Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0051513: regulation of monopolar cell growth1.75E-06
5GO:0009734: auxin-activated signaling pathway3.77E-05
6GO:0000476: maturation of 4.5S rRNA5.64E-05
7GO:0000967: rRNA 5'-end processing5.64E-05
8GO:0043266: regulation of potassium ion transport5.64E-05
9GO:0010480: microsporocyte differentiation5.64E-05
10GO:2000021: regulation of ion homeostasis5.64E-05
11GO:0010450: inflorescence meristem growth5.64E-05
12GO:0016024: CDP-diacylglycerol biosynthetic process7.64E-05
13GO:0035304: regulation of protein dephosphorylation1.37E-04
14GO:0010541: acropetal auxin transport1.37E-04
15GO:0034470: ncRNA processing1.37E-04
16GO:0045493: xylan catabolic process2.34E-04
17GO:0045165: cell fate commitment2.34E-04
18GO:0010160: formation of animal organ boundary2.34E-04
19GO:0048443: stamen development2.38E-04
20GO:0034220: ion transmembrane transport2.80E-04
21GO:0009733: response to auxin3.32E-04
22GO:0080170: hydrogen peroxide transmembrane transport3.41E-04
23GO:0043481: anthocyanin accumulation in tissues in response to UV light3.41E-04
24GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.41E-04
25GO:0030104: water homeostasis4.56E-04
26GO:1902183: regulation of shoot apical meristem development5.78E-04
27GO:0010158: abaxial cell fate specification5.78E-04
28GO:0009913: epidermal cell differentiation7.07E-04
29GO:0006655: phosphatidylglycerol biosynthetic process7.07E-04
30GO:0060918: auxin transport7.07E-04
31GO:0006751: glutathione catabolic process7.07E-04
32GO:0042549: photosystem II stabilization7.07E-04
33GO:1900057: positive regulation of leaf senescence9.85E-04
34GO:0048437: floral organ development9.85E-04
35GO:0050829: defense response to Gram-negative bacterium9.85E-04
36GO:0009926: auxin polar transport1.10E-03
37GO:0046620: regulation of organ growth1.13E-03
38GO:0010093: specification of floral organ identity1.29E-03
39GO:0009664: plant-type cell wall organization1.37E-03
40GO:0010206: photosystem II repair1.45E-03
41GO:2000024: regulation of leaf development1.45E-03
42GO:0048589: developmental growth1.45E-03
43GO:0009245: lipid A biosynthetic process1.45E-03
44GO:0010205: photoinhibition1.62E-03
45GO:0055062: phosphate ion homeostasis1.79E-03
46GO:0019684: photosynthesis, light reaction1.97E-03
47GO:1903507: negative regulation of nucleic acid-templated transcription1.97E-03
48GO:0048229: gametophyte development1.97E-03
49GO:0010152: pollen maturation2.16E-03
50GO:0008361: regulation of cell size2.16E-03
51GO:0010075: regulation of meristem growth2.36E-03
52GO:0010588: cotyledon vascular tissue pattern formation2.36E-03
53GO:0010207: photosystem II assembly2.56E-03
54GO:0010540: basipetal auxin transport2.56E-03
55GO:0009934: regulation of meristem structural organization2.56E-03
56GO:0010143: cutin biosynthetic process2.56E-03
57GO:0009933: meristem structural organization2.56E-03
58GO:0010030: positive regulation of seed germination2.76E-03
59GO:0042744: hydrogen peroxide catabolic process2.93E-03
60GO:0006833: water transport2.97E-03
61GO:0009944: polarity specification of adaxial/abaxial axis3.18E-03
62GO:0007017: microtubule-based process3.40E-03
63GO:0048511: rhythmic process3.63E-03
64GO:2000022: regulation of jasmonic acid mediated signaling pathway3.86E-03
65GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.10E-03
66GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.58E-03
67GO:0080022: primary root development4.83E-03
68GO:0010087: phloem or xylem histogenesis4.83E-03
69GO:0048653: anther development4.83E-03
70GO:0042631: cellular response to water deprivation4.83E-03
71GO:0042335: cuticle development4.83E-03
72GO:0009958: positive gravitropism5.09E-03
73GO:0010154: fruit development5.09E-03
74GO:0010305: leaf vascular tissue pattern formation5.09E-03
75GO:0042752: regulation of circadian rhythm5.35E-03
76GO:0048825: cotyledon development5.61E-03
77GO:0000302: response to reactive oxygen species5.88E-03
78GO:0010193: response to ozone5.88E-03
79GO:0009639: response to red or far red light6.71E-03
80GO:0009828: plant-type cell wall loosening6.71E-03
81GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.01E-03
82GO:0009627: systemic acquired resistance8.19E-03
83GO:0010411: xyloglucan metabolic process8.50E-03
84GO:0015995: chlorophyll biosynthetic process8.50E-03
85GO:0010218: response to far red light9.78E-03
86GO:0048527: lateral root development1.01E-02
87GO:0016051: carbohydrate biosynthetic process1.08E-02
88GO:0009637: response to blue light1.08E-02
89GO:0008152: metabolic process1.10E-02
90GO:0034599: cellular response to oxidative stress1.11E-02
