Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006792: regulation of sulfur utilization0.00E+00
2GO:0010200: response to chitin1.45E-07
3GO:0009751: response to salicylic acid9.44E-06
4GO:0009753: response to jasmonic acid1.16E-05
5GO:0030162: regulation of proteolysis1.76E-05
6GO:0010439: regulation of glucosinolate biosynthetic process1.76E-05
7GO:0009873: ethylene-activated signaling pathway1.82E-05
8GO:0051973: positive regulation of telomerase activity4.74E-05
9GO:0080164: regulation of nitric oxide metabolic process4.74E-05
10GO:0055063: sulfate ion homeostasis4.74E-05
11GO:0046500: S-adenosylmethionine metabolic process4.74E-05
12GO:0042542: response to hydrogen peroxide5.13E-05
13GO:0071497: cellular response to freezing1.17E-04
14GO:0051592: response to calcium ion1.17E-04
15GO:0015709: thiosulfate transport1.17E-04
16GO:0071422: succinate transmembrane transport1.17E-04
17GO:2000022: regulation of jasmonic acid mediated signaling pathway1.57E-04
18GO:0006556: S-adenosylmethionine biosynthetic process2.00E-04
19GO:0080168: abscisic acid transport2.00E-04
20GO:0009733: response to auxin2.15E-04
21GO:0009741: response to brassinosteroid2.40E-04
22GO:0009743: response to carbohydrate2.94E-04
23GO:0015729: oxaloacetate transport2.94E-04
24GO:0009409: response to cold3.07E-04
25GO:0009738: abscisic acid-activated signaling pathway3.37E-04
26GO:0009828: plant-type cell wall loosening3.63E-04
27GO:0046345: abscisic acid catabolic process3.94E-04
28GO:0009164: nucleoside catabolic process5.00E-04
29GO:0071423: malate transmembrane transport5.00E-04
30GO:0006544: glycine metabolic process5.00E-04
31GO:0010438: cellular response to sulfur starvation5.00E-04
32GO:0009826: unidimensional cell growth5.06E-04
33GO:0035435: phosphate ion transmembrane transport6.13E-04
34GO:0006563: L-serine metabolic process6.13E-04
35GO:0006555: methionine metabolic process6.13E-04
36GO:0009737: response to abscisic acid6.95E-04
37GO:0009612: response to mechanical stimulus7.31E-04
38GO:0008272: sulfate transport8.54E-04
39GO:0051510: regulation of unidimensional cell growth8.54E-04
40GO:0010038: response to metal ion8.54E-04
41GO:0006355: regulation of transcription, DNA-templated9.45E-04
42GO:2000070: regulation of response to water deprivation9.81E-04
43GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.07E-03
44GO:0048574: long-day photoperiodism, flowering1.11E-03
45GO:0044030: regulation of DNA methylation1.11E-03
46GO:2000031: regulation of salicylic acid mediated signaling pathway1.11E-03
47GO:0010099: regulation of photomorphogenesis1.11E-03
48GO:0030154: cell differentiation1.18E-03
49GO:0035999: tetrahydrofolate interconversion1.40E-03
50GO:0006357: regulation of transcription from RNA polymerase II promoter1.59E-03
51GO:1903507: negative regulation of nucleic acid-templated transcription1.70E-03
52GO:0010015: root morphogenesis1.70E-03
53GO:0018107: peptidyl-threonine phosphorylation2.03E-03
54GO:0034605: cellular response to heat2.20E-03
55GO:0009611: response to wounding2.36E-03
56GO:0010167: response to nitrate2.38E-03
57GO:0007623: circadian rhythm2.85E-03
58GO:0019953: sexual reproduction2.93E-03
59GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.18E-03
60GO:0006730: one-carbon metabolic process3.32E-03
61GO:0040007: growth3.52E-03
62GO:0019722: calcium-mediated signaling3.73E-03
63GO:0000271: polysaccharide biosynthetic process4.15E-03
64GO:0010182: sugar mediated signaling pathway4.37E-03
65GO:0010268: brassinosteroid homeostasis4.37E-03
66GO:0045489: pectin biosynthetic process4.37E-03
67GO:0009646: response to absence of light4.59E-03
68GO:0009791: post-embryonic development4.81E-03
69GO:0002229: defense response to oomycetes5.04E-03
70GO:0016132: brassinosteroid biosynthetic process5.04E-03
71GO:0009723: response to ethylene5.06E-03
72GO:0010583: response to cyclopentenone5.28E-03
73GO:0009414: response to water deprivation5.43E-03
74GO:0009639: response to red or far red light5.75E-03
75GO:0016125: sterol metabolic process5.75E-03
76GO:0019760: glucosinolate metabolic process5.75E-03
77GO:0007267: cell-cell signaling6.00E-03
78GO:0045454: cell redox homeostasis6.48E-03
79GO:0001666: response to hypoxia6.50E-03
80GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.75E-03
81GO:0010411: xyloglucan metabolic process7.28E-03
82GO:0048573: photoperiodism, flowering7.28E-03
83GO:0006629: lipid metabolic process7.99E-03
84GO:0045087: innate immune response9.22E-03
85GO:0016051: carbohydrate biosynthetic process9.22E-03
86GO:0046686: response to cadmium ion9.83E-03
