Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0015882: L-ascorbic acid transport0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.40E-08
10GO:0009773: photosynthetic electron transport in photosystem I3.71E-07
11GO:0010275: NAD(P)H dehydrogenase complex assembly2.75E-06
12GO:0071482: cellular response to light stimulus6.80E-06
13GO:0006810: transport3.29E-05
14GO:0006021: inositol biosynthetic process4.12E-05
15GO:0019253: reductive pentose-phosphate cycle4.16E-05
16GO:0009658: chloroplast organization4.95E-05
17GO:0048564: photosystem I assembly2.22E-04
18GO:0009791: post-embryonic development2.38E-04
19GO:0031998: regulation of fatty acid beta-oxidation2.43E-04
20GO:0010028: xanthophyll cycle2.43E-04
21GO:0009443: pyridoxal 5'-phosphate salvage2.43E-04
22GO:0051775: response to redox state2.43E-04
23GO:0006659: phosphatidylserine biosynthetic process2.43E-04
24GO:0033481: galacturonate biosynthetic process2.43E-04
25GO:0080093: regulation of photorespiration2.43E-04
26GO:0009657: plastid organization2.74E-04
27GO:0000373: Group II intron splicing3.32E-04
28GO:0055114: oxidation-reduction process3.36E-04
29GO:0006352: DNA-templated transcription, initiation5.33E-04
30GO:0018119: peptidyl-cysteine S-nitrosylation5.33E-04
31GO:0030388: fructose 1,6-bisphosphate metabolic process5.39E-04
32GO:1902326: positive regulation of chlorophyll biosynthetic process5.39E-04
33GO:0097054: L-glutamate biosynthetic process5.39E-04
34GO:1904143: positive regulation of carotenoid biosynthetic process5.39E-04
35GO:0046686: response to cadmium ion6.66E-04
36GO:0006094: gluconeogenesis6.91E-04
37GO:0009767: photosynthetic electron transport chain6.91E-04
38GO:0005986: sucrose biosynthetic process6.91E-04
39GO:0006108: malate metabolic process6.91E-04
40GO:0009416: response to light stimulus7.04E-04
41GO:0009853: photorespiration8.06E-04
42GO:0006000: fructose metabolic process8.75E-04
43GO:0006518: peptide metabolic process8.75E-04
44GO:0006696: ergosterol biosynthetic process8.75E-04
45GO:0009744: response to sucrose1.10E-03
46GO:0006020: inositol metabolic process1.25E-03
47GO:0051513: regulation of monopolar cell growth1.25E-03
48GO:0006107: oxaloacetate metabolic process1.25E-03
49GO:0006537: glutamate biosynthetic process1.25E-03
50GO:0033014: tetrapyrrole biosynthetic process1.25E-03
51GO:0016556: mRNA modification1.25E-03
52GO:2001141: regulation of RNA biosynthetic process1.25E-03
53GO:0032877: positive regulation of DNA endoreduplication1.25E-03
54GO:0080092: regulation of pollen tube growth1.40E-03
55GO:0019676: ammonia assimilation cycle1.67E-03
56GO:0045727: positive regulation of translation1.67E-03
57GO:0031122: cytoplasmic microtubule organization1.67E-03
58GO:0006546: glycine catabolic process1.67E-03
59GO:0071483: cellular response to blue light1.67E-03
60GO:0006734: NADH metabolic process1.67E-03
61GO:0009902: chloroplast relocation1.67E-03
62GO:0010021: amylopectin biosynthetic process1.67E-03
63GO:0042631: cellular response to water deprivation1.94E-03
64GO:0006096: glycolytic process1.98E-03
65GO:0006097: glyoxylate cycle2.13E-03
66GO:0006461: protein complex assembly2.13E-03
67GO:0009247: glycolipid biosynthetic process2.13E-03
68GO:0080110: sporopollenin biosynthetic process2.13E-03
69GO:0043097: pyrimidine nucleoside salvage2.13E-03
70GO:0009735: response to cytokinin2.38E-03
71GO:0019252: starch biosynthetic process2.40E-03
72GO:0008654: phospholipid biosynthetic process2.40E-03
73GO:0010304: PSII associated light-harvesting complex II catabolic process2.62E-03
74GO:0042549: photosystem II stabilization2.62E-03
75GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.62E-03
76GO:0010190: cytochrome b6f complex assembly2.62E-03
77GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.62E-03
78GO:0006206: pyrimidine nucleobase metabolic process2.62E-03
79GO:0046855: inositol phosphate dephosphorylation2.62E-03
80GO:0042026: protein refolding3.15E-03
81GO:0006458: 'de novo' protein folding3.15E-03
82GO:1901259: chloroplast rRNA processing3.15E-03
83GO:0009854: oxidative photosynthetic carbon pathway3.15E-03
84GO:0009645: response to low light intensity stimulus3.72E-03
