO:0005778: peroxisomal membrane3.77E-02
<
Gene type



Gene DE type