Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49470

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0006642: triglyceride mobilization0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0010394: homogalacturonan metabolic process0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0015822: ornithine transport0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0006223: uracil salvage0.00E+00
10GO:0019253: reductive pentose-phosphate cycle2.28E-08
11GO:0009658: chloroplast organization4.93E-08
12GO:0015976: carbon utilization3.53E-07
13GO:0042026: protein refolding2.71E-06
14GO:0006096: glycolytic process3.27E-06
15GO:0016117: carotenoid biosynthetic process1.05E-05
16GO:0006633: fatty acid biosynthetic process2.06E-05
17GO:0018119: peptidyl-cysteine S-nitrosylation3.01E-05
18GO:0009409: response to cold5.20E-05
19GO:0006546: glycine catabolic process5.21E-05
20GO:0019464: glycine decarboxylation via glycine cleavage system5.21E-05
21GO:0016123: xanthophyll biosynthetic process8.25E-05
22GO:0010190: cytochrome b6f complex assembly1.20E-04
23GO:0007005: mitochondrion organization1.44E-04
24GO:0006458: 'de novo' protein folding1.64E-04
25GO:0009416: response to light stimulus2.58E-04
26GO:0006438: valyl-tRNA aminoacylation2.80E-04
27GO:0071370: cellular response to gibberellin stimulus2.80E-04
28GO:0010480: microsporocyte differentiation2.80E-04
29GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.80E-04
30GO:0042547: cell wall modification involved in multidimensional cell growth2.80E-04
31GO:0045488: pectin metabolic process2.80E-04
32GO:0000066: mitochondrial ornithine transport2.80E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.80E-04
34GO:0046686: response to cadmium ion3.34E-04
35GO:0032544: plastid translation3.35E-04
36GO:0071482: cellular response to light stimulus3.35E-04
37GO:0048829: root cap development5.60E-04
38GO:0060919: auxin influx6.14E-04
39GO:0080183: response to photooxidative stress6.14E-04
40GO:0030388: fructose 1,6-bisphosphate metabolic process6.14E-04
41GO:0010275: NAD(P)H dehydrogenase complex assembly6.14E-04
42GO:0006352: DNA-templated transcription, initiation6.45E-04
43GO:0000038: very long-chain fatty acid metabolic process6.45E-04
44GO:0006094: gluconeogenesis8.37E-04
45GO:0009767: photosynthetic electron transport chain8.37E-04
46GO:0015979: photosynthesis9.23E-04
47GO:0010020: chloroplast fission9.39E-04
48GO:0019563: glycerol catabolic process9.96E-04
49GO:0006518: peptide metabolic process9.96E-04
50GO:0006696: ergosterol biosynthetic process9.96E-04
51GO:2001295: malonyl-CoA biosynthetic process9.96E-04
52GO:0032504: multicellular organism reproduction9.96E-04
53GO:0006000: fructose metabolic process9.96E-04
54GO:0019344: cysteine biosynthetic process1.29E-03
55GO:0010731: protein glutathionylation1.42E-03
56GO:0006424: glutamyl-tRNA aminoacylation1.42E-03
57GO:0016556: mRNA modification1.42E-03
58GO:2001141: regulation of RNA biosynthetic process1.42E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.42E-03
60GO:0051085: chaperone mediated protein folding requiring cofactor1.42E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.42E-03
62GO:0006418: tRNA aminoacylation for protein translation1.42E-03
63GO:0003333: amino acid transmembrane transport1.56E-03
64GO:0061077: chaperone-mediated protein folding1.56E-03
65GO:0006730: one-carbon metabolic process1.70E-03
66GO:0080092: regulation of pollen tube growth1.70E-03
67GO:0044206: UMP salvage1.91E-03
68GO:0071483: cellular response to blue light1.91E-03
69GO:0010037: response to carbon dioxide1.91E-03
70GO:0006542: glutamine biosynthetic process1.91E-03
71GO:0019676: ammonia assimilation cycle1.91E-03
72GO:0009765: photosynthesis, light harvesting1.91E-03
73GO:0045727: positive regulation of translation1.91E-03
74GO:2000122: negative regulation of stomatal complex development1.91E-03
75GO:0042335: cuticle development2.36E-03
76GO:0080022: primary root development2.36E-03
77GO:0016120: carotene biosynthetic process2.43E-03
78GO:0032543: mitochondrial translation2.43E-03
79GO:0043097: pyrimidine nucleoside salvage2.43E-03
80GO:0010236: plastoquinone biosynthetic process2.43E-03
81GO:0045489: pectin biosynthetic process2.54E-03
82GO:0008360: regulation of cell shape2.54E-03
83GO:0006810: transport2.95E-03
84GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.00E-03
