co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033231: carbohydrate export	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0042425: choline biosynthetic process	0.00E+00
6	GO:0010207: photosystem II assembly	3.62E-08
7	GO:0035304: regulation of protein dephosphorylation	4.01E-07
8	GO:0010205: photoinhibition	1.06E-06
9	GO:0019684: photosynthesis, light reaction	1.87E-06
10	GO:0015979: photosynthesis	2.26E-06
11	GO:0010438: cellular response to sulfur starvation	1.16E-05
12	GO:0042549: photosystem II stabilization	1.77E-05
13	GO:0010206: photosystem II repair	7.10E-05
14	GO:0015755: fructose transport	8.61E-05
15	GO:0006824: cobalt ion transport	8.61E-05
16	GO:0000476: maturation of 4.5S rRNA	8.61E-05
17	GO:0000967: rRNA 5'-end processing	8.61E-05
18	GO:0031338: regulation of vesicle fusion	8.61E-05
19	GO:0034337: RNA folding	8.61E-05
20	GO:1902334: fructose export from vacuole to cytoplasm	8.61E-05
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	8.61E-05
22	GO:0009773: photosynthetic electron transport in photosystem I	1.22E-04
23	GO:0034755: iron ion transmembrane transport	2.04E-04
24	GO:0018026: peptidyl-lysine monomethylation	2.04E-04
25	GO:0034470: ncRNA processing	2.04E-04
26	GO:0045493: xylan catabolic process	3.42E-04
27	GO:0090630: activation of GTPase activity	3.42E-04
28	GO:0010306: rhamnogalacturonan II biosynthetic process	4.92E-04
29	GO:0042938: dipeptide transport	6.55E-04
30	GO:0009755: hormone-mediated signaling pathway	6.55E-04
31	GO:0006656: phosphatidylcholine biosynthetic process	8.29E-04
32	GO:0009734: auxin-activated signaling pathway	8.38E-04
33	GO:0009913: epidermal cell differentiation	1.01E-03
34	GO:0010190: cytochrome b6f complex assembly	1.01E-03
35	GO:0009759: indole glucosinolate biosynthetic process	1.01E-03
36	GO:0010411: xyloglucan metabolic process	1.07E-03
37	GO:1901259: chloroplast rRNA processing	1.20E-03
38	GO:0031930: mitochondria-nucleus signaling pathway	1.20E-03
39	GO:0009942: longitudinal axis specification	1.20E-03
40	GO:0050829: defense response to Gram-negative bacterium	1.41E-03
41	GO:1900057: positive regulation of leaf senescence	1.41E-03
42	GO:0048528: post-embryonic root development	1.41E-03
43	GO:0005978: glycogen biosynthetic process	1.63E-03
44	GO:0009819: drought recovery	1.63E-03
45	GO:0046620: regulation of organ growth	1.63E-03
46	GO:0010439: regulation of glucosinolate biosynthetic process	1.63E-03
47	GO:2000070: regulation of response to water deprivation	1.63E-03
48	GO:0032544: plastid translation	1.86E-03
49	GO:0007389: pattern specification process	1.86E-03
50	GO:0009926: auxin polar transport	1.89E-03
51	GO:0006364: rRNA processing	2.54E-03
52	GO:0006995: cellular response to nitrogen starvation	2.61E-03
53	GO:0019538: protein metabolic process	2.61E-03
54	GO:0009682: induced systemic resistance	2.87E-03
55	GO:1903507: negative regulation of nucleic acid-templated transcription	2.87E-03
56	GO:0009750: response to fructose	2.87E-03
57	GO:0002213: defense response to insect	3.15E-03
58	GO:0015706: nitrate transport	3.15E-03
59	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.15E-03
60	GO:0010030: positive regulation of seed germination	4.03E-03
61	GO:0009833: plant-type primary cell wall biogenesis	4.34E-03
62	GO:0000162: tryptophan biosynthetic process	4.34E-03
63	GO:0007017: microtubule-based process	4.98E-03
64	GO:0016998: cell wall macromolecule catabolic process	5.32E-03
65	GO:0051260: protein homooligomerization	5.32E-03
66	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.66E-03
67	GO:0009625: response to insect	6.01E-03
