co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0048227: plasma membrane to endosome transport	0.00E+00
3	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
4	GO:0006468: protein phosphorylation	1.28E-06
5	GO:0080142: regulation of salicylic acid biosynthetic process	1.51E-05
6	GO:0006952: defense response	4.25E-05
7	GO:0034975: protein folding in endoplasmic reticulum	1.35E-04
8	GO:0051245: negative regulation of cellular defense response	1.35E-04
9	GO:0006422: aspartyl-tRNA aminoacylation	1.35E-04
10	GO:1990022: RNA polymerase III complex localization to nucleus	1.35E-04
11	GO:0044376: RNA polymerase II complex import to nucleus	1.35E-04
12	GO:0009816: defense response to bacterium, incompatible interaction	1.51E-04
13	GO:0043069: negative regulation of programmed cell death	2.00E-04
14	GO:0015031: protein transport	2.04E-04
15	GO:0015914: phospholipid transport	3.11E-04
16	GO:0080185: effector dependent induction by symbiont of host immune response	3.11E-04
17	GO:1902000: homogentisate catabolic process	3.11E-04
18	GO:0008535: respiratory chain complex IV assembly	3.11E-04
19	GO:0002221: pattern recognition receptor signaling pathway	3.11E-04
20	GO:0007166: cell surface receptor signaling pathway	3.17E-04
21	GO:0009617: response to bacterium	3.39E-04
22	GO:0009863: salicylic acid mediated signaling pathway	4.84E-04
23	GO:0009410: response to xenobiotic stimulus	5.13E-04
24	GO:0010272: response to silver ion	5.13E-04
25	GO:0009072: aromatic amino acid family metabolic process	5.13E-04
26	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.13E-04
27	GO:0002230: positive regulation of defense response to virus by host	5.13E-04
28	GO:0042742: defense response to bacterium	5.41E-04
29	GO:0071456: cellular response to hypoxia	6.38E-04
30	GO:0009814: defense response, incompatible interaction	6.38E-04
31	GO:0030433: ubiquitin-dependent ERAD pathway	6.38E-04
32	GO:0009737: response to abscisic acid	6.79E-04
33	GO:0035556: intracellular signal transduction	7.12E-04
34	GO:0019438: aromatic compound biosynthetic process	7.34E-04
35	GO:0048194: Golgi vesicle budding	7.34E-04
36	GO:0033014: tetrapyrrole biosynthetic process	7.34E-04
37	GO:0006612: protein targeting to membrane	7.34E-04
38	GO:0071323: cellular response to chitin	7.34E-04
39	GO:1902290: positive regulation of defense response to oomycetes	7.34E-04
40	GO:0001676: long-chain fatty acid metabolic process	7.34E-04
41	GO:0006886: intracellular protein transport	9.69E-04
42	GO:0010363: regulation of plant-type hypersensitive response	9.73E-04
43	GO:0061025: membrane fusion	1.01E-03
44	GO:0009697: salicylic acid biosynthetic process	1.23E-03
45	GO:0010405: arabinogalactan protein metabolic process	1.51E-03
46	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.51E-03
47	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.51E-03
48	GO:0009615: response to virus	1.64E-03
49	GO:0010150: leaf senescence	1.76E-03
50	GO:0010555: response to mannitol	1.81E-03
51	GO:2000067: regulation of root morphogenesis	1.81E-03
52	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.81E-03
53	GO:0000911: cytokinesis by cell plate formation	1.81E-03
54	GO:0009612: response to mechanical stimulus	1.81E-03
55	GO:0006694: steroid biosynthetic process	1.81E-03
56	GO:0009627: systemic acquired resistance	1.83E-03
57	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.03E-03
58	GO:0043090: amino acid import	2.12E-03
59	GO:1900056: negative regulation of leaf senescence	2.12E-03
60	GO:1900057: positive regulation of leaf senescence	2.12E-03