85GO:0006206: pyrimidine nucleobase metabolic process3.00E-03
86GO:0042549: photosystem II stabilization3.00E-03
87GO:0006555: methionine metabolic process3.00E-03
88GO:0070814: hydrogen sulfide biosynthetic process3.00E-03
89GO:0010583: response to cyclopentenone3.35E-03
90GO:0009735: response to cytokinin3.39E-03
91GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.54E-03
92GO:0017148: negative regulation of translation3.62E-03
93GO:0009854: oxidative photosynthetic carbon pathway3.62E-03
94GO:0010555: response to mannitol3.62E-03
95GO:0006400: tRNA modification4.26E-03
96GO:0030497: fatty acid elongation4.26E-03
97GO:0048437: floral organ development4.26E-03
98GO:0010027: thylakoid membrane organization4.53E-03
99GO:0009642: response to light intensity4.95E-03
100GO:0052543: callose deposition in cell wall4.95E-03
101GO:0007155: cell adhesion4.95E-03
102GO:0048564: photosystem I assembly4.95E-03
103GO:0008610: lipid biosynthetic process4.95E-03
104GO:0048193: Golgi vesicle transport5.67E-03
105GO:0009657: plastid organization5.67E-03
106GO:0006526: arginine biosynthetic process5.67E-03
107GO:0006002: fructose 6-phosphate metabolic process5.67E-03
108GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.67E-03
109GO:0010206: photosystem II repair6.43E-03
110GO:0006754: ATP biosynthetic process6.43E-03
111GO:0048589: developmental growth6.43E-03
112GO:0000902: cell morphogenesis6.43E-03
113GO:0045490: pectin catabolic process6.50E-03
114GO:0055114: oxidation-reduction process6.98E-03
115GO:0006865: amino acid transport7.16E-03
116GO:0035999: tetrahydrofolate interconversion7.22E-03
117GO:0016051: carbohydrate biosynthetic process7.49E-03
118GO:0009853: photorespiration7.49E-03
119GO:0009870: defense response signaling pathway, resistance gene-dependent8.04E-03
120GO:0006535: cysteine biosynthetic process from serine8.04E-03
121GO:0000103: sulfate assimilation8.04E-03
122GO:0010192: mucilage biosynthetic process8.04E-03
123GO:0009970: cellular response to sulfate starvation8.04E-03
124GO:0006839: mitochondrial transport8.54E-03
125GO:0009073: aromatic amino acid family biosynthetic process8.90E-03
126GO:0006415: translational termination8.90E-03
127GO:0000272: polysaccharide catabolic process8.90E-03
128GO:0048229: gametophyte development8.90E-03
129GO:0019684: photosynthesis, light reaction8.90E-03
130GO:0009773: photosynthetic electron transport in photosystem I8.90E-03
131GO:0009744: response to sucrose9.67E-03
132GO:0045037: protein import into chloroplast stroma9.79E-03
133GO:0006006: glucose metabolic process1.07E-02
134GO:0010075: regulation of meristem growth1.07E-02
135GO:0005986: sucrose biosynthetic process1.07E-02
136GO:0009636: response to toxic substance1.09E-02
137GO:0009934: regulation of meristem structural organization1.17E-02
138GO:0010207: photosystem II assembly1.17E-02
139GO:0005985: sucrose metabolic process1.26E-02
140GO:0090351: seedling development1.26E-02
141GO:0042742: defense response to bacterium1.36E-02
142GO:0010025: wax biosynthetic process1.37E-02
143GO:0006636: unsaturated fatty acid biosynthetic process1.37E-02
144GO:0009833: plant-type primary cell wall biogenesis1.37E-02
145GO:0007010: cytoskeleton organization1.47E-02
146GO:0009116: nucleoside metabolic process1.47E-02
147GO:0007017: microtubule-based process1.58E-02
148GO:0009814: defense response, incompatible interaction1.80E-02
149GO:0042545: cell wall modification1.81E-02
150GO:0040007: growth1.91E-02
151GO:0006457: protein folding2.13E-02
152GO:0009793: embryo development ending in seed dormancy2.14E-02
153GO:0000271: polysaccharide biosynthetic process2.27E-02
154GO:0000413: protein peptidyl-prolyl isomerization2.27E-02
155GO:0048653: anther development2.27E-02
156GO:0042631: cellular response to water deprivation2.27E-02
157GO:0048868: pollen tube development2.39E-02
158GO:0019252: starch biosynthetic process2.65E-02
159GO:0009790: embryo development2.73E-02
160GO:0032502: developmental process2.91E-02
161GO:0071805: potassium ion transmembrane transport3.33E-02
162GO:0010286: heat acclimation3.33E-02
163GO:0016126: sterol biosynthetic process3.62E-02
164GO:0009627: systemic acquired resistance3.91E-02
165GO:0042128: nitrate assimilation3.91E-02
166GO:0030244: cellulose biosynthetic process4.37E-02
167GO:0008219: cell death4.37E-02
168GO:0048481: plant ovule development4.37E-02
