Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019428: allantoin biosynthetic process0.00E+00
2GO:0006721: terpenoid metabolic process0.00E+00
3GO:0051553: flavone biosynthetic process0.00E+00
4GO:0072660: maintenance of protein location in plasma membrane0.00E+00
5GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
6GO:0019427: acetyl-CoA biosynthetic process from acetate0.00E+00
7GO:0042742: defense response to bacterium6.45E-11
8GO:0006468: protein phosphorylation5.76E-07
9GO:0031349: positive regulation of defense response4.15E-06
10GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.02E-06
11GO:0043069: negative regulation of programmed cell death2.81E-05
12GO:0002239: response to oomycetes3.30E-05
13GO:0009617: response to bacterium5.66E-05
14GO:0060548: negative regulation of cell death5.93E-05
15GO:0009627: systemic acquired resistance7.22E-05
16GO:0070588: calcium ion transmembrane transport8.03E-05
17GO:0006952: defense response9.88E-05
18GO:0006099: tricarboxylic acid cycle1.60E-04
19GO:0031348: negative regulation of defense response1.69E-04
20GO:0051707: response to other organism2.29E-04
21GO:0055081: anion homeostasis3.02E-04
22GO:0046938: phytochelatin biosynthetic process3.02E-04
23GO:0043687: post-translational protein modification3.02E-04
24GO:0010230: alternative respiration3.02E-04
25GO:0046244: salicylic acid catabolic process3.02E-04
26GO:0006680: glucosylceramide catabolic process3.02E-04
27GO:0060862: negative regulation of floral organ abscission3.02E-04
28GO:0006144: purine nucleobase metabolic process3.02E-04
29GO:0006083: acetate metabolic process3.02E-04
30GO:0019276: UDP-N-acetylgalactosamine metabolic process3.02E-04
31GO:0034975: protein folding in endoplasmic reticulum3.02E-04
32GO:0001560: regulation of cell growth by extracellular stimulus3.02E-04
33GO:0019628: urate catabolic process3.02E-04
34GO:0006047: UDP-N-acetylglucosamine metabolic process3.02E-04
35GO:0042350: GDP-L-fucose biosynthetic process3.02E-04
36GO:0016487: farnesol metabolic process3.02E-04
37GO:0051245: negative regulation of cellular defense response3.02E-04
38GO:0006102: isocitrate metabolic process3.05E-04
39GO:0002229: defense response to oomycetes3.93E-04
40GO:0009751: response to salicylic acid4.04E-04
41GO:0010112: regulation of systemic acquired resistance4.52E-04
42GO:0015780: nucleotide-sugar transport4.52E-04
43GO:0009615: response to virus6.32E-04
44GO:0015865: purine nucleotide transport6.60E-04
45GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.60E-04
46GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.60E-04
47GO:0080185: effector dependent induction by symbiont of host immune response6.60E-04
48GO:0006695: cholesterol biosynthetic process6.60E-04
49GO:0015031: protein transport8.76E-04
50GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.07E-03
51GO:1900140: regulation of seedling development1.07E-03
52GO:0055074: calcium ion homeostasis1.07E-03
53GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.07E-03
54GO:0072661: protein targeting to plasma membrane1.07E-03
55GO:0015783: GDP-fucose transport1.07E-03
56GO:0006517: protein deglycosylation1.07E-03
57GO:0006011: UDP-glucose metabolic process1.07E-03
58GO:0042344: indole glucosinolate catabolic process1.07E-03
59GO:0006886: intracellular protein transport1.29E-03
60GO:0055114: oxidation-reduction process1.37E-03
61GO:0080147: root hair cell development1.44E-03
62GO:0006487: protein N-linked glycosylation1.44E-03
63GO:0009863: salicylic acid mediated signaling pathway1.44E-03
64GO:0010148: transpiration1.53E-03
