Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0015690: aluminum cation transport0.00E+00
4GO:0070212: protein poly-ADP-ribosylation0.00E+00
5GO:0045792: negative regulation of cell size0.00E+00
6GO:1900367: positive regulation of defense response to insect0.00E+00
7GO:0050691: regulation of defense response to virus by host0.00E+00
8GO:0042742: defense response to bacterium1.34E-15
9GO:0009617: response to bacterium3.44E-13
10GO:0080142: regulation of salicylic acid biosynthetic process5.31E-10
11GO:0006979: response to oxidative stress8.20E-09
12GO:0010200: response to chitin5.08E-08
13GO:0006952: defense response6.93E-07
14GO:0002237: response to molecule of bacterial origin8.62E-07
15GO:0009816: defense response to bacterium, incompatible interaction1.35E-06
16GO:0009627: systemic acquired resistance1.57E-06
17GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.77E-06
18GO:0009626: plant-type hypersensitive response1.92E-06
19GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.61E-06
20GO:0031349: positive regulation of defense response2.61E-06
21GO:0009751: response to salicylic acid2.76E-06
22GO:0009625: response to insect4.37E-06
23GO:0010112: regulation of systemic acquired resistance8.86E-06
24GO:0050832: defense response to fungus1.94E-05
25GO:0009651: response to salt stress3.31E-05
26GO:0006457: protein folding5.11E-05
27GO:0009407: toxin catabolic process6.03E-05
28GO:0006465: signal peptide processing6.26E-05
29GO:0009697: salicylic acid biosynthetic process6.26E-05
30GO:0006468: protein phosphorylation8.50E-05
31GO:0010942: positive regulation of cell death9.17E-05
32GO:0031348: negative regulation of defense response1.02E-04
33GO:0010150: leaf senescence1.35E-04
34GO:0009636: response to toxic substance1.53E-04
35GO:0009414: response to water deprivation1.79E-04
36GO:0009646: response to absence of light2.04E-04
37GO:0030162: regulation of proteolysis2.12E-04
38GO:0051245: negative regulation of cellular defense response2.36E-04
39GO:0009700: indole phytoalexin biosynthetic process2.36E-04
40GO:0055081: anion homeostasis2.36E-04
41GO:1901183: positive regulation of camalexin biosynthetic process2.36E-04
42GO:0010230: alternative respiration2.36E-04
43GO:0046244: salicylic acid catabolic process2.36E-04
44GO:0060862: negative regulation of floral organ abscission2.36E-04
45GO:0000302: response to reactive oxygen species2.47E-04
46GO:0030968: endoplasmic reticulum unfolded protein response2.63E-04
47GO:2000031: regulation of salicylic acid mediated signaling pathway2.63E-04
48GO:0010120: camalexin biosynthetic process2.63E-04
49GO:1900426: positive regulation of defense response to bacterium3.78E-04
50GO:0043069: negative regulation of programmed cell death4.42E-04
51GO:0002221: pattern recognition receptor signaling pathway5.24E-04
52GO:2000072: regulation of defense response to fungus, incompatible interaction5.24E-04
53GO:0080185: effector dependent induction by symbiont of host immune response5.24E-04
54GO:0010618: aerenchyma formation5.24E-04
55GO:0015865: purine nucleotide transport5.24E-04
56GO:0010541: acropetal auxin transport5.24E-04
57GO:0070588: calcium ion transmembrane transport8.34E-04
58GO:0072661: protein targeting to plasma membrane8.52E-04
59GO:0048281: inflorescence morphogenesis8.52E-04
60GO:0010581: regulation of starch biosynthetic process8.52E-04
61GO:1900140: regulation of seedling development8.52E-04
62GO:0055074: calcium ion homeostasis8.52E-04
