co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0016024: CDP-diacylglycerol biosynthetic process	1.65E-05
8	GO:0010027: thylakoid membrane organization	1.71E-05
9	GO:0015995: chlorophyll biosynthetic process	2.40E-05
10	GO:0010207: photosystem II assembly	2.52E-05
11	GO:0006655: phosphatidylglycerol biosynthetic process	6.73E-05
12	GO:1901259: chloroplast rRNA processing	9.36E-05
13	GO:0009772: photosynthetic electron transport in photosystem II	1.24E-04
14	GO:0043266: regulation of potassium ion transport	1.95E-04
15	GO:0010480: microsporocyte differentiation	1.95E-04
16	GO:0000481: maturation of 5S rRNA	1.95E-04
17	GO:0042759: long-chain fatty acid biosynthetic process	1.95E-04
18	GO:0042371: vitamin K biosynthetic process	1.95E-04
19	GO:0006106: fumarate metabolic process	1.95E-04
20	GO:2000021: regulation of ion homeostasis	1.95E-04
21	GO:0010450: inflorescence meristem growth	1.95E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	1.95E-04
23	GO:0042254: ribosome biogenesis	1.95E-04
24	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.95E-04
25	GO:0032544: plastid translation	1.98E-04
26	GO:0006412: translation	2.34E-04
27	GO:0010206: photosystem II repair	2.40E-04
28	GO:0015979: photosynthesis	3.66E-04
29	GO:0010541: acropetal auxin transport	4.38E-04
30	GO:0010025: wax biosynthetic process	7.14E-04
31	GO:0090391: granum assembly	7.14E-04
32	GO:0006518: peptide metabolic process	7.14E-04
33	GO:0045493: xylan catabolic process	7.14E-04
34	GO:0045165: cell fate commitment	7.14E-04
35	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	7.14E-04
36	GO:0010160: formation of animal organ boundary	7.14E-04
37	GO:1901332: negative regulation of lateral root development	1.02E-03
38	GO:0006168: adenine salvage	1.02E-03
39	GO:0006166: purine ribonucleoside salvage	1.02E-03
40	GO:0051513: regulation of monopolar cell growth	1.02E-03
41	GO:0010239: chloroplast mRNA processing	1.02E-03
42	GO:0080170: hydrogen peroxide transmembrane transport	1.02E-03
43	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.02E-03
44	GO:0010306: rhamnogalacturonan II biosynthetic process	1.02E-03
45	GO:0009306: protein secretion	1.22E-03
46	GO:0048443: stamen development	1.22E-03
47	GO:0010109: regulation of photosynthesis	1.35E-03
48	GO:0045727: positive regulation of translation	1.35E-03
49	GO:0030104: water homeostasis	1.35E-03
50	GO:0009735: response to cytokinin	1.36E-03
51	GO:0042631: cellular response to water deprivation	1.42E-03
52	GO:0042335: cuticle development	1.42E-03
53	GO:0010236: plastoquinone biosynthetic process	1.72E-03
54	GO:1902183: regulation of shoot apical meristem development	1.72E-03
55	GO:0016123: xanthophyll biosynthetic process	1.72E-03
56	GO:0044209: AMP salvage	1.72E-03
57	GO:0010158: abaxial cell fate specification	1.72E-03
58	GO:0000302: response to reactive oxygen species	1.89E-03
59	GO:0006751: glutathione catabolic process	2.12E-03
60	GO:0035435: phosphate ion transmembrane transport	2.12E-03
61	GO:0060918: auxin transport	2.12E-03
62	GO:0017148: negative regulation of translation	2.54E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	2.54E-03
64	GO:0042372: phylloquinone biosynthetic process	2.54E-03
65	GO:1900057: positive regulation of leaf senescence	3.00E-03
66	GO:0048437: floral organ development	3.00E-03
67	GO:0010196: nonphotochemical quenching	3.00E-03
68	GO:0009690: cytokinin metabolic process	3.47E-03
69	GO:0006605: protein targeting	3.47E-03
70	GO:0032508: DNA duplex unwinding	3.47E-03
71	GO:0006353: DNA-templated transcription, termination	3.47E-03
72	GO:0010093: specification of floral organ identity	3.97E-03
73	GO:0009631: cold acclimation	4.08E-03
74	GO:2000024: regulation of leaf development	4.49E-03
75	GO:0048589: developmental growth	4.49E-03
76	GO:0009245: lipid A biosynthetic process	4.49E-03
77	GO:0034599: cellular response to oxidative stress	4.67E-03
78	GO:0010205: photoinhibition	5.04E-03
79	GO:0006535: cysteine biosynthetic process from serine	5.61E-03
80	GO:1903507: negative regulation of nucleic acid-templated transcription	6.20E-03
81	GO:0048229: gametophyte development	6.20E-03
82	GO:0009773: photosynthetic electron transport in photosystem I	6.20E-03
