Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0006642: triglyceride mobilization0.00E+00
10GO:0006223: uracil salvage0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0015805: S-adenosyl-L-methionine transport0.00E+00
13GO:0006412: translation7.40E-13
14GO:0042254: ribosome biogenesis1.48E-10
15GO:0009658: chloroplast organization6.58E-08
16GO:0015976: carbon utilization1.15E-07
17GO:0032544: plastid translation3.33E-06
18GO:0010207: photosystem II assembly2.15E-05
19GO:0010037: response to carbon dioxide2.51E-05
20GO:2000122: negative regulation of stomatal complex development2.51E-05
21GO:0009735: response to cytokinin3.85E-05
22GO:0010236: plastoquinone biosynthetic process4.05E-05
23GO:0006633: fatty acid biosynthetic process4.94E-05
24GO:0042372: phylloquinone biosynthetic process8.36E-05
25GO:0009409: response to cold1.54E-04
26GO:0043489: RNA stabilization1.82E-04
27GO:0046166: glyceraldehyde-3-phosphate biosynthetic process1.82E-04
28GO:0010442: guard cell morphogenesis1.82E-04
29GO:0000481: maturation of 5S rRNA1.82E-04
30GO:1902458: positive regulation of stomatal opening1.82E-04
31GO:0034337: RNA folding1.82E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.82E-04
33GO:0010206: photosystem II repair2.17E-04
34GO:0010027: thylakoid membrane organization2.47E-04
35GO:0015979: photosynthesis3.04E-04
36GO:0045454: cell redox homeostasis3.32E-04
37GO:0043085: positive regulation of catalytic activity3.54E-04
38GO:0071258: cellular response to gravity4.10E-04
39GO:1903426: regulation of reactive oxygen species biosynthetic process4.10E-04
40GO:0052541: plant-type cell wall cellulose metabolic process4.10E-04
41GO:0006006: glucose metabolic process4.63E-04
42GO:0019253: reductive pentose-phosphate cycle5.21E-04
43GO:0010020: chloroplast fission5.21E-04
44GO:2001295: malonyl-CoA biosynthetic process6.69E-04
45GO:0032504: multicellular organism reproduction6.69E-04
46GO:0010581: regulation of starch biosynthetic process6.69E-04
47GO:0019563: glycerol catabolic process6.69E-04
48GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis9.55E-04
49GO:2001141: regulation of RNA biosynthetic process9.55E-04
50GO:0006241: CTP biosynthetic process9.55E-04
51GO:0009650: UV protection9.55E-04
52GO:0006165: nucleoside diphosphate phosphorylation9.55E-04
53GO:0006228: UTP biosynthetic process9.55E-04
54GO:0006424: glutamyl-tRNA aminoacylation9.55E-04
55GO:0009411: response to UV1.02E-03
56GO:0042742: defense response to bacterium1.23E-03
57GO:0006808: regulation of nitrogen utilization1.27E-03
58GO:0006183: GTP biosynthetic process1.27E-03
59GO:0044206: UMP salvage1.27E-03
60GO:0000413: protein peptidyl-prolyl isomerization1.29E-03
61GO:0042335: cuticle development1.29E-03
62GO:0043097: pyrimidine nucleoside salvage1.61E-03
63GO:0032543: mitochondrial translation1.61E-03
64GO:0045038: protein import into chloroplast thylakoid membrane1.61E-03
65GO:0031365: N-terminal protein amino acid modification1.61E-03
66GO:0042549: photosystem II stabilization1.98E-03
67GO:0006206: pyrimidine nucleobase metabolic process1.98E-03
68GO:0032973: amino acid export1.98E-03
69GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.38E-03
70GO:0010189: vitamin E biosynthetic process2.38E-03
71GO:0009854: oxidative photosynthetic carbon pathway2.38E-03
72GO:0006400: tRNA modification2.80E-03
73GO:0009610: response to symbiotic fungus2.80E-03
74GO:0009772: photosynthetic electron transport in photosystem II2.80E-03
75GO:0043090: amino acid import2.80E-03
76GO:0030497: fatty acid elongation2.80E-03
77GO:0010196: nonphotochemical quenching2.80E-03