61	GO:0006400: tRNA modification	2.12E-03
62	GO:0009407: toxin catabolic process	2.35E-03
63	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.46E-03
64	GO:0009819: drought recovery	2.46E-03
65	GO:0030162: regulation of proteolysis	2.46E-03
66	GO:0006865: amino acid transport	2.58E-03
67	GO:0043562: cellular response to nitrogen levels	2.81E-03
68	GO:0009699: phenylpropanoid biosynthetic process	2.81E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	2.81E-03
70	GO:0006367: transcription initiation from RNA polymerase II promoter	2.81E-03
71	GO:0009821: alkaloid biosynthetic process	3.17E-03
72	GO:0006783: heme biosynthetic process	3.17E-03
73	GO:0010112: regulation of systemic acquired resistance	3.17E-03
74	GO:1900426: positive regulation of defense response to bacterium	3.55E-03
75	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.55E-03
76	GO:0009636: response to toxic substance	3.89E-03
77	GO:0000103: sulfate assimilation	3.95E-03
78	GO:0006032: chitin catabolic process	3.95E-03
79	GO:0000272: polysaccharide catabolic process	4.36E-03
80	GO:0009750: response to fructose	4.36E-03
81	GO:0030148: sphingolipid biosynthetic process	4.36E-03
82	GO:0006790: sulfur compound metabolic process	4.79E-03
83	GO:0015706: nitrate transport	4.79E-03
84	GO:0002237: response to molecule of bacterial origin	5.68E-03
85	GO:0009620: response to fungus	6.05E-03
86	GO:0010053: root epidermal cell differentiation	6.14E-03
87	GO:0042343: indole glucosinolate metabolic process	6.14E-03
88	GO:0010167: response to nitrate	6.14E-03
89	GO:0070588: calcium ion transmembrane transport	6.14E-03
90	GO:0046854: phosphatidylinositol phosphorylation	6.14E-03
91	GO:0018105: peptidyl-serine phosphorylation	6.82E-03
92	GO:0080147: root hair cell development	7.11E-03
93	GO:2000377: regulation of reactive oxygen species metabolic process	7.11E-03
94	GO:0016575: histone deacetylation	7.62E-03
95	GO:0098542: defense response to other organism	8.14E-03
96	GO:0048278: vesicle docking	8.14E-03
97	GO:0003333: amino acid transmembrane transport	8.14E-03
98	GO:0016998: cell wall macromolecule catabolic process	8.14E-03
99	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.67E-03
100	GO:0009625: response to insect	9.21E-03
101	GO:0055114: oxidation-reduction process	9.31E-03
102	GO:0009790: embryo development	9.68E-03
103	GO:0009306: protein secretion	9.77E-03
104	GO:0042631: cellular response to water deprivation	1.09E-02
105	GO:0010305: leaf vascular tissue pattern formation	1.15E-02
106	GO:0006662: glycerol ether metabolic process	1.15E-02
107	GO:0009646: response to absence of light	1.21E-02
108	GO:0048544: recognition of pollen	1.21E-02
109	GO:0006623: protein targeting to vacuole	1.27E-02
110	GO:0009749: response to glucose	1.27E-02
111	GO:0010193: response to ozone	1.34E-02
112	GO:0000302: response to reactive oxygen species	1.34E-02
113	GO:0006891: intra-Golgi vesicle-mediated transport	1.34E-02
114	GO:0007264: small GTPase mediated signal transduction	1.40E-02
115	GO:0006464: cellular protein modification process	1.53E-02
116	GO:0009607: response to biotic stimulus	1.80E-02
117	GO:0042128: nitrate assimilation	1.88E-02
118	GO:0006906: vesicle fusion	1.88E-02
119	GO:0015995: chlorophyll biosynthetic process	1.95E-02
120	GO:0016311: dephosphorylation	2.02E-02
121	GO:0009723: response to ethylene	2.06E-02
122	GO:0009817: defense response to fungus, incompatible interaction	2.09E-02
123	GO:0008219: cell death	2.09E-02
124	GO:0080167: response to karrikin	2.21E-02