85GO:0050829: defense response to Gram-negative bacterium3.72E-03
86GO:0016559: peroxisome fission4.31E-03
87GO:0005978: glycogen biosynthetic process4.31E-03
88GO:0019375: galactolipid biosynthetic process4.31E-03
89GO:0009704: de-etiolation4.31E-03
90GO:0018298: protein-chromophore linkage4.83E-03
91GO:0017004: cytochrome complex assembly4.93E-03
92GO:0006002: fructose 6-phosphate metabolic process4.93E-03
93GO:0032544: plastid translation4.93E-03
94GO:0009409: response to cold5.15E-03
95GO:0000902: cell morphogenesis5.59E-03
96GO:0098656: anion transmembrane transport5.59E-03
97GO:0009821: alkaloid biosynthetic process5.59E-03
98GO:0006098: pentose-phosphate shunt5.59E-03
99GO:0010206: photosystem II repair5.59E-03
100GO:0006783: heme biosynthetic process5.59E-03
101GO:0005982: starch metabolic process6.27E-03
102GO:0010205: photoinhibition6.27E-03
103GO:0006779: porphyrin-containing compound biosynthetic process6.27E-03
104GO:1900865: chloroplast RNA modification6.27E-03
105GO:0006099: tricarboxylic acid cycle6.41E-03
106GO:0045036: protein targeting to chloroplast6.99E-03
107GO:0019538: protein metabolic process6.99E-03
108GO:0006535: cysteine biosynthetic process from serine6.99E-03
109GO:0000038: very long-chain fatty acid metabolic process7.73E-03
110GO:0019684: photosynthesis, light reaction7.73E-03
111GO:0006415: translational termination7.73E-03
112GO:0000272: polysaccharide catabolic process7.73E-03
113GO:0006790: sulfur compound metabolic process8.49E-03
114GO:0009725: response to hormone9.29E-03
115GO:0006006: glucose metabolic process9.29E-03
116GO:0042742: defense response to bacterium9.55E-03
117GO:0010143: cutin biosynthetic process1.01E-02
118GO:0010207: photosystem II assembly1.01E-02
119GO:0046854: phosphatidylinositol phosphorylation1.10E-02
120GO:0009969: xyloglucan biosynthetic process1.10E-02
121GO:0009225: nucleotide-sugar metabolic process1.10E-02
122GO:0007031: peroxisome organization1.10E-02
123GO:0042343: indole glucosinolate metabolic process1.10E-02
124GO:0090351: seedling development1.10E-02
125GO:0019762: glucosinolate catabolic process1.18E-02
126GO:0010025: wax biosynthetic process1.18E-02
127GO:0019344: cysteine biosynthetic process1.27E-02
128GO:0015979: photosynthesis1.37E-02
129GO:0016575: histone deacetylation1.37E-02
130GO:0009768: photosynthesis, light harvesting in photosystem I1.37E-02
131GO:0098542: defense response to other organism1.46E-02
132GO:0061077: chaperone-mediated protein folding1.46E-02
133GO:0016226: iron-sulfur cluster assembly1.56E-02
134GO:0006457: protein folding1.58E-02
135GO:0010584: pollen exine formation1.76E-02
136GO:0032259: methylation1.79E-02
137GO:0016117: carotenoid biosynthetic process1.86E-02
138GO:0005975: carbohydrate metabolic process1.96E-02
139GO:0042335: cuticle development1.97E-02
140GO:0009058: biosynthetic process2.01E-02
141GO:0009753: response to jasmonic acid2.07E-02
142GO:0009741: response to brassinosteroid2.07E-02
143GO:0006520: cellular amino acid metabolic process2.07E-02
144GO:0006814: sodium ion transport2.18E-02
145GO:0009646: response to absence of light2.18E-02
146GO:0080156: mitochondrial mRNA modification2.41E-02
147GO:0032502: developmental process2.52E-02
148GO:0019761: glucosinolate biosynthetic process2.52E-02
149GO:0030163: protein catabolic process2.64E-02
150GO:0007623: circadian rhythm2.64E-02
151GO:0010090: trichome morphogenesis2.64E-02
152GO:0071805: potassium ion transmembrane transport2.88E-02
153GO:0001666: response to hypoxia3.13E-02
154GO:0010027: thylakoid membrane organization3.13E-02
155GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.26E-02
156GO:0009816: defense response to bacterium, incompatible interaction3.26E-02
157GO:0009817: defense response to fungus, incompatible interaction3.78E-02
158GO:0009611: response to wounding3.97E-02
159GO:0009407: toxin catabolic process4.05E-02
160GO:0016051: carbohydrate biosynthetic process4.48E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0050281: serine-glyoxylate transaminase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0008974: phosphoribulokinase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0046905: phytoene synthase activity0.00E+00
