co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0015979: photosynthesis	8.38E-07
3	GO:0090391: granum assembly	9.92E-07
4	GO:0006412: translation	3.34E-06
5	GO:0042254: ribosome biogenesis	7.27E-06
6	GO:0009735: response to cytokinin	7.52E-06
7	GO:0009772: photosynthetic electron transport in photosystem II	2.32E-05
8	GO:0015995: chlorophyll biosynthetic process	4.41E-05
9	GO:0042759: long-chain fatty acid biosynthetic process	6.74E-05
10	GO:0042371: vitamin K biosynthetic process	6.74E-05
11	GO:0006729: tetrahydrobiopterin biosynthetic process	1.62E-04
12	GO:0006568: tryptophan metabolic process	1.62E-04
13	GO:0010024: phytochromobilin biosynthetic process	1.62E-04
14	GO:0006788: heme oxidation	2.75E-04
15	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.77E-04
16	GO:0071484: cellular response to light intensity	3.98E-04
17	GO:0009102: biotin biosynthetic process	3.98E-04
18	GO:0051085: chaperone mediated protein folding requiring cofactor	3.98E-04
19	GO:0006986: response to unfolded protein	3.98E-04
20	GO:0009828: plant-type cell wall loosening	5.67E-04
21	GO:0010027: thylakoid membrane organization	6.71E-04
22	GO:0010236: plastoquinone biosynthetic process	6.73E-04
23	GO:0042372: phylloquinone biosynthetic process	9.79E-04
24	GO:0010196: nonphotochemical quenching	1.14E-03
25	GO:0030001: metal ion transport	1.23E-03
26	GO:0048564: photosystem I assembly	1.32E-03
27	GO:0032544: plastid translation	1.50E-03
28	GO:0010206: photosystem II repair	1.69E-03
29	GO:0009664: plant-type cell wall organization	1.72E-03
30	GO:0006949: syncytium formation	2.10E-03
31	GO:0006535: cysteine biosynthetic process from serine	2.10E-03
32	GO:0048829: root cap development	2.10E-03
33	GO:0009773: photosynthetic electron transport in photosystem I	2.31E-03
34	GO:0018119: peptidyl-cysteine S-nitrosylation	2.31E-03
35	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-03
36	GO:0010588: cotyledon vascular tissue pattern formation	2.76E-03
37	GO:0010143: cutin biosynthetic process	2.99E-03
38	GO:0010207: photosystem II assembly	2.99E-03
39	GO:0010025: wax biosynthetic process	3.48E-03
40	GO:0019344: cysteine biosynthetic process	3.73E-03
41	GO:0003333: amino acid transmembrane transport	4.26E-03
42	GO:0045490: pectin catabolic process	4.48E-03
43	GO:0030245: cellulose catabolic process	4.53E-03
44	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.38E-03
45	GO:0080022: primary root development	5.68E-03
46	GO:0015986: ATP synthesis coupled proton transport	6.28E-03
47	GO:0009826: unidimensional cell growth	6.65E-03
48	GO:0009793: embryo development ending in seed dormancy	7.45E-03
49	GO:0009567: double fertilization forming a zygote and endosperm	7.90E-03
50	GO:0007568: aging	1.19E-02
51	GO:0006865: amino acid transport	1.23E-02
52	GO:0010114: response to red light	1.52E-02
53	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
54	GO:0042545: cell wall modification	2.37E-02
55	GO:0009624: response to nematode	2.42E-02
56	GO:0006457: protein folding	2.92E-02
57	GO:0009790: embryo development	3.17E-02
58	GO:0006633: fatty acid biosynthetic process	3.33E-02
59	GO:0007623: circadian rhythm	3.57E-02
60	GO:0009451: RNA modification	3.63E-02
61	GO:0009739: response to gibberellin	3.86E-02
62	GO:0042742: defense response to bacterium	4.55E-02
63	GO:0009658: chloroplast organization	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0019843: rRNA binding	5.75E-10
6	GO:0003735: structural constituent of ribosome	4.23E-08
7	GO:0016851: magnesium chelatase activity	2.38E-06
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	6.74E-05