63GO:0000162: tryptophan biosynthetic process9.25E-04
64GO:0009863: salicylic acid mediated signaling pathway1.02E-03
65GO:0051707: response to other organism1.05E-03
66GO:0000187: activation of MAPK activity1.21E-03
67GO:0034219: carbohydrate transmembrane transport1.21E-03
68GO:0002239: response to oomycetes1.21E-03
69GO:0046902: regulation of mitochondrial membrane permeability1.21E-03
70GO:0072334: UDP-galactose transmembrane transport1.21E-03
71GO:0006612: protein targeting to membrane1.21E-03
72GO:0010148: transpiration1.21E-03
73GO:0015696: ammonium transport1.21E-03
74GO:0048530: fruit morphogenesis1.21E-03
75GO:0031347: regulation of defense response1.33E-03
76GO:0009814: defense response, incompatible interaction1.35E-03
77GO:2000022: regulation of jasmonic acid mediated signaling pathway1.35E-03
78GO:0009409: response to cold1.44E-03
79GO:0010224: response to UV-B1.59E-03
80GO:1901141: regulation of lignin biosynthetic process1.62E-03
81GO:0080037: negative regulation of cytokinin-activated signaling pathway1.62E-03
82GO:0060548: negative regulation of cell death1.62E-03
83GO:0009652: thigmotropism1.62E-03
84GO:0045088: regulation of innate immune response1.62E-03
85GO:0072488: ammonium transmembrane transport1.62E-03
86GO:0010363: regulation of plant-type hypersensitive response1.62E-03
87GO:0071219: cellular response to molecule of bacterial origin1.62E-03
88GO:0010508: positive regulation of autophagy1.62E-03
89GO:0010197: polar nucleus fusion2.00E-03
90GO:0031365: N-terminal protein amino acid modification2.07E-03
91GO:0010225: response to UV-C2.07E-03
92GO:2000762: regulation of phenylpropanoid metabolic process2.07E-03
93GO:0046283: anthocyanin-containing compound metabolic process2.07E-03
94GO:0002229: defense response to oomycetes2.47E-03
95GO:0006891: intra-Golgi vesicle-mediated transport2.47E-03
96GO:0043248: proteasome assembly2.55E-03
97GO:0060918: auxin transport2.55E-03
98GO:0009759: indole glucosinolate biosynthetic process2.55E-03
99GO:0010310: regulation of hydrogen peroxide metabolic process3.06E-03
100GO:0009612: response to mechanical stimulus3.06E-03
101GO:0010199: organ boundary specification between lateral organs and the meristem3.06E-03
102GO:0006886: intracellular protein transport3.20E-03
103GO:0001666: response to hypoxia3.56E-03
104GO:0071446: cellular response to salicylic acid stimulus3.61E-03
105GO:0070370: cellular heat acclimation3.61E-03
106GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.61E-03
107GO:0050829: defense response to Gram-negative bacterium3.61E-03
108GO:0009737: response to abscisic acid3.88E-03
109GO:0031540: regulation of anthocyanin biosynthetic process4.19E-03
110GO:0006102: isocitrate metabolic process4.19E-03
111GO:0009787: regulation of abscisic acid-activated signaling pathway4.19E-03
112GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.19E-03
113GO:0006605: protein targeting4.19E-03
114GO:0008219: cell death4.64E-03
115GO:0009817: defense response to fungus, incompatible interaction4.64E-03
116GO:0043562: cellular response to nitrogen levels4.79E-03
117GO:0009699: phenylpropanoid biosynthetic process4.79E-03
118GO:0010497: plasmodesmata-mediated intercellular transport4.79E-03
119GO:0010204: defense response signaling pathway, resistance gene-independent4.79E-03
120GO:0010119: regulation of stomatal movement5.36E-03
121GO:0015780: nucleotide-sugar transport5.43E-03
122GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process5.49E-03
123GO:0007166: cell surface receptor signaling pathway5.65E-03
124GO:0045087: innate immune response5.87E-03
125GO:0048268: clathrin coat assembly6.09E-03
126GO:2000280: regulation of root development6.09E-03
127GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.09E-03
128GO:0010215: cellulose microfibril organization6.78E-03
129GO:0009870: defense response signaling pathway, resistance gene-dependent6.78E-03
130GO:0006032: chitin catabolic process6.78E-03
131GO:0009682: induced systemic resistance7.50E-03
132GO:0052544: defense response by callose deposition in cell wall7.50E-03
133GO:0071365: cellular response to auxin stimulus8.25E-03
134GO:0012501: programmed cell death8.25E-03
135GO:0002213: defense response to insect8.25E-03
136GO:0010105: negative regulation of ethylene-activated signaling pathway8.25E-03
137GO:0010075: regulation of meristem growth9.02E-03
138GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.17E-03
139GO:0009266: response to temperature stimulus9.82E-03
140GO:0009934: regulation of meristem structural organization9.82E-03
141GO:0034605: cellular response to heat9.82E-03
142GO:0006541: glutamine metabolic process9.82E-03
143GO:0007034: vacuolar transport9.82E-03
144GO:0006486: protein glycosylation1.02E-02
145GO:0009611: response to wounding1.03E-02
146GO:0009969: xyloglucan biosynthetic process1.06E-02
147GO:0042343: indole glucosinolate metabolic process1.06E-02
148GO:0080167: response to karrikin1.09E-02
149GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.14E-02
150GO:0034976: response to endoplasmic reticulum stress1.15E-02
151GO:0080147: root hair cell development1.24E-02
152GO:0009620: response to fungus1.33E-02
153GO:0016998: cell wall macromolecule catabolic process1.42E-02
154GO:0098542: defense response to other organism1.42E-02
155GO:0009553: embryo sac development1.42E-02
156GO:0048278: vesicle docking1.42E-02
157GO:0009624: response to nematode1.46E-02
158GO:0071456: cellular response to hypoxia1.51E-02
159GO:0019748: secondary metabolic process1.51E-02
160GO:0035428: hexose transmembrane transport1.51E-02
161GO:0030433: ubiquitin-dependent ERAD pathway1.51E-02
162GO:0009411: response to UV1.61E-02
163GO:0009306: protein secretion1.70E-02
164GO:0009408: response to heat1.79E-02
165GO:0070417: cellular response to cold1.80E-02
166GO:0046686: response to cadmium ion1.90E-02
167GO:0000413: protein peptidyl-prolyl isomerization1.91E-02
168GO:0010051: xylem and phloem pattern formation1.91E-02
169GO:0042631: cellular response to water deprivation1.91E-02
170GO:0042391: regulation of membrane potential1.91E-02
171GO:0009845: seed germination1.98E-02
172GO:0046323: glucose import2.01E-02
173GO:0061025: membrane fusion2.12E-02
174GO:0006623: protein targeting to vacuole2.23E-02
175GO:0010193: response to ozone2.34E-02
176GO:0051607: defense response to virus2.92E-02
177GO:0009615: response to virus3.04E-02
178GO:0006906: vesicle fusion3.29E-02
179GO:0016049: cell growth3.54E-02
180GO:0009832: plant-type cell wall biogenesis3.80E-02
181GO:0007568: aging4.07E-02
182GO:0048527: lateral root development4.07E-02
183GO:0009631: cold acclimation4.07E-02
184GO:0055114: oxidation-reduction process4.30E-02
185GO:0009867: jasmonic acid mediated signaling pathway4.34E-02
186GO:0006099: tricarboxylic acid cycle4.48E-02
187GO:0009723: response to ethylene4.51E-02
188GO:0006887: exocytosis4.90E-02