15GO:0008465: glycerate dehydrogenase activity0.00E+00
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.46E-07
17GO:0004033: aldo-keto reductase (NADP) activity4.69E-06
18GO:0048038: quinone binding1.51E-05
19GO:0001053: plastid sigma factor activity4.12E-05
20GO:0016987: sigma factor activity4.12E-05
21GO:0004222: metalloendopeptidase activity6.54E-05
22GO:0016615: malate dehydrogenase activity9.62E-05
23GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.32E-04
24GO:0030060: L-malate dehydrogenase activity1.32E-04
25GO:0008568: microtubule-severing ATPase activity2.43E-04
26GO:0003867: 4-aminobutyrate transaminase activity2.43E-04
27GO:0004325: ferrochelatase activity2.43E-04
28GO:0051996: squalene synthase activity2.43E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.43E-04
30GO:0008746: NAD(P)+ transhydrogenase activity2.43E-04
31GO:0016041: glutamate synthase (ferredoxin) activity2.43E-04
32GO:0030941: chloroplast targeting sequence binding2.43E-04
33GO:0005089: Rho guanyl-nucleotide exchange factor activity5.33E-04
34GO:0010297: heteropolysaccharide binding5.39E-04
35GO:0004047: aminomethyltransferase activity5.39E-04
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.39E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity5.39E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.39E-04
39GO:0003844: 1,4-alpha-glucan branching enzyme activity5.39E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity5.39E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity5.39E-04
42GO:0004512: inositol-3-phosphate synthase activity5.39E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.39E-04
44GO:0008967: phosphoglycolate phosphatase activity5.39E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.39E-04
46GO:0050017: L-3-cyanoalanine synthase activity5.39E-04
47GO:0031072: heat shock protein binding6.91E-04
48GO:0070402: NADPH binding8.75E-04
49GO:0070330: aromatase activity8.75E-04
50GO:0043169: cation binding8.75E-04
51GO:0003913: DNA photolyase activity8.75E-04
52GO:0032947: protein complex scaffold8.75E-04
53GO:0004148: dihydrolipoyl dehydrogenase activity8.75E-04
54GO:0050307: sucrose-phosphate phosphatase activity8.75E-04
55GO:0015079: potassium ion transmembrane transporter activity1.17E-03
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.25E-03
57GO:0008508: bile acid:sodium symporter activity1.25E-03
58GO:0035250: UDP-galactosyltransferase activity1.25E-03
59GO:0048487: beta-tubulin binding1.25E-03
60GO:0016149: translation release factor activity, codon specific1.25E-03
61GO:0051861: glycolipid binding1.67E-03
62GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.67E-03
63GO:0008453: alanine-glyoxylate transaminase activity1.67E-03
64GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.67E-03
65GO:0050378: UDP-glucuronate 4-epimerase activity1.67E-03
66GO:0008374: O-acyltransferase activity2.13E-03
67GO:0018685: alkane 1-monooxygenase activity2.13E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding2.13E-03
69GO:0050662: coenzyme binding2.24E-03
70GO:0051082: unfolded protein binding2.51E-03
71GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.62E-03
72GO:0080030: methyl indole-3-acetate esterase activity2.62E-03
73GO:0004332: fructose-bisphosphate aldolase activity2.62E-03
74GO:0042578: phosphoric ester hydrolase activity2.62E-03
75GO:0004124: cysteine synthase activity3.15E-03
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.15E-03
77GO:0004849: uridine kinase activity3.15E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.15E-03
79GO:0019843: rRNA binding3.34E-03
80GO:0003824: catalytic activity3.41E-03
81GO:0009881: photoreceptor activity3.72E-03
82GO:0043295: glutathione binding3.72E-03
83GO:0052747: sinapyl alcohol dehydrogenase activity4.31E-03
84GO:0016491: oxidoreductase activity4.87E-03
85GO:0008135: translation factor activity, RNA binding4.93E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.93E-03
87GO:0003747: translation release factor activity5.59E-03
88GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.59E-03
89GO:0016844: strictosidine synthase activity6.27E-03
90GO:0030234: enzyme regulator activity6.99E-03