65GO:0006516: glycoprotein catabolic process1.53E-03
66GO:0015700: arsenite transport1.53E-03
67GO:0051289: protein homotetramerization1.53E-03
68GO:0006515: misfolded or incompletely synthesized protein catabolic process1.53E-03
69GO:0000187: activation of MAPK activity1.53E-03
70GO:0046902: regulation of mitochondrial membrane permeability1.53E-03
71GO:0072334: UDP-galactose transmembrane transport1.53E-03
72GO:0009226: nucleotide-sugar biosynthetic process1.53E-03
73GO:0006612: protein targeting to membrane1.53E-03
74GO:0016998: cell wall macromolecule catabolic process1.74E-03
75GO:0008643: carbohydrate transport1.80E-03
76GO:0010188: response to microbial phytotoxin2.06E-03
77GO:0080142: regulation of salicylic acid biosynthetic process2.06E-03
78GO:0010363: regulation of plant-type hypersensitive response2.06E-03
79GO:0071219: cellular response to molecule of bacterial origin2.06E-03
80GO:0006090: pyruvate metabolic process2.63E-03
81GO:0030041: actin filament polymerization2.63E-03
82GO:0018279: protein N-linked glycosylation via asparagine2.63E-03
83GO:0046283: anthocyanin-containing compound metabolic process2.63E-03
84GO:0031365: N-terminal protein amino acid modification2.63E-03
85GO:0006465: signal peptide processing2.63E-03
86GO:0009697: salicylic acid biosynthetic process2.63E-03
87GO:0007165: signal transduction2.84E-03
88GO:0061025: membrane fusion3.05E-03
89GO:0009626: plant-type hypersensitive response3.20E-03
90GO:0009759: indole glucosinolate biosynthetic process3.24E-03
91GO:0010942: positive regulation of cell death3.24E-03
92GO:0060918: auxin transport3.24E-03
93GO:0047484: regulation of response to osmotic stress3.24E-03
94GO:0006623: protein targeting to vacuole3.27E-03
95GO:0009620: response to fungus3.33E-03
96GO:0000302: response to reactive oxygen species3.50E-03
97GO:0009612: response to mechanical stimulus3.90E-03
98GO:0006694: steroid biosynthetic process3.90E-03
99GO:0000911: cytokinesis by cell plate formation3.90E-03
100GO:0030163: protein catabolic process3.99E-03
101GO:0010200: response to chitin4.20E-03
102GO:0016192: vesicle-mediated transport4.30E-03
103GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.60E-03
104GO:0071446: cellular response to salicylic acid stimulus4.60E-03
105GO:1900056: negative regulation of leaf senescence4.60E-03
106GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c4.60E-03
107GO:0016126: sterol biosynthetic process5.06E-03
108GO:0030162: regulation of proteolysis5.35E-03
109GO:0006605: protein targeting5.35E-03
110GO:0031540: regulation of anthocyanin biosynthetic process5.35E-03
111GO:0009787: regulation of abscisic acid-activated signaling pathway5.35E-03
112GO:0006888: ER to Golgi vesicle-mediated transport5.97E-03
113GO:0010497: plasmodesmata-mediated intercellular transport6.13E-03
114GO:0010120: camalexin biosynthetic process6.13E-03
115GO:0010204: defense response signaling pathway, resistance gene-independent6.13E-03
116GO:2000031: regulation of salicylic acid mediated signaling pathway6.13E-03
117GO:0009699: phenylpropanoid biosynthetic process6.13E-03
118GO:0009932: cell tip growth6.13E-03
119GO:0006002: fructose 6-phosphate metabolic process6.13E-03
120GO:0050832: defense response to fungus6.57E-03
121GO:0009813: flavonoid biosynthetic process6.94E-03
122GO:0046685: response to arsenic-containing substance6.95E-03
123GO:0010119: regulation of stomatal movement7.65E-03
124GO:1900426: positive regulation of defense response to bacterium7.80E-03
125GO:2000280: regulation of root development7.80E-03
126GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.80E-03