87GO:0006839: mitochondrial transport1.01E-02
88GO:0042546: cell wall biogenesis1.13E-02
89GO:0006855: drug transmembrane transport1.23E-02
90GO:0031347: regulation of defense response1.26E-02
91GO:0009664: plant-type cell wall organization1.29E-02
92GO:0009809: lignin biosynthetic process1.36E-02
93GO:0009585: red, far-red light phototransduction1.36E-02
94GO:0006952: defense response1.38E-02
95GO:0006351: transcription, DNA-templated1.39E-02
96GO:0009909: regulation of flower development1.46E-02
97GO:0009553: embryo sac development1.71E-02
98GO:0018105: peptidyl-serine phosphorylation1.78E-02
99GO:0009742: brassinosteroid mediated signaling pathway1.82E-02
100GO:0009845: seed germination2.16E-02
101GO:0042744: hydrogen peroxide catabolic process2.24E-02
102GO:0016567: protein ubiquitination2.29E-02
103GO:0010150: leaf senescence2.57E-02
104GO:0009739: response to gibberellin2.79E-02
105GO:0071555: cell wall organization2.89E-02
106GO:0009658: chloroplast organization3.51E-02
107GO:0006970: response to osmotic stress3.70E-02
108GO:0048366: leaf development3.95E-02
109GO:0046777: protein autophosphorylation4.30E-02
RankGO TermAdjusted P value
1GO:0090440: abscisic acid transporter activity4.74E-05
2GO:0003712: transcription cofactor activity9.03E-05
3GO:0015117: thiosulfate transmembrane transporter activity1.17E-04
4GO:1901677: phosphate transmembrane transporter activity1.17E-04
5GO:0015141: succinate transmembrane transporter activity2.00E-04
6GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.00E-04
7GO:0004478: methionine adenosyltransferase activity2.00E-04
8GO:0005310: dicarboxylic acid transmembrane transporter activity2.00E-04
9GO:0004402: histone acetyltransferase activity2.22E-04
10GO:0015131: oxaloacetate transmembrane transporter activity2.94E-04
11GO:0004372: glycine hydroxymethyltransferase activity5.00E-04
12GO:0010427: abscisic acid binding6.13E-04
13GO:0005516: calmodulin binding6.66E-04
14GO:0003700: transcription factor activity, sequence-specific DNA binding6.79E-04
15GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides7.31E-04
16GO:0043565: sequence-specific DNA binding8.08E-04
17GO:0015140: malate transmembrane transporter activity8.54E-04
18GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting8.67E-04
19GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding9.89E-04
20GO:0044212: transcription regulatory region DNA binding1.04E-03
21GO:0031625: ubiquitin protein ligase binding1.31E-03
22GO:0004864: protein phosphatase inhibitor activity1.55E-03
23GO:0015116: sulfate transmembrane transporter activity1.86E-03
24GO:0015297: antiporter activity2.72E-03
25GO:0003714: transcription corepressor activity2.74E-03
26GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.32E-03
27GO:0001085: RNA polymerase II transcription factor binding4.37E-03
28GO:0004872: receptor activity4.81E-03
29GO:0016762: xyloglucan:xyloglucosyl transferase activity5.04E-03
30GO:0004806: triglyceride lipase activity7.28E-03
31GO:0016798: hydrolase activity, acting on glycosyl bonds7.28E-03
32GO:0015238: drug transmembrane transporter activity8.09E-03
33GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding8.65E-03
34GO:0016298: lipase activity1.39E-02
35GO:0015035: protein disulfide oxidoreductase activity1.78E-02
36GO:0003677: DNA binding1.87E-02
37GO:0016758: transferase activity, transferring hexosyl groups2.01E-02
38GO:0030170: pyridoxal phosphate binding2.20E-02
39GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.24E-02
40GO:0016757: transferase activity, transferring glycosyl groups2.64E-02
41GO:0004601: peroxidase activity3.51E-02
42GO:0003682: chromatin binding3.66E-02
43GO:0043531: ADP binding3.75E-02
44GO:0004842: ubiquitin-protein transferase activity3.98E-02
45GO:0004674: protein serine/threonine kinase activity4.17E-02
46GO:0004672: protein kinase activity4.23E-02
47GO:0020037: heme binding4.53E-02
48GO:0004871: signal transducer activity4.81E-02
49GO:0008270: zinc ion binding4.90E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0005615: extracellular space3.51E-04
3GO:0019005: SCF ubiquitin ligase complex5.59E-04
4GO:0048046: apoplast1.76E-03
5GO:0015629: actin cytoskeleton3.52E-03
6GO:0005770: late endosome4.37E-03
7GO:0005667: transcription factor complex7.01E-03
8GO:0009505: plant-type cell wall7.45E-03
9GO:0005618: cell wall8.32E-03
10GO:0005794: Golgi apparatus9.46E-03
11GO:0031902: late endosome membrane1.04E-02
12GO:0009506: plasmodesma1.67E-02
13GO:0005886: plasma membrane3.48E-02
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Gene type



Gene DE type