co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0048227: plasma membrane to endosome transport	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0001676: long-chain fatty acid metabolic process	7.44E-06
7	GO:0060548: negative regulation of cell death	1.40E-05
8	GO:0010150: leaf senescence	2.05E-05
9	GO:0006805: xenobiotic metabolic process	1.30E-04
10	GO:0015706: nitrate transport	2.53E-04
11	GO:0031648: protein destabilization	2.99E-04
12	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.99E-04
13	GO:0010155: regulation of proton transport	2.99E-04
14	GO:0051262: protein tetramerization	2.99E-04
15	GO:0030010: establishment of cell polarity	2.99E-04
16	GO:1902000: homogentisate catabolic process	2.99E-04
17	GO:0042742: defense response to bacterium	4.76E-04
18	GO:0071494: cellular response to UV-C	4.92E-04
19	GO:0010272: response to silver ion	4.92E-04
20	GO:0009072: aromatic amino acid family metabolic process	4.92E-04
21	GO:0048281: inflorescence morphogenesis	4.92E-04
22	GO:0008333: endosome to lysosome transport	4.92E-04
23	GO:1900140: regulation of seedling development	4.92E-04
24	GO:0080055: low-affinity nitrate transport	4.92E-04
25	GO:0010288: response to lead ion	4.92E-04
26	GO:0031348: negative regulation of defense response	6.01E-04
27	GO:0048194: Golgi vesicle budding	7.04E-04
28	GO:0072583: clathrin-dependent endocytosis	7.04E-04
29	GO:0045454: cell redox homeostasis	8.43E-04
30	GO:0006662: glycerol ether metabolic process	8.87E-04
31	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	9.34E-04
32	GO:0010188: response to microbial phytotoxin	9.34E-04
33	GO:0006623: protein targeting to vacuole	1.02E-03
34	GO:0010193: response to ozone	1.08E-03
35	GO:0046686: response to cadmium ion	1.15E-03
36	GO:0006468: protein phosphorylation	1.21E-03
37	GO:0010405: arabinogalactan protein metabolic process	1.45E-03
38	GO:0006751: glutathione catabolic process	1.45E-03
39	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.45E-03
40	GO:0009615: response to virus	1.55E-03
41	GO:0042128: nitrate assimilation	1.72E-03
42	GO:0015977: carbon fixation	1.73E-03
43	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.73E-03
44	GO:0007166: cell surface receptor signaling pathway	1.93E-03
45	GO:0043090: amino acid import	2.04E-03
46	GO:1900056: negative regulation of leaf senescence	2.04E-03
47	GO:0009407: toxin catabolic process	2.21E-03
48	GO:0000028: ribosomal small subunit assembly	2.36E-03
49	GO:0009819: drought recovery	2.36E-03
50	GO:0034599: cellular response to oxidative stress	2.65E-03
51	GO:0006002: fructose 6-phosphate metabolic process	2.69E-03
52	GO:0009880: embryonic pattern specification	2.69E-03
53	GO:0006367: transcription initiation from RNA polymerase II promoter	2.69E-03
54	GO:0006631: fatty acid metabolic process	3.00E-03
55	GO:0046685: response to arsenic-containing substance	3.04E-03
56	GO:0009821: alkaloid biosynthetic process	3.04E-03
57	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.41E-03
58	GO:0042761: very long-chain fatty acid biosynthetic process	3.41E-03
59	GO:0000103: sulfate assimilation	3.79E-03
60	GO:0006032: chitin catabolic process	3.79E-03
61	GO:0000272: polysaccharide catabolic process	4.18E-03
62	GO:0006486: protein glycosylation	4.38E-03
63	GO:0010102: lateral root morphogenesis	5.00E-03
64	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.00E-03
65	GO:0002237: response to molecule of bacterial origin	5.44E-03
66	GO:0007034: vacuolar transport	5.44E-03
67	GO:0070588: calcium ion transmembrane transport	5.88E-03
68	GO:0010053: root epidermal cell differentiation	5.88E-03
69	GO:0010167: response to nitrate	5.88E-03
70	GO:0009553: embryo sac development	6.03E-03
71	GO:2000377: regulation of reactive oxygen species metabolic process	6.81E-03
72	GO:0000027: ribosomal large subunit assembly	6.81E-03
73	GO:0030150: protein import into mitochondrial matrix	6.81E-03
74	GO:0010187: negative regulation of seed germination	6.81E-03
75	GO:0016998: cell wall macromolecule catabolic process	7.79E-03
76	GO:0061077: chaperone-mediated protein folding	7.79E-03
77	GO:0080092: regulation of pollen tube growth	8.30E-03
78	GO:0009625: response to insect	8.82E-03
79	GO:0010227: floral organ abscission	8.82E-03