127GO:0006032: chitin catabolic process8.70E-03
128GO:0010215: cellulose microfibril organization8.70E-03
129GO:0007166: cell surface receptor signaling pathway8.89E-03
130GO:0072593: reactive oxygen species metabolic process9.63E-03
131GO:0019684: photosynthesis, light reaction9.63E-03
132GO:0052544: defense response by callose deposition in cell wall9.63E-03
133GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.06E-02
134GO:0006108: malate metabolic process1.16E-02
135GO:0030036: actin cytoskeleton organization1.16E-02
136GO:0006541: glutamine metabolic process1.26E-02
137GO:0031347: regulation of defense response1.31E-02
138GO:0010053: root epidermal cell differentiation1.37E-02
139GO:0042343: indole glucosinolate metabolic process1.37E-02
140GO:0034976: response to endoplasmic reticulum stress1.48E-02
141GO:0000162: tryptophan biosynthetic process1.48E-02
142GO:0010224: response to UV-B1.52E-02
143GO:0015992: proton transport1.82E-02
144GO:0098542: defense response to other organism1.82E-02
145GO:0048278: vesicle docking1.82E-02
146GO:2000022: regulation of jasmonic acid mediated signaling pathway1.95E-02
147GO:0019748: secondary metabolic process1.95E-02
148GO:0009814: defense response, incompatible interaction1.95E-02
149GO:0045454: cell redox homeostasis2.16E-02
150GO:0009306: protein secretion2.20E-02
151GO:0009742: brassinosteroid mediated signaling pathway2.21E-02
152GO:0055085: transmembrane transport2.45E-02
153GO:0010051: xylem and phloem pattern formation2.46E-02
154GO:0010197: polar nucleus fusion2.59E-02
155GO:0010183: pollen tube guidance2.87E-02
156GO:0010193: response to ozone3.01E-02
157GO:0006891: intra-Golgi vesicle-mediated transport3.01E-02
158GO:0016132: brassinosteroid biosynthetic process3.01E-02
159GO:0006464: cellular protein modification process3.46E-02
160GO:0010150: leaf senescence3.61E-02
161GO:0009816: defense response to bacterium, incompatible interaction4.07E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.07E-02
163GO:0006906: vesicle fusion4.24E-02
164GO:0006508: proteolysis4.45E-02
165GO:0016049: cell growth4.56E-02
166GO:0008219: cell death4.73E-02
167GO:0009817: defense response to fungus, incompatible interaction4.73E-02
168GO:0006979: response to oxidative stress4.87E-02
169GO:0009832: plant-type cell wall biogenesis4.90E-02
RankGO TermAdjusted P value
1GO:0052873: FMN reductase (NADPH) activity0.00E+00
2GO:0005212: structural constituent of eye lens0.00E+00
3GO:0000247: C-8 sterol isomerase activity0.00E+00
4GO:0047750: cholestenol delta-isomerase activity0.00E+00
5GO:0047886: farnesol dehydrogenase activity0.00E+00
6GO:0033971: hydroxyisourate hydrolase activity0.00E+00
7GO:0008752: FMN reductase activity0.00E+00
8GO:0047598: 7-dehydrocholesterol reductase activity0.00E+00
9GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
10GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
11GO:0033759: flavone synthase activity0.00E+00
12GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
13GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
14GO:0009918: sterol delta7 reductase activity0.00E+00
15GO:0004576: oligosaccharyl transferase activity4.33E-07
16GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity9.78E-07
17GO:0005524: ATP binding2.16E-06
18GO:0016301: kinase activity2.36E-06
19GO:0004674: protein serine/threonine kinase activity3.27E-06
20GO:0004656: procollagen-proline 4-dioxygenase activity3.29E-06
21GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.08E-05
22GO:0004449: isocitrate dehydrogenase (NAD+) activity3.30E-05