68	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.01E-03
69	GO:0007623: circadian rhythm	6.18E-03
70	GO:0045490: pectin catabolic process	6.18E-03
71	GO:0009611: response to wounding	6.39E-03
72	GO:0070417: cellular response to cold	6.73E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.73E-03
74	GO:0042631: cellular response to water deprivation	7.10E-03
75	GO:0048868: pollen tube development	7.48E-03
76	GO:0009646: response to absence of light	7.87E-03
77	GO:0010183: pollen tube guidance	8.26E-03
78	GO:0048825: cotyledon development	8.26E-03
79	GO:0019252: starch biosynthetic process	8.26E-03
80	GO:0010193: response to ozone	8.66E-03
81	GO:0000302: response to reactive oxygen species	8.66E-03
82	GO:0010583: response to cyclopentenone	9.07E-03
83	GO:0009826: unidimensional cell growth	9.21E-03
84	GO:0010252: auxin homeostasis	9.91E-03
85	GO:0009828: plant-type cell wall loosening	9.91E-03
86	GO:0009860: pollen tube growth	1.03E-02
87	GO:0016311: dephosphorylation	1.31E-02
88	GO:0030244: cellulose biosynthetic process	1.35E-02
89	GO:0000160: phosphorelay signal transduction system	1.40E-02
90	GO:0007568: aging	1.50E-02
91	GO:0071555: cell wall organization	1.52E-02
92	GO:0009867: jasmonic acid mediated signaling pathway	1.60E-02
93	GO:0034599: cellular response to oxidative stress	1.65E-02
94	GO:0009733: response to auxin	1.76E-02
95	GO:0009753: response to jasmonic acid	1.89E-02
96	GO:0042546: cell wall biogenesis	1.97E-02
97	GO:0009644: response to high light intensity	2.02E-02
98	GO:0031347: regulation of defense response	2.19E-02
99	GO:0009409: response to cold	2.23E-02
100	GO:0009664: plant-type cell wall organization	2.25E-02
101	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.33E-02
102	GO:0009585: red, far-red light phototransduction	2.37E-02
103	GO:0009736: cytokinin-activated signaling pathway	2.37E-02
104	GO:0010224: response to UV-B	2.43E-02
105	GO:0006857: oligopeptide transport	2.49E-02
106	GO:0009735: response to cytokinin	2.85E-02
107	GO:0042545: cell wall modification	2.98E-02
108	GO:0009624: response to nematode	3.04E-02
109	GO:0009845: seed germination	3.78E-02
110	GO:0042744: hydrogen peroxide catabolic process	3.92E-02
111	GO:0009739: response to gibberellin	4.86E-02
112	GO:0007166: cell surface receptor signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010242: oxygen evolving activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
4	GO:0015284: fructose uniporter activity	0.00E+00
5	GO:0008266: poly(U) RNA binding	3.81E-06
6	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	8.61E-05
7	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	8.61E-05
8	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.61E-05
9	GO:0005353: fructose transmembrane transporter activity	2.04E-04
10	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.04E-04
11	GO:0016868: intramolecular transferase activity, phosphotransferases	2.04E-04
12	GO:0009044: xylan 1,4-beta-xylosidase activity	6.55E-04
13	GO:0008878: glucose-1-phosphate adenylyltransferase activity	6.55E-04
14	GO:0046556: alpha-L-arabinofuranosidase activity	6.55E-04
15	GO:0016279: protein-lysine N-methyltransferase activity	6.55E-04
16	GO:0042936: dipeptide transporter activity	6.55E-04
17	GO:0017137: Rab GTPase binding	8.29E-04
18	GO:0016846: carbon-sulfur lyase activity	8.29E-04
19	GO:0004130: cytochrome-c peroxidase activity	1.01E-03
20	GO:0005381: iron ion transmembrane transporter activity	2.35E-03
21	GO:0009672: auxin:proton symporter activity	2.35E-03
22	GO:0047372: acylglycerol lipase activity	2.87E-03