78GO:0010411: xyloglucan metabolic process2.89E-03
79GO:0009817: defense response to fungus, incompatible interaction3.20E-03
80GO:0032508: DNA duplex unwinding3.24E-03
81GO:2000070: regulation of response to water deprivation3.24E-03
82GO:0046620: regulation of organ growth3.24E-03
83GO:0010119: regulation of stomatal movement3.70E-03
84GO:0006526: arginine biosynthetic process3.71E-03
85GO:0009932: cell tip growth3.71E-03
86GO:0071482: cellular response to light stimulus3.71E-03
87GO:0015996: chlorophyll catabolic process3.71E-03
88GO:0007186: G-protein coupled receptor signaling pathway3.71E-03
89GO:0019430: removal of superoxide radicals3.71E-03
90GO:0009051: pentose-phosphate shunt, oxidative branch4.20E-03
91GO:0080144: amino acid homeostasis4.20E-03
92GO:0010380: regulation of chlorophyll biosynthetic process4.71E-03
93GO:0043069: negative regulation of programmed cell death5.24E-03
94GO:0048829: root cap development5.24E-03
95GO:0045036: protein targeting to chloroplast5.24E-03
96GO:0042546: cell wall biogenesis5.42E-03
97GO:0006352: DNA-templated transcription, initiation5.79E-03
98GO:0018119: peptidyl-cysteine S-nitrosylation5.79E-03
99GO:0000038: very long-chain fatty acid metabolic process5.79E-03
100GO:0009773: photosynthetic electron transport in photosystem I5.79E-03
101GO:0019684: photosynthesis, light reaction5.79E-03
102GO:0009089: lysine biosynthetic process via diaminopimelate5.79E-03
103GO:0009073: aromatic amino acid family biosynthetic process5.79E-03
104GO:0006790: sulfur compound metabolic process6.35E-03
105GO:0045037: protein import into chloroplast stroma6.35E-03
106GO:0006094: gluconeogenesis6.94E-03
107GO:0055114: oxidation-reduction process6.97E-03
108GO:0010143: cutin biosynthetic process7.55E-03
109GO:0046854: phosphatidylinositol phosphorylation8.18E-03
110GO:0006096: glycolytic process8.30E-03
111GO:0006636: unsaturated fatty acid biosynthetic process8.82E-03
112GO:0006071: glycerol metabolic process8.82E-03
113GO:0006833: water transport8.82E-03
114GO:0010025: wax biosynthetic process8.82E-03
115GO:0005992: trehalose biosynthetic process9.48E-03
116GO:0009116: nucleoside metabolic process9.48E-03
117GO:0000027: ribosomal large subunit assembly9.48E-03
118GO:0010026: trichome differentiation1.02E-02
119GO:0003333: amino acid transmembrane transport1.09E-02
120GO:0061077: chaperone-mediated protein folding1.09E-02
121GO:0006284: base-excision repair1.31E-02
122GO:0080022: primary root development1.46E-02
123GO:0034220: ion transmembrane transport1.46E-02
124GO:0009790: embryo development1.47E-02
125GO:0006662: glycerol ether metabolic process1.54E-02
126GO:0010182: sugar mediated signaling pathway1.54E-02
127GO:0006520: cellular amino acid metabolic process1.54E-02
128GO:0007018: microtubule-based movement1.62E-02
129GO:0071555: cell wall organization1.64E-02
130GO:0009734: auxin-activated signaling pathway1.72E-02
131GO:0009451: RNA modification1.78E-02
132GO:0002229: defense response to oomycetes1.79E-02
133GO:0032502: developmental process1.87E-02
134GO:0009793: embryo development ending in seed dormancy1.96E-02
135GO:0030163: protein catabolic process1.96E-02
136GO:0009627: systemic acquired resistance2.51E-02
137GO:0009631: cold acclimation3.11E-02
138GO:0006508: proteolysis3.15E-02
139GO:0006865: amino acid transport3.22E-02
140GO:0009637: response to blue light3.32E-02
141GO:0009853: photorespiration3.32E-02
142GO:0045087: innate immune response3.32E-02
143GO:0034599: cellular response to oxidative stress3.43E-02
144GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.44E-02
145GO:0006839: mitochondrial transport3.65E-02
146GO:0030001: metal ion transport3.65E-02
147GO:0006631: fatty acid metabolic process3.76E-02
148GO:0042542: response to hydrogen peroxide3.87E-02
149GO:0010114: response to red light3.98E-02
150GO:0009926: auxin polar transport3.98E-02
151GO:0006869: lipid transport4.36E-02
152GO:0016042: lipid catabolic process4.76E-02
153GO:0006281: DNA repair4.89E-02
154GO:0009585: red, far-red light phototransduction4.92E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0008887: glycerate kinase activity0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0019843: rRNA binding1.65E-15
7GO:0003735: structural constituent of ribosome1.86E-14
8GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.95E-06
9GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor5.87E-06
10GO:0004089: carbonate dehydratase activity1.74E-05
11GO:0005528: FK506 binding3.69E-05
12GO:0051920: peroxiredoxin activity8.36E-05
13GO:0016209: antioxidant activity1.43E-04
14GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.82E-04
15GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity1.82E-04
16GO:0004807: triose-phosphate isomerase activity1.82E-04
17GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity1.82E-04
18GO:0080132: fatty acid alpha-hydroxylase activity1.82E-04
19GO:0008047: enzyme activator activity3.05E-04
20GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.10E-04
21GO:0042389: omega-3 fatty acid desaturase activity4.10E-04
22GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity4.10E-04
23GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.10E-04
24GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.10E-04
25GO:0008266: poly(U) RNA binding5.21E-04
26GO:0004075: biotin carboxylase activity6.69E-04
27GO:0017150: tRNA dihydrouridine synthase activity6.69E-04
28GO:0050734: hydroxycinnamoyltransferase activity6.69E-04
29GO:0004148: dihydrolipoyl dehydrogenase activity6.69E-04
30GO:0004550: nucleoside diphosphate kinase activity9.55E-04
31GO:0043023: ribosomal large subunit binding9.55E-04
32GO:0008097: 5S rRNA binding9.55E-04
33GO:0004659: prenyltransferase activity1.27E-03
34GO:0001053: plastid sigma factor activity1.27E-03
35GO:0004845: uracil phosphoribosyltransferase activity1.27E-03
36GO:0004345: glucose-6-phosphate dehydrogenase activity1.27E-03
37GO:0016836: hydro-lyase activity1.27E-03
38GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.27E-03
39GO:0004045: aminoacyl-tRNA hydrolase activity1.27E-03
40GO:0016987: sigma factor activity1.27E-03
41GO:0010328: auxin influx transmembrane transporter activity1.27E-03
42GO:0052793: pectin acetylesterase activity1.27E-03
43GO:0004791: thioredoxin-disulfide reductase activity1.49E-03
44GO:0003989: acetyl-CoA carboxylase activity1.61E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity1.61E-03
46GO:0009922: fatty acid elongase activity1.61E-03
47GO:0016773: phosphotransferase activity, alcohol group as acceptor1.61E-03
48GO:0016762: xyloglucan:xyloglucosyl transferase activity1.71E-03
49GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.94E-03
50GO:0016208: AMP binding1.98E-03
51GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.38E-03
52GO:0004849: uridine kinase activity2.38E-03
53GO:0003729: mRNA binding2.71E-03
54GO:0008235: metalloexopeptidase activity2.80E-03
55GO:0016798: hydrolase activity, acting on glycosyl bonds2.89E-03
56GO:0008236: serine-type peptidase activity3.04E-03
57GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.71E-03