23GO:0005388: calcium-transporting ATPase activity5.53E-05
24GO:0004348: glucosylceramidase activity3.02E-04
25GO:0071992: phytochelatin transmembrane transporter activity3.02E-04
26GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.02E-04
27GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.02E-04
28GO:0050577: GDP-L-fucose synthase activity3.02E-04
29GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.02E-04
30GO:0003987: acetate-CoA ligase activity3.02E-04
31GO:1901149: salicylic acid binding3.02E-04
32GO:0015085: calcium ion transmembrane transporter activity3.02E-04
33GO:0046870: cadmium ion binding3.02E-04
34GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity3.02E-04
35GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.02E-04
36GO:0004714: transmembrane receptor protein tyrosine kinase activity3.05E-04
37GO:0004776: succinate-CoA ligase (GDP-forming) activity6.60E-04
38GO:0004775: succinate-CoA ligase (ADP-forming) activity6.60E-04
39GO:0050897: cobalt ion binding1.06E-03
40GO:0004148: dihydrolipoyl dehydrogenase activity1.07E-03
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.07E-03
42GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.07E-03
43GO:0005457: GDP-fucose transmembrane transporter activity1.07E-03
44GO:0004049: anthranilate synthase activity1.07E-03
45GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.07E-03
46GO:0004190: aspartic-type endopeptidase activity1.17E-03
47GO:0008565: protein transporter activity1.19E-03
48GO:0031418: L-ascorbic acid binding1.44E-03
49GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.53E-03
50GO:0000339: RNA cap binding1.53E-03
51GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.53E-03
52GO:0035529: NADH pyrophosphatase activity1.53E-03
53GO:0009678: hydrogen-translocating pyrophosphatase activity1.53E-03
54GO:0033612: receptor serine/threonine kinase binding1.74E-03
55GO:0043495: protein anchor2.06E-03
56GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor2.06E-03
57GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity2.06E-03
58GO:0004470: malic enzyme activity2.06E-03
59GO:0051287: NAD binding2.08E-03
60GO:0003756: protein disulfide isomerase activity2.25E-03
61GO:0047631: ADP-ribose diphosphatase activity2.63E-03
62GO:0005471: ATP:ADP antiporter activity2.63E-03
63GO:0045431: flavonol synthase activity2.63E-03
64GO:0015301: anion:anion antiporter activity2.63E-03
65GO:0005459: UDP-galactose transmembrane transporter activity2.63E-03
66GO:0005452: inorganic anion exchanger activity2.63E-03
67GO:0005516: calmodulin binding2.94E-03
68GO:0050662: coenzyme binding3.05E-03
69GO:0000210: NAD+ diphosphatase activity3.24E-03
70GO:0004029: aldehyde dehydrogenase (NAD) activity3.24E-03
71GO:0016208: AMP binding3.24E-03
72GO:0004672: protein kinase activity3.77E-03
73GO:0004012: phospholipid-translocating ATPase activity3.90E-03
74GO:0004602: glutathione peroxidase activity3.90E-03
75GO:0008320: protein transmembrane transporter activity4.60E-03
76GO:0005338: nucleotide-sugar transmembrane transporter activity4.60E-03
77GO:0008235: metalloexopeptidase activity4.60E-03
78GO:0004427: inorganic diphosphatase activity4.60E-03
79GO:0008121: ubiquinol-cytochrome-c reductase activity4.60E-03
80GO:0003872: 6-phosphofructokinase activity4.60E-03
81GO:0004708: MAP kinase kinase activity5.35E-03
82GO:0030247: polysaccharide binding5.97E-03
83GO:0003824: catalytic activity6.33E-03
84GO:0015297: antiporter activity7.06E-03
85GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.80E-03
86GO:0004568: chitinase activity8.70E-03
