GO Enrichment Analysis of Co-expressed Genes with
AT3G49140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0018026: peptidyl-lysine monomethylation | 2.70E-07 |
| 4 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.23E-05 |
| 5 | GO:1901259: chloroplast rRNA processing | 1.76E-05 |
| 6 | GO:0010027: thylakoid membrane organization | 3.58E-05 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 4.64E-05 |
| 8 | GO:0010206: photosystem II repair | 5.07E-05 |
| 9 | GO:0043953: protein transport by the Tat complex | 6.91E-05 |
| 10 | GO:0043266: regulation of potassium ion transport | 6.91E-05 |
| 11 | GO:0065002: intracellular protein transmembrane transport | 6.91E-05 |
| 12 | GO:0006106: fumarate metabolic process | 6.91E-05 |
| 13 | GO:2000021: regulation of ion homeostasis | 6.91E-05 |
| 14 | GO:0034337: RNA folding | 6.91E-05 |
| 15 | GO:0015936: coenzyme A metabolic process | 6.91E-05 |
| 16 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.03E-04 |
| 17 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 2.81E-04 |
| 18 | GO:0006518: peptide metabolic process | 2.81E-04 |
| 19 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.06E-04 |
| 20 | GO:0010239: chloroplast mRNA processing | 4.06E-04 |
| 21 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 5.42E-04 |
| 22 | GO:0010109: regulation of photosynthesis | 5.42E-04 |
| 23 | GO:0009567: double fertilization forming a zygote and endosperm | 5.83E-04 |
| 24 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.87E-04 |
| 25 | GO:0042793: transcription from plastid promoter | 8.40E-04 |
| 26 | GO:0006751: glutathione catabolic process | 8.40E-04 |
| 27 | GO:0000470: maturation of LSU-rRNA | 8.40E-04 |
| 28 | GO:0016554: cytidine to uridine editing | 8.40E-04 |
| 29 | GO:0009658: chloroplast organization | 9.78E-04 |
| 30 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.17E-03 |
| 31 | GO:0006353: DNA-templated transcription, termination | 1.34E-03 |
| 32 | GO:0006605: protein targeting | 1.34E-03 |
| 33 | GO:0032544: plastid translation | 1.53E-03 |
| 34 | GO:0010205: photoinhibition | 1.93E-03 |
| 35 | GO:1900865: chloroplast RNA modification | 1.93E-03 |
| 36 | GO:0006535: cysteine biosynthetic process from serine | 2.14E-03 |
| 37 | GO:0009073: aromatic amino acid family biosynthetic process | 2.36E-03 |
| 38 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.36E-03 |
| 39 | GO:0006108: malate metabolic process | 2.82E-03 |
| 40 | GO:0009718: anthocyanin-containing compound biosynthetic process | 2.82E-03 |
| 41 | GO:0010207: photosystem II assembly | 3.06E-03 |
| 42 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.56E-03 |
| 43 | GO:0019344: cysteine biosynthetic process | 3.81E-03 |
| 44 | GO:0008299: isoprenoid biosynthetic process | 4.08E-03 |
| 45 | GO:0009416: response to light stimulus | 4.28E-03 |
| 46 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.63E-03 |
| 47 | GO:0071369: cellular response to ethylene stimulus | 4.91E-03 |
| 48 | GO:0009306: protein secretion | 5.20E-03 |
| 49 | GO:0042254: ribosome biogenesis | 7.27E-03 |
| 50 | GO:1901657: glycosyl compound metabolic process | 7.73E-03 |
| 51 | GO:0030163: protein catabolic process | 7.73E-03 |
| 52 | GO:0006412: translation | 7.93E-03 |
| 53 | GO:0016126: sterol biosynthetic process | 9.13E-03 |
| 54 | GO:0042128: nitrate assimilation | 9.87E-03 |
| 55 | GO:0015979: photosynthesis | 1.01E-02 |
| 56 | GO:0009817: defense response to fungus, incompatible interaction | 1.10E-02 |
| 57 | GO:0009631: cold acclimation | 1.22E-02 |
| 58 | GO:0016051: carbohydrate biosynthetic process | 1.30E-02 |
| 59 | GO:0006099: tricarboxylic acid cycle | 1.34E-02 |
| 60 | GO:0008152: metabolic process | 1.44E-02 |
| 61 | GO:0005975: carbohydrate metabolic process | 1.78E-02 |
| 62 | GO:0031347: regulation of defense response | 1.78E-02 |
| 63 | GO:0042538: hyperosmotic salinity response | 1.83E-02 |
| 64 | GO:0006364: rRNA processing | 1.92E-02 |
| 65 | GO:0009735: response to cytokinin | 2.13E-02 |
| 66 | GO:0009790: embryo development | 3.24E-02 |
| 67 | GO:0006633: fatty acid biosynthetic process | 3.41E-02 |
| 68 | GO:0009451: RNA modification | 3.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0019843: rRNA binding | 1.06E-06 |
| 4 | GO:0005528: FK506 binding | 4.14E-06 |
| 5 | GO:0016279: protein-lysine N-methyltransferase activity | 4.77E-06 |
| 6 | GO:0045485: omega-6 fatty acid desaturase activity | 6.91E-05 |
| 7 | GO:0004856: xylulokinase activity | 6.91E-05 |
| 8 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 6.91E-05 |
| 9 | GO:0004333: fumarate hydratase activity | 6.91E-05 |
| 10 | GO:0050139: nicotinate-N-glucosyltransferase activity | 6.91E-05 |