169GO:0009817: defense response to fungus, incompatible interaction4.37E-02
170GO:0009832: plant-type cell wall biogenesis4.52E-02
171GO:0010311: lateral root formation4.52E-02
172GO:0048767: root hair elongation4.52E-02
173GO:0009407: toxin catabolic process4.68E-02
174GO:0007568: aging4.84E-02
175GO:0010119: regulation of stomatal movement4.84E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0004358: glutamate N-acetyltransferase activity0.00E+00
10GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
11GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
14GO:0004148: dihydrolipoyl dehydrogenase activity1.29E-05
15GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.89E-05
16GO:0004375: glycine dehydrogenase (decarboxylating) activity2.89E-05
17GO:0044183: protein binding involved in protein folding3.01E-05
18GO:0004089: carbonate dehydratase activity4.67E-05
19GO:0001053: plastid sigma factor activity5.21E-05
20GO:0016987: sigma factor activity5.21E-05
21GO:0010328: auxin influx transmembrane transporter activity5.21E-05
22GO:0102337: 3-oxo-cerotoyl-CoA synthase activity8.05E-05
23GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity8.05E-05
24GO:0102336: 3-oxo-arachidoyl-CoA synthase activity8.05E-05
25GO:0009922: fatty acid elongase activity8.25E-05
26GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.64E-04
27GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.80E-04
28GO:0051996: squalene synthase activity2.80E-04
29GO:0010313: phytochrome binding2.80E-04
30GO:0004832: valine-tRNA ligase activity2.80E-04
31GO:0004807: triose-phosphate isomerase activity2.80E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.80E-04
33GO:0051082: unfolded protein binding5.45E-04
34GO:0000064: L-ornithine transmembrane transporter activity6.14E-04
35GO:0004802: transketolase activity6.14E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.14E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.14E-04
38GO:0050017: L-3-cyanoalanine synthase activity6.14E-04
39GO:0010291: carotene beta-ring hydroxylase activity6.14E-04
40GO:0042389: omega-3 fatty acid desaturase activity6.14E-04
41GO:0004618: phosphoglycerate kinase activity6.14E-04
42GO:0010297: heteropolysaccharide binding6.14E-04
43GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.14E-04
44GO:0004047: aminomethyltransferase activity6.14E-04
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.14E-04
46GO:0005089: Rho guanyl-nucleotide exchange factor activity6.45E-04
47GO:0002161: aminoacyl-tRNA editing activity9.96E-04
48GO:0004075: biotin carboxylase activity9.96E-04
49GO:0004751: ribose-5-phosphate isomerase activity9.96E-04
50GO:0030267: glyoxylate reductase (NADP) activity9.96E-04
51GO:0004781: sulfate adenylyltransferase (ATP) activity9.96E-04
52GO:0016149: translation release factor activity, codon specific1.42E-03
53GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.42E-03
54GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.42E-03
55GO:0001872: (1->3)-beta-D-glucan binding1.42E-03
56GO:0048027: mRNA 5'-UTR binding1.42E-03
57GO:0005198: structural molecule activity1.64E-03
58GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.72E-03
59GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.91E-03
60GO:0004845: uracil phosphoribosyltransferase activity1.91E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.91E-03
62GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.91E-03
63GO:0004812: aminoacyl-tRNA ligase activity2.19E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor2.43E-03
65GO:0004356: glutamate-ammonia ligase activity2.43E-03
66GO:0003989: acetyl-CoA carboxylase activity2.43E-03
67GO:0008374: O-acyltransferase activity2.43E-03
68GO:0050662: coenzyme binding2.73E-03
69GO:0042578: phosphoric ester hydrolase activity3.00E-03
70GO:0080030: methyl indole-3-acetate esterase activity3.00E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.62E-03
72GO:0004124: cysteine synthase activity3.62E-03
73GO:0004849: uridine kinase activity3.62E-03
74GO:0005200: structural constituent of cytoskeleton4.03E-03
75GO:0004033: aldo-keto reductase (NADP) activity4.95E-03
76GO:0004564: beta-fructofuranosidase activity4.95E-03
77GO:0008236: serine-type peptidase activity5.62E-03
78GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.67E-03