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.74E-05
10	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	6.74E-05
11	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.62E-04
12	GO:0005528: FK506 binding	1.88E-04
13	GO:0051087: chaperone binding	2.09E-04
14	GO:0004659: prenyltransferase activity	5.32E-04
15	GO:0016836: hydro-lyase activity	5.32E-04
16	GO:0004392: heme oxygenase (decyclizing) activity	5.32E-04
17	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.23E-04
18	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.23E-04
19	GO:0004124: cysteine synthase activity	9.79E-04
20	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.32E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.60E-03
22	GO:0008266: poly(U) RNA binding	2.99E-03
23	GO:0030570: pectate lyase activity	4.81E-03
24	GO:0008810: cellulase activity	4.81E-03
25	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.98E-03
26	GO:0005507: copper ion binding	6.44E-03
27	GO:0016791: phosphatase activity	7.90E-03
28	GO:0005509: calcium ion binding	9.09E-03
29	GO:0003746: translation elongation factor activity	1.27E-02
30	GO:0051539: 4 iron, 4 sulfur cluster binding	1.39E-02
31	GO:0004185: serine-type carboxypeptidase activity	1.52E-02
32	GO:0051537: 2 iron, 2 sulfur cluster binding	1.61E-02
33	GO:0015293: symporter activity	1.65E-02
34	GO:0016887: ATPase activity	1.97E-02
35	GO:0015171: amino acid transmembrane transporter activity	2.02E-02
36	GO:0045330: aspartyl esterase activity	2.02E-02
37	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.17E-02
38	GO:0030599: pectinesterase activity	2.31E-02
39	GO:0051082: unfolded protein binding	2.42E-02
40	GO:0016746: transferase activity, transferring acyl groups	2.47E-02
41	GO:0016740: transferase activity	2.75E-02
42	GO:0016829: lyase activity	3.00E-02
43	GO:0030170: pyridoxal phosphate binding	3.05E-02
44	GO:0046910: pectinesterase inhibitor activity	3.39E-02
45	GO:0003723: RNA binding	4.53E-02
46	GO:0008168: methyltransferase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009570: chloroplast stroma	2.06E-26
3	GO:0009507: chloroplast	4.68E-21
4	GO:0009579: thylakoid	1.19E-16
5	GO:0009941: chloroplast envelope	1.73E-15
6	GO:0009534: chloroplast thylakoid	4.67E-15
7	GO:0009535: chloroplast thylakoid membrane	3.32E-10
8	GO:0009543: chloroplast thylakoid lumen	5.75E-10
9	GO:0005840: ribosome	3.62E-08
10	GO:0031977: thylakoid lumen	7.21E-08
11	GO:0010007: magnesium chelatase complex	9.92E-07
12	GO:0030095: chloroplast photosystem II	2.16E-06
13	GO:0009654: photosystem II oxygen evolving complex	4.68E-06
14	GO:0019898: extrinsic component of membrane	1.67E-05
15	GO:0009547: plastid ribosome	6.74E-05
16	GO:0009515: granal stacked thylakoid	6.74E-05
17	GO:0016020: membrane	1.33E-04
18	GO:0009509: chromoplast	2.75E-04
19	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.23E-04
20	GO:0005618: cell wall	1.24E-03
21	GO:0042644: chloroplast nucleoid	1.69E-03
22	GO:0000311: plastid large ribosomal subunit	2.53E-03
23	GO:0009508: plastid chromosome	2.76E-03
24	GO:0000312: plastid small ribosomal subunit	2.99E-03
25	GO:0005759: mitochondrial matrix	4.08E-03
26	GO:0015935: small ribosomal subunit	4.26E-03
27	GO:0005802: trans-Golgi network	7.48E-03
28	GO:0010319: stromule	8.24E-03
29	GO:0009295: nucleoid	8.24E-03
30	GO:0005768: endosome	8.80E-03
31	GO:0009706: chloroplast inner membrane	2.42E-02
32	GO:0010287: plastoglobule	2.73E-02
33	GO:0046658: anchored component of plasma membrane	4.35E-02
34	GO:0022627: cytosolic small ribosomal subunit	4.35E-02