| 11 | GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity | 6.91E-05 |
| 12 | GO:0042282: hydroxymethylglutaryl-CoA reductase activity | 6.91E-05 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.42E-04 |
| 14 | GO:0003839: gamma-glutamylcyclotransferase activity | 1.66E-04 |
| 15 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.66E-04 |
| 16 | GO:0004751: ribose-5-phosphate isomerase activity | 2.81E-04 |
| 17 | GO:0016851: magnesium chelatase activity | 4.06E-04 |
| 18 | GO:0043023: ribosomal large subunit binding | 4.06E-04 |
| 19 | GO:0001872: (1->3)-beta-D-glucan binding | 4.06E-04 |
| 20 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 5.42E-04 |
| 21 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 6.87E-04 |
| 22 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 8.40E-04 |
| 23 | GO:0004124: cysteine synthase activity | 9.99E-04 |
| 24 | GO:0043022: ribosome binding | 1.34E-03 |
| 25 | GO:0008312: 7S RNA binding | 1.34E-03 |
| 26 | GO:0005525: GTP binding | 1.60E-03 |
| 27 | GO:0015020: glucuronosyltransferase activity | 2.14E-03 |
| 28 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.82E-03 |
| 29 | GO:0031072: heat shock protein binding | 2.82E-03 |
| 30 | GO:0009982: pseudouridine synthase activity | 2.82E-03 |
| 31 | GO:0003714: transcription corepressor activity | 3.81E-03 |
| 32 | GO:0003756: protein disulfide isomerase activity | 5.20E-03 |
| 33 | GO:0003735: structural constituent of ribosome | 6.22E-03 |
| 34 | GO:0016788: hydrolase activity, acting on ester bonds | 7.27E-03 |
| 35 | GO:0008375: acetylglucosaminyltransferase activity | 9.87E-03 |
| 36 | GO:0030247: polysaccharide binding | 1.02E-02 |
| 37 | GO:0102483: scopolin beta-glucosidase activity | 1.02E-02 |
| 38 | GO:0008236: serine-type peptidase activity | 1.06E-02 |
| 39 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.10E-02 |
| 40 | GO:0004222: metalloendopeptidase activity | 1.18E-02 |
| 41 | GO:0003746: translation elongation factor activity | 1.30E-02 |
| 42 | GO:0008422: beta-glucosidase activity | 1.38E-02 |
| 43 | GO:0050661: NADP binding | 1.43E-02 |
| 44 | GO:0016491: oxidoreductase activity | 1.49E-02 |
| 45 | GO:0043621: protein self-association | 1.65E-02 |
| 46 | GO:0004650: polygalacturonase activity | 2.32E-02 |
| 47 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.32E-02 |
| 48 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.32E-02 |
| 49 | GO:0051082: unfolded protein binding | 2.47E-02 |
| 50 | GO:0016746: transferase activity, transferring acyl groups | 2.52E-02 |
| 51 | GO:0016787: hydrolase activity | 2.74E-02 |
| 52 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.07E-02 |
| 53 | GO:0016829: lyase activity | 3.07E-02 |
| 54 | GO:0030170: pyridoxal phosphate binding | 3.12E-02 |
| 55 | GO:0004252: serine-type endopeptidase activity | 3.12E-02 |
| 56 | GO:0008017: microtubule binding | 3.77E-02 |
| 57 | GO:0008194: UDP-glycosyltransferase activity | 3.95E-02 |
| 58 | GO:0003743: translation initiation factor activity | 4.07E-02 |
| 59 | GO:0003723: RNA binding | 4.74E-02 |
| 60 | GO:0000287: magnesium ion binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.26E-24 |
| 3 | GO:0009570: chloroplast stroma | 1.09E-10 |
| 4 | GO:0009941: chloroplast envelope | 1.58E-10 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 8.60E-08 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.06E-06 |
| 7 | GO:0009534: chloroplast thylakoid | 1.30E-06 |
| 8 | GO:0045239: tricarboxylic acid cycle enzyme complex | 6.91E-05 |
| 9 | GO:0031361: integral component of thylakoid membrane | 6.91E-05 |
| 10 | GO:0005840: ribosome | 7.70E-05 |
| 11 | GO:0080085: signal recognition particle, chloroplast targeting | 1.66E-04 |
| 12 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.66E-04 |
| 13 | GO:0009509: chromoplast | 2.81E-04 |
| 14 | GO:0033281: TAT protein transport complex | 2.81E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 2.81E-04 |
| 16 | GO:0009536: plastid | 6.35E-04 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 1.17E-03 |
| 18 | GO:0031977: thylakoid lumen | 1.32E-03 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.53E-03 |
| 20 | GO:0055028: cortical microtubule | 2.14E-03 |
| 21 | GO:0032040: small-subunit processome | 2.58E-03 |
| 22 | GO:0009508: plastid chromosome | 2.82E-03 |
| 23 | GO:0009579: thylakoid | 5.37E-03 |
| 24 | GO:0009295: nucleoid | 8.42E-03 |
| 25 | GO:0031969: chloroplast membrane | 8.84E-03 |
| 26 | GO:0009706: chloroplast inner membrane | 2.47E-02 |
| 27 | GO:0009705: plant-type vacuole membrane | 3.65E-02 |
| 28 | GO:0005768: endosome | 4.23E-02 |
| 29 | GO:0046658: anchored component of plasma membrane | 4.45E-02 |