79GO:0003843: 1,3-beta-D-glucan synthase activity5.67E-03
80GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.43E-03
81GO:0003747: translation release factor activity6.43E-03
82GO:0004575: sucrose alpha-glucosidase activity7.22E-03
83GO:0003746: translation elongation factor activity7.49E-03
84GO:0003729: mRNA binding9.20E-03
85GO:0004364: glutathione transferase activity9.29E-03
86GO:0000049: tRNA binding9.79E-03
87GO:0051537: 2 iron, 2 sulfur cluster binding1.05E-02
88GO:0004565: beta-galactosidase activity1.07E-02
89GO:0031072: heat shock protein binding1.07E-02
90GO:0015293: symporter activity1.09E-02
91GO:0005509: calcium ion binding1.18E-02
92GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.31E-02
93GO:0015171: amino acid transmembrane transporter activity1.45E-02
94GO:0045330: aspartyl esterase activity1.45E-02
95GO:0005528: FK506 binding1.47E-02
96GO:0015079: potassium ion transmembrane transporter activity1.58E-02
97GO:0033612: receptor serine/threonine kinase binding1.68E-02
98GO:0019706: protein-cysteine S-palmitoyltransferase activity1.68E-02
99GO:0030599: pectinesterase activity1.76E-02
100GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.80E-02
101GO:0016760: cellulose synthase (UDP-forming) activity1.91E-02
102GO:0030570: pectate lyase activity1.91E-02
103GO:0016746: transferase activity, transferring acyl groups1.92E-02
104GO:0016740: transferase activity1.95E-02
105GO:0003756: protein disulfide isomerase activity2.03E-02
106GO:0016758: transferase activity, transferring hexosyl groups2.27E-02
107GO:0019843: rRNA binding2.34E-02
108GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.40E-02
109GO:0003924: GTPase activity2.44E-02
110GO:0005524: ATP binding2.58E-02
111GO:0048038: quinone binding2.78E-02
112GO:0004518: nuclease activity2.91E-02
113GO:0005525: GTP binding3.03E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.05E-02
115GO:0016759: cellulose synthase activity3.19E-02
116GO:0008483: transaminase activity3.33E-02
117GO:0016722: oxidoreductase activity, oxidizing metal ions3.33E-02
118GO:0016597: amino acid binding3.47E-02
119GO:0030247: polysaccharide binding4.06E-02
120GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.21E-02
121GO:0004222: metalloendopeptidase activity4.68E-02
122GO:0050897: cobalt ion binding4.84E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0009507: chloroplast7.13E-40
4GO:0009941: chloroplast envelope1.71E-28
5GO:0009570: chloroplast stroma2.74E-28
6GO:0009535: chloroplast thylakoid membrane5.73E-18
7GO:0009579: thylakoid2.03E-15
8GO:0009543: chloroplast thylakoid lumen2.20E-12
9GO:0009654: photosystem II oxygen evolving complex1.24E-09
10GO:0031977: thylakoid lumen2.20E-08
11GO:0048046: apoplast2.30E-07
12GO:0019898: extrinsic component of membrane6.64E-07
13GO:0030095: chloroplast photosystem II1.48E-06
14GO:0010319: stromule1.61E-06
15GO:0009534: chloroplast thylakoid1.43E-05
16GO:0005960: glycine cleavage complex2.89E-05
17GO:0022626: cytosolic ribosome4.27E-05
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.80E-04
19GO:0045298: tubulin complex4.05E-04
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.05E-04
21GO:0042170: plastid membrane6.14E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex6.14E-04
23GO:0045254: pyruvate dehydrogenase complex6.14E-04
24GO:0031969: chloroplast membrane7.33E-04
25GO:0005775: vacuolar lumen1.42E-03
26GO:0009536: plastid1.99E-03
27GO:0009505: plant-type cell wall2.08E-03
28GO:0009706: chloroplast inner membrane3.24E-03
29GO:0009295: nucleoid4.03E-03
30GO:0009539: photosystem II reaction center5.67E-03
31GO:0000148: 1,3-beta-D-glucan synthase complex5.67E-03
32GO:0005759: mitochondrial matrix5.76E-03
33GO:0016324: apical plasma membrane8.04E-03
34GO:0046658: anchored component of plasma membrane9.29E-03
35GO:0009508: plastid chromosome1.07E-02
36GO:0030659: cytoplasmic vesicle membrane1.17E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.26E-02
38GO:0042651: thylakoid membrane1.58E-02
39GO:0009532: plastid stroma1.68E-02
40GO:0010287: plastoglobule2.21E-02
41GO:0005618: cell wall2.44E-02
42GO:0009523: photosystem II2.65E-02
43GO:0009506: plasmodesma3.51E-02
44GO:0005840: ribosome4.38E-02
45GO:0005773: vacuole4.39E-02
46GO:0016020: membrane4.52E-02
47GO:0000325: plant-type vacuole4.84E-02
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Gene type



Gene DE type