87GO:0004713: protein tyrosine kinase activity8.70E-03
88GO:0008794: arsenate reductase (glutaredoxin) activity9.63E-03
89GO:0004177: aminopeptidase activity9.63E-03
90GO:0008559: xenobiotic-transporting ATPase activity9.63E-03
91GO:0005484: SNAP receptor activity1.08E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.16E-02
93GO:0005262: calcium channel activity1.16E-02
94GO:0008061: chitin binding1.37E-02
95GO:0005509: calcium ion binding1.43E-02
96GO:0031625: ubiquitin protein ligase binding1.62E-02
97GO:0004707: MAP kinase activity1.82E-02
98GO:0016779: nucleotidyltransferase activity1.95E-02
99GO:0008810: cellulase activity2.07E-02
100GO:0015035: protein disulfide oxidoreductase activity2.15E-02
101GO:0016746: transferase activity, transferring acyl groups2.15E-02
102GO:0008514: organic anion transmembrane transporter activity2.20E-02
103GO:0030276: clathrin binding2.59E-02
104GO:0010181: FMN binding2.73E-02
105GO:0016853: isomerase activity2.73E-02
106GO:0005507: copper ion binding2.90E-02
107GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.31E-02
108GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.36E-02
109GO:0046872: metal ion binding3.48E-02
110GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.61E-02
111GO:0051213: dioxygenase activity3.92E-02
112GO:0004806: triglyceride lipase activity4.40E-02
113GO:0005506: iron ion binding4.71E-02
114GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.73E-02
115GO:0015238: drug transmembrane transporter activity4.90E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.34E-11
2GO:0016021: integral component of membrane5.20E-11
3GO:0005783: endoplasmic reticulum1.50E-09
4GO:0005774: vacuolar membrane5.71E-08
5GO:0008250: oligosaccharyltransferase complex9.78E-07
6GO:0005789: endoplasmic reticulum membrane4.70E-06
7GO:0030665: clathrin-coated vesicle membrane2.15E-05
8GO:0005794: Golgi apparatus1.21E-04
9GO:0031234: extrinsic component of cytoplasmic side of plasma membrane3.02E-04
10GO:0005787: signal peptidase complex3.02E-04
11GO:0005911: cell-cell junction3.02E-04
12GO:0045252: oxoglutarate dehydrogenase complex3.02E-04
13GO:0017119: Golgi transport complex6.23E-04
14GO:0030134: ER to Golgi transport vesicle6.60E-04
15GO:0005773: vacuole6.95E-04
16GO:0005802: trans-Golgi network9.77E-04
17GO:0000139: Golgi membrane1.02E-03
18GO:0005750: mitochondrial respiratory chain complex III1.04E-03
19GO:0005945: 6-phosphofructokinase complex2.63E-03
20GO:0005887: integral component of plasma membrane3.02E-03
21GO:0009504: cell plate3.27E-03
22GO:0005768: endosome4.29E-03
23GO:0030131: clathrin adaptor complex5.35E-03
24GO:0005788: endoplasmic reticulum lumen5.35E-03
25GO:0009514: glyoxysome6.13E-03
26GO:0031090: organelle membrane6.95E-03
27GO:0010494: cytoplasmic stress granule6.95E-03
28GO:0009505: plant-type cell wall8.21E-03
29GO:0005740: mitochondrial envelope8.70E-03
30GO:0031902: late endosome membrane9.98E-03
31GO:0031225: anchored component of membrane1.05E-02
32GO:0030176: integral component of endoplasmic reticulum membrane1.37E-02
33GO:0005795: Golgi stack1.37E-02
34GO:0005747: mitochondrial respiratory chain complex I1.79E-02
35GO:0016020: membrane2.25E-02
36GO:0009506: plasmodesma2.34E-02
37GO:0048046: apoplast2.58E-02
38GO:0005618: cell wall3.08E-02
39GO:0032580: Golgi cisterna membrane3.46E-02
40GO:0000932: P-body3.92E-02
41GO:0019005: SCF ubiquitin ligase complex4.73E-02
42GO:0000151: ubiquitin ligase complex4.73E-02
43GO:0046658: anchored component of plasma membrane4.75E-02
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Gene type



Gene DE type