91GO:0009640: photomorphogenesis1.29E-02
92GO:0031347: regulation of defense response1.48E-02
93GO:0042538: hyperosmotic salinity response1.51E-02
94GO:0010224: response to UV-B1.63E-02
95GO:0009909: regulation of flower development1.71E-02
96GO:0007275: multicellular organism development1.76E-02
97GO:0009416: response to light stimulus1.78E-02
98GO:0009611: response to wounding1.82E-02
99GO:0048367: shoot system development1.83E-02
100GO:0042545: cell wall modification2.00E-02
101GO:0055085: transmembrane transport2.26E-02
102GO:0009845: seed germination2.54E-02
103GO:0006633: fatty acid biosynthetic process2.82E-02
104GO:0040008: regulation of growth2.92E-02
105GO:0007623: circadian rhythm3.02E-02
106GO:0045490: pectin catabolic process3.02E-02
107GO:0071555: cell wall organization3.61E-02
108GO:0009826: unidimensional cell growth4.01E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0010242: oxygen evolving activity5.64E-05
6GO:0003839: gamma-glutamylcyclotransferase activity1.37E-04
7GO:0005528: FK506 binding1.46E-04
8GO:0005515: protein binding3.20E-04
9GO:0009044: xylan 1,4-beta-xylosidase activity4.56E-04
10GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.56E-04
11GO:0046556: alpha-L-arabinofuranosidase activity4.56E-04
12GO:0010011: auxin binding4.56E-04
13GO:0015250: water channel activity5.36E-04
14GO:0031177: phosphopantetheine binding7.07E-04
15GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.07E-04
16GO:0004130: cytochrome-c peroxidase activity7.07E-04
17GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.07E-04
18GO:0000035: acyl binding8.44E-04
19GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.13E-03
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-03
21GO:0015020: glucuronosyltransferase activity1.79E-03
22GO:0016746: transferase activity, transferring acyl groups2.13E-03
23GO:0031072: heat shock protein binding2.36E-03
24GO:0010329: auxin efflux transmembrane transporter activity2.36E-03
25GO:0008266: poly(U) RNA binding2.56E-03
26GO:0003714: transcription corepressor activity3.18E-03
27GO:0033612: receptor serine/threonine kinase binding3.63E-03
28GO:0003756: protein disulfide isomerase activity4.34E-03
29GO:0004601: peroxidase activity5.47E-03
30GO:0016791: phosphatase activity6.71E-03
31GO:0005200: structural constituent of cytoskeleton7.00E-03
32GO:0008375: acetylglucosaminyltransferase activity8.19E-03
33GO:0005096: GTPase activator activity9.45E-03
34GO:0003746: translation elongation factor activity1.08E-02
35GO:0003993: acid phosphatase activity1.11E-02
36GO:0004712: protein serine/threonine/tyrosine kinase activity1.15E-02
37GO:0008289: lipid binding1.40E-02
38GO:0003777: microtubule motor activity1.71E-02
39GO:0045330: aspartyl esterase activity1.71E-02
40GO:0004650: polygalacturonase activity1.92E-02
41GO:0030599: pectinesterase activity1.96E-02
42GO:0051082: unfolded protein binding2.04E-02
43GO:0016829: lyase activity2.54E-02
44GO:0046910: pectinesterase inhibitor activity2.87E-02
45GO:0005525: GTP binding2.93E-02
46GO:0005509: calcium ion binding3.33E-02
47GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.58E-02
48GO:0042802: identical protein binding3.58E-02
49GO:0016788: hydrolase activity, acting on ester bonds4.17E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0009543: chloroplast thylakoid lumen1.22E-08
3GO:0009534: chloroplast thylakoid2.45E-08
4GO:0031977: thylakoid lumen2.05E-06
5GO:0009535: chloroplast thylakoid membrane3.64E-05
6GO:0043674: columella5.64E-05
7GO:0030095: chloroplast photosystem II1.02E-04
8GO:0009507: chloroplast1.64E-04
9GO:0009531: secondary cell wall3.41E-04
10GO:0009570: chloroplast stroma5.65E-04
11GO:0009579: thylakoid6.63E-04
12GO:0042807: central vacuole9.85E-04
13GO:0009941: chloroplast envelope1.08E-03
14GO:0009538: photosystem I reaction center1.13E-03
15GO:0008180: COP9 signalosome1.45E-03
16GO:0045298: tubulin complex1.45E-03
17GO:0009505: plant-type cell wall2.05E-03
18GO:0009654: photosystem II oxygen evolving complex3.40E-03
19GO:0009705: plant-type vacuole membrane3.55E-03
20GO:0019898: extrinsic component of membrane5.61E-03
21GO:0071944: cell periphery6.43E-03
22GO:0031969: chloroplast membrane6.77E-03
23GO:0005886: plasma membrane8.94E-03
24GO:0019005: SCF ubiquitin ligase complex9.13E-03
25GO:0005618: cell wall1.17E-02
26GO:0005887: integral component of plasma membrane1.36E-02
27GO:0000502: proteasome complex1.59E-02
28GO:0010287: plastoglobule2.31E-02
29GO:0005874: microtubule4.68E-02
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Gene type



Gene DE type