125	GO:0006499: N-terminal protein myristoylation	2.24E-02
126	GO:0016192: vesicle-mediated transport	2.32E-02
127	GO:0007568: aging	2.32E-02
128	GO:0046777: protein autophosphorylation	2.36E-02
129	GO:0009867: jasmonic acid mediated signaling pathway	2.48E-02
130	GO:0045087: innate immune response	2.48E-02
131	GO:0034599: cellular response to oxidative stress	2.56E-02
132	GO:0006887: exocytosis	2.80E-02
133	GO:0006631: fatty acid metabolic process	2.80E-02
134	GO:0042542: response to hydrogen peroxide	2.88E-02
135	GO:0009744: response to sucrose	2.97E-02
136	GO:0051707: response to other organism	2.97E-02
137	GO:0032259: methylation	3.12E-02
138	GO:0006979: response to oxidative stress	3.34E-02
139	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.40E-02
140	GO:0042538: hyperosmotic salinity response	3.49E-02
141	GO:0009809: lignin biosynthetic process	3.67E-02
142	GO:0006486: protein glycosylation	3.67E-02
143	GO:0009626: plant-type hypersensitive response	4.32E-02
144	GO:0050832: defense response to fungus	4.42E-02
145	GO:0009742: brassinosteroid mediated signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
3	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
4	GO:0051670: inulinase activity	0.00E+00
5	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
6	GO:0005524: ATP binding	2.04E-07
7	GO:0004674: protein serine/threonine kinase activity	2.62E-05
8	GO:0005516: calmodulin binding	4.87E-05
9	GO:0016301: kinase activity	6.98E-05
10	GO:1901149: salicylic acid binding	1.35E-04
11	GO:0015085: calcium ion transmembrane transporter activity	1.35E-04
12	GO:0004815: aspartate-tRNA ligase activity	1.35E-04
13	GO:0051669: fructan beta-fructosidase activity	1.35E-04
14	GO:0004325: ferrochelatase activity	1.35E-04
15	GO:0031219: levanase activity	1.35E-04
16	GO:0004683: calmodulin-dependent protein kinase activity	1.76E-04
17	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.27E-04
18	GO:0050736: O-malonyltransferase activity	3.11E-04
19	GO:0045140: inositol phosphoceramide synthase activity	3.11E-04
20	GO:0008061: chitin binding	3.91E-04
21	GO:0001664: G-protein coupled receptor binding	5.13E-04
22	GO:0005093: Rab GDP-dissociation inhibitor activity	5.13E-04
23	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	5.13E-04
24	GO:0031683: G-protein beta/gamma-subunit complex binding	5.13E-04
25	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.13E-04
26	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-03
27	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.51E-03
28	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.51E-03
29	GO:0036402: proteasome-activating ATPase activity	1.51E-03
30	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.81E-03
31	GO:0102391: decanoate--CoA ligase activity	1.81E-03
32	GO:0004012: phospholipid-translocating ATPase activity	1.81E-03
33	GO:0004656: procollagen-proline 4-dioxygenase activity	1.81E-03
34	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.83E-03
35	GO:0008320: protein transmembrane transporter activity	2.12E-03
36	GO:0004467: long-chain fatty acid-CoA ligase activity	2.12E-03
37	GO:0052747: sinapyl alcohol dehydrogenase activity	2.46E-03
38	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.81E-03
39	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.94E-03
40	GO:0004364: glutathione transferase activity	3.33E-03
41	GO:0005484: SNAP receptor activity	3.47E-03
42	GO:0016844: strictosidine synthase activity	3.55E-03
43	GO:0015112: nitrate transmembrane transporter activity	3.55E-03