189GO:0006897: endocytosis4.90E-02
RankGO TermAdjusted P value
1GO:0008752: FMN reductase activity0.00E+00
2GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0052873: FMN reductase (NADPH) activity0.00E+00
5GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
6GO:0051082: unfolded protein binding2.78E-06
7GO:0005460: UDP-glucose transmembrane transporter activity2.15E-05
8GO:0005459: UDP-galactose transmembrane transporter activity6.26E-05
9GO:0047631: ADP-ribose diphosphatase activity6.26E-05
10GO:0005516: calmodulin binding8.11E-05
11GO:0000210: NAD+ diphosphatase activity9.17E-05
12GO:0004364: glutathione transferase activity1.16E-04
13GO:0004602: glutathione peroxidase activity1.27E-04
14GO:0043295: glutathione binding1.67E-04
15GO:0005524: ATP binding1.86E-04
16GO:0004714: transmembrane receptor protein tyrosine kinase activity2.12E-04
17GO:0031127: alpha-(1,2)-fucosyltransferase activity2.36E-04
18GO:2001227: quercitrin binding2.36E-04
19GO:1901149: salicylic acid binding2.36E-04
20GO:0080042: ADP-glucose pyrophosphohydrolase activity2.36E-04
21GO:0004048: anthranilate phosphoribosyltransferase activity2.36E-04
22GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity2.36E-04
23GO:2001147: camalexin binding2.36E-04
24GO:0016301: kinase activity2.82E-04
25GO:0004674: protein serine/threonine kinase activity4.81E-04
26GO:0080041: ADP-ribose pyrophosphohydrolase activity5.24E-04
27GO:0017110: nucleoside-diphosphatase activity5.24E-04
28GO:0004338: glucan exo-1,3-beta-glucosidase activity5.24E-04
29GO:0005509: calcium ion binding6.22E-04
30GO:0005388: calcium-transporting ATPase activity6.63E-04
31GO:0004049: anthranilate synthase activity8.52E-04
32GO:0000030: mannosyltransferase activity8.52E-04
33GO:0004148: dihydrolipoyl dehydrogenase activity8.52E-04
34GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.52E-04
35GO:0035529: NADH pyrophosphatase activity1.21E-03
36GO:0004449: isocitrate dehydrogenase (NAD+) activity1.21E-03
37GO:0051287: NAD binding1.33E-03
38GO:0043495: protein anchor1.62E-03
39GO:0031625: ubiquitin protein ligase binding1.73E-03
40GO:0005471: ATP:ADP antiporter activity2.07E-03
41GO:0008519: ammonium transmembrane transporter activity2.55E-03
42GO:0004029: aldehyde dehydrogenase (NAD) activity2.55E-03
43GO:0004656: procollagen-proline 4-dioxygenase activity3.06E-03
44GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.61E-03
45GO:0008235: metalloexopeptidase activity3.61E-03
46GO:0008121: ubiquinol-cytochrome-c reductase activity3.61E-03
47GO:0004564: beta-fructofuranosidase activity4.19E-03
48GO:0004806: triglyceride lipase activity4.19E-03
49GO:0004708: MAP kinase kinase activity4.19E-03
50GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.36E-03
51GO:0005507: copper ion binding4.80E-03
52GO:0050897: cobalt ion binding5.36E-03
53GO:0008417: fucosyltransferase activity5.43E-03
54GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.87E-03
55GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.09E-03
56GO:0004575: sucrose alpha-glucosidase activity6.09E-03
57GO:0004568: chitinase activity6.78E-03
58GO:0005545: 1-phosphatidylinositol binding6.78E-03
59GO:0004713: protein tyrosine kinase activity6.78E-03
60GO:0004177: aminopeptidase activity7.50E-03
61GO:0008559: xenobiotic-transporting ATPase activity7.50E-03
62GO:0031072: heat shock protein binding9.02E-03
63GO:0005262: calcium channel activity9.02E-03
64GO:0043531: ADP binding9.34E-03
65GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.82E-03
66GO:0030552: cAMP binding1.06E-02
67GO:0004867: serine-type endopeptidase inhibitor activity1.06E-02
68GO:0030553: cGMP binding1.06E-02
69GO:0051119: sugar transmembrane transporter activity1.06E-02
70GO:0005216: ion channel activity1.32E-02
71GO:0033612: receptor serine/threonine kinase binding1.42E-02
72GO:0016746: transferase activity, transferring acyl groups1.50E-02
73GO:0030246: carbohydrate binding1.57E-02
74GO:0008810: cellulase activity1.61E-02
75GO:0004672: protein kinase activity1.72E-02
76GO:0005249: voltage-gated potassium channel activity1.91E-02
77GO:0030551: cyclic nucleotide binding1.91E-02
78GO:0030276: clathrin binding2.01E-02
79GO:0005355: glucose transmembrane transporter activity2.12E-02
80GO:0010181: FMN binding2.12E-02
81GO:0008565: protein transporter activity2.19E-02
82GO:0043565: sequence-specific DNA binding2.49E-02
83GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.80E-02
84GO:0044212: transcription regulatory region DNA binding2.87E-02
85GO:0051213: dioxygenase activity3.04E-02
86GO:0042802: identical protein binding3.21E-02
87GO:0030247: polysaccharide binding3.41E-02
88GO:0015238: drug transmembrane transporter activity3.80E-02
89GO:0004222: metalloendopeptidase activity3.93E-02
90GO:0030145: manganese ion binding4.07E-02
91GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.07E-02
92GO:0003746: translation elongation factor activity4.34E-02
93GO:0050660: flavin adenine dinucleotide binding4.51E-02
94GO:0000149: SNARE binding4.62E-02
95GO:0004712: protein serine/threonine/tyrosine kinase activity4.62E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane5.74E-16
2GO:0005783: endoplasmic reticulum9.93E-08
3GO:0005788: endoplasmic reticulum lumen1.35E-06
4GO:0005773: vacuole1.41E-05
5GO:0005618: cell wall6.67E-05
6GO:0009506: plasmodesma9.68E-05
7GO:0005774: vacuolar membrane1.51E-04
8GO:0005787: signal peptidase complex2.36E-04
9GO:0031090: organelle membrane3.18E-04
10GO:0031225: anchored component of membrane4.14E-04
11GO:0005740: mitochondrial envelope4.42E-04
12GO:0005901: caveola5.24E-04
13GO:0019005: SCF ubiquitin ligase complex5.68E-04
14GO:0048046: apoplast5.69E-04
15GO:0005750: mitochondrial respiratory chain complex III7.46E-04
16GO:0005795: Golgi stack8.34E-04
17GO:0030176: integral component of endoplasmic reticulum membrane8.34E-04
18GO:0000164: protein phosphatase type 1 complex2.07E-03
19GO:0016021: integral component of membrane2.09E-03
20GO:0030173: integral component of Golgi membrane3.06E-03
21GO:0005829: cytosol4.34E-03
22GO:0030665: clathrin-coated vesicle membrane6.09E-03
23GO:0005887: integral component of plasma membrane6.67E-03
24GO:0017119: Golgi transport complex6.78E-03
25GO:0046658: anchored component of plasma membrane6.81E-03
26GO:0031012: extracellular matrix9.02E-03
27GO:0005905: clathrin-coated pit1.42E-02
28GO:0005741: mitochondrial outer membrane1.42E-02
29GO:0030136: clathrin-coated vesicle1.80E-02
30GO:0005794: Golgi apparatus1.99E-02
31GO:0009504: cell plate2.23E-02
32GO:0016592: mediator complex2.45E-02
33GO:0032580: Golgi cisterna membrane2.68E-02
34GO:0009507: chloroplast3.02E-02
35GO:0000151: ubiquitin ligase complex3.67E-02
36GO:0000325: plant-type vacuole4.07E-02
37GO:0031201: SNARE complex4.90E-02
38GO:0031902: late endosome membrane4.90E-02
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Gene type



Gene DE type