80	GO:0006012: galactose metabolic process	8.82E-03
81	GO:0009790: embryo development	9.09E-03
82	GO:0010091: trichome branching	9.35E-03
83	GO:0009734: auxin-activated signaling pathway	9.39E-03
84	GO:0042147: retrograde transport, endosome to Golgi	9.90E-03
85	GO:0042631: cellular response to water deprivation	1.04E-02
86	GO:0015031: protein transport	1.15E-02
87	GO:0009646: response to absence of light	1.16E-02
88	GO:0010183: pollen tube guidance	1.22E-02
89	GO:0000302: response to reactive oxygen species	1.28E-02
90	GO:0007264: small GTPase mediated signal transduction	1.34E-02
91	GO:0031047: gene silencing by RNA	1.34E-02
92	GO:0006952: defense response	1.38E-02
93	GO:0030163: protein catabolic process	1.40E-02
94	GO:0006464: cellular protein modification process	1.46E-02
95	GO:0001666: response to hypoxia	1.66E-02
96	GO:0009627: systemic acquired resistance	1.79E-02
97	GO:0006974: cellular response to DNA damage stimulus	1.79E-02
98	GO:0009860: pollen tube growth	1.80E-02
99	GO:0009723: response to ethylene	1.93E-02
100	GO:0048366: leaf development	1.97E-02
101	GO:0008219: cell death	2.00E-02
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
103	GO:0010200: response to chitin	2.14E-02
104	GO:0006499: N-terminal protein myristoylation	2.15E-02
105	GO:0010043: response to zinc ion	2.22E-02
106	GO:0048527: lateral root development	2.22E-02
107	GO:0046777: protein autophosphorylation	2.22E-02
108	GO:0006865: amino acid transport	2.29E-02
109	GO:0009867: jasmonic acid mediated signaling pathway	2.37E-02
110	GO:0045087: innate immune response	2.37E-02
111	GO:0006099: tricarboxylic acid cycle	2.45E-02
112	GO:0000209: protein polyubiquitination	2.92E-02
113	GO:0009751: response to salicylic acid	3.02E-02
114	GO:0009636: response to toxic substance	3.08E-02
115	GO:0006979: response to oxidative stress	3.09E-02
116	GO:0031347: regulation of defense response	3.25E-02
117	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.25E-02
118	GO:0009846: pollen germination	3.34E-02
119	GO:0006364: rRNA processing	3.51E-02
120	GO:0009736: cytokinin-activated signaling pathway	3.51E-02
121	GO:0006857: oligopeptide transport	3.68E-02
122	GO:0006096: glycolytic process	3.95E-02
123	GO:0050832: defense response to fungus	4.04E-02
124	GO:0048367: shoot system development	4.04E-02
125	GO:0009620: response to fungus	4.23E-02
126	GO:0016569: covalent chromatin modification	4.32E-02
127	GO:0006396: RNA processing	4.60E-02
128	GO:0009742: brassinosteroid mediated signaling pathway	4.70E-02
129	GO:0009735: response to cytokinin	4.93E-02
130	GO:0000398: mRNA splicing, via spliceosome	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0047134: protein-disulfide reductase activity	4.18E-05
5	GO:0102391: decanoate--CoA ligase activity	4.86E-05
6	GO:0004791: thioredoxin-disulfide reductase activity	5.95E-05
7	GO:0004467: long-chain fatty acid-CoA ligase activity	6.54E-05
8	GO:0005524: ATP binding	6.78E-05
9	GO:0004714: transmembrane receptor protein tyrosine kinase activity	8.48E-05
10	GO:0032050: clathrin heavy chain binding	1.30E-04
11	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.30E-04
12	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.89E-04
13	GO:0032791: lead ion binding	2.99E-04
14	GO:0048531: beta-1,3-galactosyltransferase activity	2.99E-04
15	GO:0005528: FK506 binding	4.55E-04
16	GO:0052692: raffinose alpha-galactosidase activity	4.92E-04
17	GO:0080054: low-affinity nitrate transmembrane transporter activity	4.92E-04
18	GO:0005093: Rab GDP-dissociation inhibitor activity	4.92E-04
19	GO:0004557: alpha-galactosidase activity	4.92E-04
20	GO:0008964: phosphoenolpyruvate carboxylase activity	4.92E-04
21	GO:0003840: gamma-glutamyltransferase activity	4.92E-04
22	GO:0036374: glutathione hydrolase activity	4.92E-04
23	GO:0033612: receptor serine/threonine kinase binding	5.50E-04
24	GO:0031176: endo-1,4-beta-xylanase activity	7.04E-04
25	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	7.04E-04
26	GO:0015035: protein disulfide oxidoreductase activity	8.57E-04
27	GO:0000062: fatty-acyl-CoA binding	9.34E-04
28	GO:0070628: proteasome binding	9.34E-04
29	GO:0031386: protein tag	1.18E-03
30	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.23E-03
31	GO:0030976: thiamine pyrophosphate binding	1.45E-03