91GO:0044183: protein binding involved in protein folding7.73E-03
92GO:0047372: acylglycerol lipase activity7.73E-03
93GO:0015386: potassium:proton antiporter activity7.73E-03
94GO:0004860: protein kinase inhibitor activity7.73E-03
95GO:0008168: methyltransferase activity8.35E-03
96GO:0008378: galactosyltransferase activity8.49E-03
97GO:0045551: cinnamyl-alcohol dehydrogenase activity8.49E-03
98GO:0005198: structural molecule activity8.88E-03
99GO:0005315: inorganic phosphate transmembrane transporter activity9.29E-03
100GO:0051287: NAD binding9.58E-03
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.01E-02
102GO:0008266: poly(U) RNA binding1.01E-02
103GO:0050660: flavin adenine dinucleotide binding1.06E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.07E-02
105GO:0031409: pigment binding1.18E-02
106GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.18E-02
107GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.18E-02
108GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.18E-02
109GO:0016787: hydrolase activity1.26E-02
110GO:0051536: iron-sulfur cluster binding1.27E-02
111GO:0004407: histone deacetylase activity1.27E-02
112GO:0043424: protein histidine kinase binding1.37E-02
113GO:0004176: ATP-dependent peptidase activity1.46E-02
114GO:0016746: transferase activity, transferring acyl groups1.57E-02
115GO:0008514: organic anion transmembrane transporter activity1.76E-02
116GO:0003756: protein disulfide isomerase activity1.76E-02
117GO:0004872: receptor activity2.29E-02
118GO:0016791: phosphatase activity2.76E-02
119GO:0008483: transaminase activity2.88E-02
120GO:0008237: metallopeptidase activity2.88E-02
121GO:0008194: UDP-glycosyltransferase activity2.95E-02
122GO:0051213: dioxygenase activity3.13E-02
123GO:0016168: chlorophyll binding3.26E-02
124GO:0009931: calcium-dependent protein serine/threonine kinase activity3.39E-02
125GO:0004683: calmodulin-dependent protein kinase activity3.52E-02
126GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.65E-02
127GO:0016788: hydrolase activity, acting on ester bonds4.15E-02
128GO:0050897: cobalt ion binding4.19E-02
129GO:0003746: translation elongation factor activity4.48E-02
130GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.48E-02
131GO:0000987: core promoter proximal region sequence-specific DNA binding4.62E-02
132GO:0050661: NADP binding4.91E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
5GO:0009507: chloroplast6.06E-42
6GO:0009535: chloroplast thylakoid membrane1.26E-22
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.15E-17
8GO:0009570: chloroplast stroma9.46E-17
9GO:0009941: chloroplast envelope2.01E-16
10GO:0009534: chloroplast thylakoid4.56E-10
11GO:0048046: apoplast2.34E-06
12GO:0030095: chloroplast photosystem II4.16E-05
13GO:0009579: thylakoid4.56E-05
14GO:0010287: plastoglobule6.62E-05
15GO:0009782: photosystem I antenna complex2.43E-04
16GO:0010319: stromule3.66E-04
17GO:0009706: chloroplast inner membrane3.99E-04
18GO:0031969: chloroplast membrane5.13E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex5.39E-04
20GO:0009543: chloroplast thylakoid lumen5.66E-04
21GO:0009654: photosystem II oxygen evolving complex1.17E-03
22GO:0009536: plastid1.27E-03
23GO:0055035: plastid thylakoid membrane2.13E-03
24GO:0019898: extrinsic component of membrane2.40E-03
25GO:0005777: peroxisome3.55E-03
26GO:0009533: chloroplast stromal thylakoid3.72E-03
27GO:0031359: integral component of chloroplast outer membrane3.72E-03
28GO:0009501: amyloplast4.31E-03
29GO:0009707: chloroplast outer membrane4.83E-03
30GO:0005779: integral component of peroxisomal membrane4.93E-03
31GO:0016020: membrane6.69E-03
32GO:0016324: apical plasma membrane6.99E-03
33GO:0009508: plastid chromosome9.29E-03
34GO:0030076: light-harvesting complex1.10E-02
35GO:0042651: thylakoid membrane1.37E-02
36GO:0009523: photosystem II2.29E-02
37GO:0005759: mitochondrial matrix2.40E-02
38GO:0032580: Golgi cisterna membrane2.76E-02
39GO:0009295: nucleoid2.88E-02
40GO:0005778: peroxisomal membrane2.88E-02
41GO:0030529: intracellular ribonucleoprotein complex3.13E-02
42GO:0046658: anchored component of plasma membrane3.49E-02
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Gene type



Gene DE type