23	GO:0010329: auxin efflux transmembrane transporter activity	3.43E-03
24	GO:0031072: heat shock protein binding	3.43E-03
25	GO:0051119: sugar transmembrane transporter activity	4.03E-03
26	GO:0019843: rRNA binding	4.49E-03
27	GO:0003714: transcription corepressor activity	4.65E-03
28	GO:0005528: FK506 binding	4.65E-03
29	GO:0030570: pectate lyase activity	6.01E-03
30	GO:0016760: cellulose synthase (UDP-forming) activity	6.01E-03
31	GO:0003756: protein disulfide isomerase activity	6.36E-03
32	GO:0019901: protein kinase binding	8.26E-03
33	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.66E-03
34	GO:0000156: phosphorelay response regulator activity	9.48E-03
35	GO:0016759: cellulose synthase activity	9.91E-03
36	GO:0005200: structural constituent of cytoskeleton	1.03E-02
37	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.26E-02
38	GO:0008236: serine-type peptidase activity	1.31E-02
39	GO:0005509: calcium ion binding	1.38E-02
40	GO:0005096: GTPase activator activity	1.40E-02
41	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.42E-02
42	GO:0030145: manganese ion binding	1.50E-02
43	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.59E-02
44	GO:0003993: acid phosphatase activity	1.65E-02
45	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.70E-02
46	GO:0005215: transporter activity	1.73E-02
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-02
48	GO:0008289: lipid binding	2.45E-02
49	GO:0045330: aspartyl esterase activity	2.55E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.73E-02
51	GO:0005515: protein binding	2.75E-02
52	GO:0030599: pectinesterase activity	2.92E-02
53	GO:0051082: unfolded protein binding	3.04E-02
54	GO:0008026: ATP-dependent helicase activity	3.17E-02
55	GO:0016829: lyase activity	3.78E-02
56	GO:0004252: serine-type endopeptidase activity	3.85E-02
57	GO:0046910: pectinesterase inhibitor activity	4.27E-02
58	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02
59	GO:0005516: calmodulin binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	7.06E-22
2	GO:0009535: chloroplast thylakoid membrane	2.97E-18
3	GO:0009543: chloroplast thylakoid lumen	1.38E-14
4	GO:0009507: chloroplast	6.25E-14
5	GO:0009579: thylakoid	1.10E-12
6	GO:0030095: chloroplast photosystem II	2.43E-10
7	GO:0031977: thylakoid lumen	3.34E-09
8	GO:0009538: photosystem I reaction center	3.64E-07
9	GO:0030093: chloroplast photosystem I	4.01E-07
10	GO:0010287: plastoglobule	1.99E-06
11	GO:0009654: photosystem II oxygen evolving complex	8.15E-06
12	GO:0019898: extrinsic component of membrane	2.81E-05
13	GO:0009570: chloroplast stroma	1.62E-04
14	GO:0042646: plastid nucleoid	4.92E-04
15	GO:0009522: photosystem I	5.62E-04
16	GO:0055035: plastid thylakoid membrane	8.29E-04
17	GO:0009941: chloroplast envelope	9.67E-04
18	GO:0016363: nuclear matrix	1.20E-03
19	GO:0009533: chloroplast stromal thylakoid	1.41E-03
20	GO:0045298: tubulin complex	2.10E-03
21	GO:0008180: COP9 signalosome	2.10E-03
22	GO:0005618: cell wall	2.38E-03
23	GO:0032040: small-subunit processome	3.15E-03
24	GO:0009508: plastid chromosome	3.43E-03
25	GO:0009523: photosystem II	8.26E-03
26	GO:0071944: cell periphery	9.48E-03
27	GO:0009295: nucleoid	1.03E-02
28	GO:0005622: intracellular	1.29E-02
29	GO:0019005: SCF ubiquitin ligase complex	1.35E-02
30	GO:0016020: membrane	1.64E-02
31	GO:0000502: proteasome complex	2.37E-02
32	GO:0048046: apoplast	2.40E-02
33	GO:0012505: endomembrane system	2.98E-02
34	GO:0005623: cell	3.64E-02
35	GO:0009705: plant-type vacuole membrane	4.49E-02
36	GO:0016021: integral component of membrane	4.52E-02