83	GO:0009416: response to light stimulus	6.59E-03
84	GO:0010152: pollen maturation	6.81E-03
85	GO:0008361: regulation of cell size	6.81E-03
86	GO:0009664: plant-type cell wall organization	7.22E-03
87	GO:0006108: malate metabolic process	7.44E-03
88	GO:0009718: anthocyanin-containing compound biosynthetic process	7.44E-03
89	GO:0010075: regulation of meristem growth	7.44E-03
90	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.04E-03
91	GO:0010540: basipetal auxin transport	8.10E-03
92	GO:0009934: regulation of meristem structural organization	8.10E-03
93	GO:0010143: cutin biosynthetic process	8.10E-03
94	GO:0009933: meristem structural organization	8.10E-03
95	GO:0010030: positive regulation of seed germination	8.77E-03
96	GO:0006636: unsaturated fatty acid biosynthetic process	9.46E-03
97	GO:0019344: cysteine biosynthetic process	1.02E-02
98	GO:0000027: ribosomal large subunit assembly	1.02E-02
99	GO:0009944: polarity specification of adaxial/abaxial axis	1.02E-02
100	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.24E-02
101	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.32E-02
102	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.48E-02
103	GO:0034220: ion transmembrane transport	1.57E-02
104	GO:0048653: anther development	1.57E-02
105	GO:0042744: hydrogen peroxide catabolic process	1.58E-02
106	GO:0048868: pollen tube development	1.65E-02
107	GO:0010154: fruit development	1.65E-02
108	GO:0009958: positive gravitropism	1.65E-02
109	GO:0006633: fatty acid biosynthetic process	1.75E-02
110	GO:0071555: cell wall organization	1.91E-02
111	GO:0009734: auxin-activated signaling pathway	1.95E-02
112	GO:0009737: response to abscisic acid	2.02E-02
113	GO:0030163: protein catabolic process	2.11E-02
114	GO:0009639: response to red or far red light	2.20E-02
115	GO:0009828: plant-type cell wall loosening	2.20E-02
116	GO:0009567: double fertilization forming a zygote and endosperm	2.20E-02
117	GO:0009733: response to auxin	2.27E-02
118	GO:0009793: embryo development ending in seed dormancy	2.33E-02
119	GO:0051607: defense response to virus	2.40E-02
120	GO:0009627: systemic acquired resistance	2.70E-02
121	GO:0042128: nitrate assimilation	2.70E-02
122	GO:0010411: xyloglucan metabolic process	2.80E-02
123	GO:0009658: chloroplast organization	2.97E-02
124	GO:0010311: lateral root formation	3.12E-02
125	GO:0009860: pollen tube growth	3.20E-02
126	GO:0010218: response to far red light	3.23E-02
127	GO:0048527: lateral root development	3.34E-02
128	GO:0016051: carbohydrate biosynthetic process	3.57E-02
129	GO:0009637: response to blue light	3.57E-02
130	GO:0006099: tricarboxylic acid cycle	3.68E-02
131	GO:0030001: metal ion transport	3.92E-02
132	GO:0046777: protein autophosphorylation	3.93E-02
133	GO:0009926: auxin polar transport	4.27E-02
134	GO:0009640: photomorphogenesis	4.27E-02
135	GO:0006855: drug transmembrane transport	4.77E-02
136	GO:0006869: lipid transport	4.81E-02
137	GO:0031347: regulation of defense response	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0019843: rRNA binding	1.54E-10
7	GO:0005528: FK506 binding	1.02E-06
8	GO:0016851: magnesium chelatase activity	1.53E-05
9	GO:0003735: structural constituent of ribosome	3.05E-05
10	GO:0004130: cytochrome-c peroxidase activity	6.73E-05
11	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.73E-05
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.01E-04
13	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.95E-04
14	GO:0004333: fumarate hydratase activity	1.95E-04
15	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.95E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.95E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.95E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	1.95E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	4.38E-04
20	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.22E-04
21	GO:0003999: adenine phosphoribosyltransferase activity	1.02E-03
22	GO:0043023: ribosomal large subunit binding	1.02E-03
23	GO:0001872: (1->3)-beta-D-glucan binding	1.02E-03
24	GO:0009044: xylan 1,4-beta-xylosidase activity	1.35E-03
25	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.35E-03