32	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.45E-03
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.49E-03
34	GO:0004012: phospholipid-translocating ATPase activity	1.73E-03
35	GO:0003978: UDP-glucose 4-epimerase activity	1.73E-03
36	GO:0004602: glutathione peroxidase activity	1.73E-03
37	GO:0003872: 6-phosphofructokinase activity	2.04E-03
38	GO:0030515: snoRNA binding	2.04E-03
39	GO:0043295: glutathione binding	2.04E-03
40	GO:0000166: nucleotide binding	2.74E-03
41	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.76E-03
42	GO:0004364: glutathione transferase activity	3.13E-03
43	GO:0016844: strictosidine synthase activity	3.41E-03
44	GO:0015112: nitrate transmembrane transporter activity	3.41E-03
45	GO:0016301: kinase activity	3.50E-03
46	GO:0015293: symporter activity	3.66E-03
47	GO:0004568: chitinase activity	3.79E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.79E-03
49	GO:0004713: protein tyrosine kinase activity	3.79E-03
50	GO:0001054: RNA polymerase I activity	4.18E-03
51	GO:0008794: arsenate reductase (glutaredoxin) activity	4.18E-03
52	GO:0008378: galactosyltransferase activity	4.58E-03
53	GO:0005388: calcium-transporting ATPase activity	5.00E-03
54	GO:0031624: ubiquitin conjugating enzyme binding	5.44E-03
55	GO:0004190: aspartic-type endopeptidase activity	5.88E-03
56	GO:0008061: chitin binding	5.88E-03
57	GO:0003712: transcription cofactor activity	5.88E-03
58	GO:0003954: NADH dehydrogenase activity	6.81E-03
59	GO:0008536: Ran GTPase binding	1.10E-02
60	GO:0005515: protein binding	1.18E-02
61	GO:0004672: protein kinase activity	1.43E-02
62	GO:0000287: magnesium ion binding	1.64E-02
63	GO:0043531: ADP binding	1.83E-02
64	GO:0004721: phosphoprotein phosphatase activity	1.86E-02
65	GO:0005096: GTPase activator activity	2.07E-02
66	GO:0005516: calmodulin binding	2.11E-02
67	GO:0050897: cobalt ion binding	2.22E-02
68	GO:0003697: single-stranded DNA binding	2.37E-02
69	GO:0004722: protein serine/threonine phosphatase activity	2.72E-02
70	GO:0005198: structural molecule activity	3.08E-02
71	GO:0004674: protein serine/threonine kinase activity	3.12E-02
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.51E-02
73	GO:0016298: lipase activity	3.60E-02
74	GO:0015171: amino acid transmembrane transporter activity	3.77E-02
75	GO:0016746: transferase activity, transferring acyl groups	4.60E-02
76	GO:0016887: ATPase activity	4.72E-02
77	GO:0004386: helicase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	1.46E-05
3	GO:0005829: cytosol	7.59E-05
4	GO:0009514: glyoxysome	1.07E-04
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	1.30E-04
6	GO:0031304: intrinsic component of mitochondrial inner membrane	2.99E-04
7	GO:0046861: glyoxysomal membrane	4.92E-04
8	GO:0048046: apoplast	5.76E-04
9	GO:0005945: 6-phosphofructokinase complex	1.18E-03
10	GO:0005771: multivesicular body	1.45E-03
11	GO:0030904: retromer complex	1.45E-03
12	GO:0005736: DNA-directed RNA polymerase I complex	3.04E-03
13	GO:0017119: Golgi transport complex	3.79E-03
14	GO:0030125: clathrin vesicle coat	3.79E-03
15	GO:0005789: endoplasmic reticulum membrane	4.17E-03
16	GO:0032040: small-subunit processome	4.58E-03
17	GO:0005839: proteasome core complex	7.79E-03
18	GO:0005783: endoplasmic reticulum	7.81E-03
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.35E-03
20	GO:0005794: Golgi apparatus	1.02E-02
21	GO:0016021: integral component of membrane	1.37E-02
22	GO:0005777: peroxisome	1.50E-02
23	GO:0005778: peroxisomal membrane	1.53E-02
24	GO:0000932: P-body	1.66E-02
25	GO:0030529: intracellular ribonucleoprotein complex	1.66E-02
26	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.83E-02
27	GO:0019005: SCF ubiquitin ligase complex	2.00E-02
28	GO:0000151: ubiquitin ligase complex	2.00E-02
29	GO:0005802: trans-Golgi network	2.29E-02
30	GO:0005819: spindle	2.52E-02
31	GO:0031902: late endosome membrane	2.68E-02
32	GO:0009506: plasmodesma	2.97E-02
33	GO:0005840: ribosome	3.24E-02
34	GO:0043231: intracellular membrane-bounded organelle	3.37E-02
35	GO:0005635: nuclear envelope	3.68E-02
36	GO:0005887: integral component of plasma membrane	4.14E-02
37	GO:0005834: heterotrimeric G-protein complex	4.14E-02
38	GO:0000139: Golgi membrane	4.44E-02