44	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.55E-03
45	GO:0004568: chitinase activity	3.95E-03
46	GO:0008171: O-methyltransferase activity	3.95E-03
47	GO:0004713: protein tyrosine kinase activity	3.95E-03
48	GO:0008378: galactosyltransferase activity	4.79E-03
49	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.79E-03
50	GO:0015171: amino acid transmembrane transporter activity	5.15E-03
51	GO:0005388: calcium-transporting ATPase activity	5.22E-03
52	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.22E-03
53	GO:0004871: signal transducer activity	5.35E-03
54	GO:0004190: aspartic-type endopeptidase activity	6.14E-03
55	GO:0017025: TBP-class protein binding	6.14E-03
56	GO:0015035: protein disulfide oxidoreductase activity	6.82E-03
57	GO:0031418: L-ascorbic acid binding	7.11E-03
58	GO:0003954: NADH dehydrogenase activity	7.11E-03
59	GO:0004407: histone deacetylase activity	7.11E-03
60	GO:0004707: MAP kinase activity	8.14E-03
61	GO:0003756: protein disulfide isomerase activity	9.77E-03
62	GO:0047134: protein-disulfide reductase activity	1.03E-02
63	GO:0004791: thioredoxin-disulfide reductase activity	1.21E-02
64	GO:0005515: protein binding	1.49E-02
65	GO:0004806: triglyceride lipase activity	1.95E-02
66	GO:0043531: ADP binding	1.95E-02
67	GO:0030246: carbohydrate binding	1.99E-02
68	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.02E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.09E-02
70	GO:0005096: GTPase activator activity	2.17E-02
71	GO:0061630: ubiquitin protein ligase activity	2.32E-02
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.48E-02
73	GO:0003697: single-stranded DNA binding	2.48E-02
74	GO:0000149: SNARE binding	2.64E-02
75	GO:0005509: calcium ion binding	2.99E-02
76	GO:0015293: symporter activity	3.23E-02
77	GO:0003924: GTPase activity	3.26E-02
78	GO:0031625: ubiquitin protein ligase binding	3.95E-02
79	GO:0008234: cysteine-type peptidase activity	3.95E-02
80	GO:0022857: transmembrane transporter activity	4.52E-02
81	GO:0004842: ubiquitin-protein transferase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	9.83E-06
3	GO:0016021: integral component of membrane	3.29E-05
4	GO:0031304: intrinsic component of mitochondrial inner membrane	3.11E-04
5	GO:0030134: ER to Golgi transport vesicle	3.11E-04
6	GO:0005901: caveola	3.11E-04
7	GO:0005789: endoplasmic reticulum membrane	3.19E-04
8	GO:0005783: endoplasmic reticulum	3.64E-04
9	GO:0030658: transport vesicle membrane	7.34E-04
10	GO:0031597: cytosolic proteasome complex	1.81E-03
11	GO:0031595: nuclear proteasome complex	2.12E-03
12	GO:0008540: proteasome regulatory particle, base subcomplex	3.55E-03
13	GO:0017119: Golgi transport complex	3.95E-03
14	GO:0005795: Golgi stack	6.14E-03
15	GO:0005802: trans-Golgi network	6.17E-03
16	GO:0016020: membrane	1.03E-02
17	GO:0019898: extrinsic component of membrane	1.27E-02
18	GO:0009504: cell plate	1.27E-02
19	GO:0000139: Golgi membrane	1.39E-02
20	GO:0032580: Golgi cisterna membrane	1.53E-02
21	GO:0005778: peroxisomal membrane	1.60E-02
22	GO:0005777: peroxisome	1.63E-02
23	GO:0019005: SCF ubiquitin ligase complex	2.09E-02
24	GO:0005829: cytosol	2.79E-02
25	GO:0031201: SNARE complex	2.80E-02
26	GO:0031902: late endosome membrane	2.80E-02
27	GO:0031966: mitochondrial membrane	3.49E-02
28	GO:0000502: proteasome complex	3.67E-02
29	GO:0005834: heterotrimeric G-protein complex	4.32E-02
30	GO:0005887: integral component of plasma membrane	4.41E-02
31	GO:0012505: endomembrane system	4.62E-02