26	GO:0046556: alpha-L-arabinofuranosidase activity	1.35E-03
27	GO:0004659: prenyltransferase activity	1.35E-03
28	GO:0010011: auxin binding	1.35E-03
29	GO:0052793: pectin acetylesterase activity	1.35E-03
30	GO:0004040: amidase activity	1.72E-03
31	GO:0052689: carboxylic ester hydrolase activity	1.77E-03
32	GO:0031177: phosphopantetheine binding	2.12E-03
33	GO:0016688: L-ascorbate peroxidase activity	2.12E-03
34	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.12E-03
35	GO:0000035: acyl binding	2.54E-03
36	GO:0004124: cysteine synthase activity	2.54E-03
37	GO:0008236: serine-type peptidase activity	3.36E-03
38	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.47E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.53E-03
40	GO:0015020: glucuronosyltransferase activity	5.61E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	5.99E-03
42	GO:0031072: heat shock protein binding	7.44E-03
43	GO:0009982: pseudouridine synthase activity	7.44E-03
44	GO:0015114: phosphate ion transmembrane transporter activity	7.44E-03
45	GO:0004565: beta-galactosidase activity	7.44E-03
46	GO:0010329: auxin efflux transmembrane transporter activity	7.44E-03
47	GO:0008266: poly(U) RNA binding	8.10E-03
48	GO:0016491: oxidoreductase activity	8.84E-03
49	GO:0005515: protein binding	9.54E-03
50	GO:0003714: transcription corepressor activity	1.02E-02
51	GO:0003729: mRNA binding	1.09E-02
52	GO:0016746: transferase activity, transferring acyl groups	1.14E-02
53	GO:0033612: receptor serine/threonine kinase binding	1.17E-02
54	GO:0004707: MAP kinase activity	1.17E-02
55	GO:0030570: pectate lyase activity	1.32E-02
56	GO:0003756: protein disulfide isomerase activity	1.40E-02
57	GO:0016829: lyase activity	1.50E-02
58	GO:0004252: serine-type endopeptidase activity	1.54E-02
59	GO:0050662: coenzyme binding	1.74E-02
60	GO:0010181: FMN binding	1.74E-02
61	GO:0004518: nuclease activity	2.01E-02
62	GO:0016791: phosphatase activity	2.20E-02
63	GO:0015250: water channel activity	2.50E-02
64	GO:0008375: acetylglucosaminyltransferase activity	2.70E-02
65	GO:0030247: polysaccharide binding	2.80E-02
66	GO:0005096: GTPase activator activity	3.12E-02
67	GO:0004222: metalloendopeptidase activity	3.23E-02
68	GO:0003723: RNA binding	3.33E-02
69	GO:0005524: ATP binding	3.41E-02
70	GO:0003746: translation elongation factor activity	3.57E-02
71	GO:0003993: acid phosphatase activity	3.68E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.80E-02
73	GO:0043621: protein self-association	4.52E-02
74	GO:0004871: signal transducer activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009507: chloroplast	4.45E-21
3	GO:0009534: chloroplast thylakoid	2.32E-17
4	GO:0009941: chloroplast envelope	4.97E-17
5	GO:0009570: chloroplast stroma	1.84E-16
6	GO:0009535: chloroplast thylakoid membrane	1.86E-11
7	GO:0009543: chloroplast thylakoid lumen	4.52E-09
8	GO:0009579: thylakoid	1.59E-07
9	GO:0005840: ribosome	2.34E-07
10	GO:0010007: magnesium chelatase complex	6.66E-06
11	GO:0031977: thylakoid lumen	6.53E-05
12	GO:0009515: granal stacked thylakoid	1.95E-04
13	GO:0045239: tricarboxylic acid cycle enzyme complex	1.95E-04
14	GO:0043674: columella	1.95E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.95E-04
16	GO:0030093: chloroplast photosystem I	4.38E-04
17	GO:0032040: small-subunit processome	4.48E-04
18	GO:0009509: chromoplast	7.14E-04
19	GO:0009531: secondary cell wall	1.02E-03
20	GO:0009295: nucleoid	2.42E-03
21	GO:0042807: central vacuole	3.00E-03
22	GO:0009533: chloroplast stromal thylakoid	3.00E-03
23	GO:0009538: photosystem I reaction center	3.47E-03
24	GO:0008180: COP9 signalosome	4.49E-03
25	GO:0009508: plastid chromosome	7.44E-03
26	GO:0031969: chloroplast membrane	7.69E-03
27	GO:0030095: chloroplast photosystem II	8.10E-03
28	GO:0009505: plant-type cell wall	8.12E-03
29	GO:0009706: chloroplast inner membrane	1.11E-02
30	GO:0031225: anchored component of membrane	1.29E-02
31	GO:0009522: photosystem I	1.74E-02
32	GO:0009523: photosystem II	1.83E-02
33	GO:0009705: plant-type vacuole membrane	1.92E-02
34	GO:0005618: cell wall	2.20E-02
35	GO:0009536: plastid	2.59E-02
36	GO:0019005: SCF ubiquitin ligase complex	3.02E-02
37	GO:0005886: plasma membrane	4.87E-02
38	GO:0048046: apoplast	4.90E-02