58GO:0008889: glycerophosphodiester phosphodiesterase activity4.20E-03
59GO:0050661: NADP binding4.61E-03
60GO:0004805: trehalose-phosphatase activity5.24E-03
61GO:0004177: aminopeptidase activity5.79E-03
62GO:0051287: NAD binding6.31E-03
63GO:0052689: carboxylic ester hydrolase activity7.69E-03
64GO:0003777: microtubule motor activity7.77E-03
65GO:0015171: amino acid transmembrane transporter activity7.77E-03
66GO:0102337: 3-oxo-cerotoyl-CoA synthase activity8.82E-03
67GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity8.82E-03
68GO:0102336: 3-oxo-arachidoyl-CoA synthase activity8.82E-03
69GO:0003723: RNA binding1.11E-02
70GO:0003727: single-stranded RNA binding1.31E-02
71GO:0047134: protein-disulfide reductase activity1.38E-02
72GO:0004252: serine-type endopeptidase activity1.39E-02
73GO:0008080: N-acetyltransferase activity1.54E-02
74GO:0050662: coenzyme binding1.62E-02
75GO:0008017: microtubule binding1.82E-02
76GO:0005200: structural constituent of cytoskeleton2.14E-02
77GO:0016722: oxidoreductase activity, oxidizing metal ions2.14E-02
78GO:0042802: identical protein binding2.21E-02
79GO:0015250: water channel activity2.32E-02
80GO:0004601: peroxidase activity2.69E-02
81GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.71E-02
82GO:0016788: hydrolase activity, acting on ester bonds2.74E-02
83GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.81E-02
84GO:0016740: transferase activity2.95E-02
85GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.25E-02
86GO:0003993: acid phosphatase activity3.43E-02
87GO:0005507: copper ion binding3.57E-02
88GO:0051539: 4 iron, 4 sulfur cluster binding3.65E-02
89GO:0042803: protein homodimerization activity4.17E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding4.21E-02
91GO:0005525: GTP binding4.26E-02
92GO:0015293: symporter activity4.32E-02
93GO:0005198: structural molecule activity4.32E-02
94GO:0003924: GTPase activity4.89E-02
95GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.92E-02
96GO:0005509: calcium ion binding4.97E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009570: chloroplast stroma2.90E-52
3GO:0009507: chloroplast7.26E-50
4GO:0009941: chloroplast envelope1.81E-36
5GO:0009579: thylakoid1.44E-23
6GO:0031977: thylakoid lumen1.74E-14
7GO:0009535: chloroplast thylakoid membrane5.22E-14
8GO:0009543: chloroplast thylakoid lumen7.16E-14
9GO:0005840: ribosome3.58E-13
10GO:0009534: chloroplast thylakoid1.21E-06
11GO:0010319: stromule1.09E-05
12GO:0000311: plastid large ribosomal subunit1.40E-05
13GO:0048046: apoplast4.30E-05
14GO:0009654: photosystem II oxygen evolving complex4.33E-05
15GO:0019898: extrinsic component of membrane1.33E-04
16GO:0009547: plastid ribosome1.82E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex1.82E-04
18GO:0016020: membrane2.47E-04
19GO:0042170: plastid membrane4.10E-04
20GO:0009536: plastid5.05E-04
21GO:0030095: chloroplast photosystem II5.21E-04
22GO:0009528: plastid inner membrane6.69E-04
23GO:0042651: thylakoid membrane7.90E-04
24GO:0009532: plastid stroma8.65E-04
25GO:0009527: plastid outer membrane1.27E-03
26GO:0009706: chloroplast inner membrane1.48E-03
27GO:0009533: chloroplast stromal thylakoid2.80E-03
28GO:0031225: anchored component of membrane2.91E-03
29GO:0009707: chloroplast outer membrane3.20E-03
30GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.20E-03
31GO:0045298: tubulin complex4.20E-03
32GO:0046658: anchored component of plasma membrane4.23E-03
33GO:0022626: cytosolic ribosome5.29E-03
34GO:0032040: small-subunit processome6.35E-03
35GO:0005874: microtubule6.49E-03
36GO:0031969: chloroplast membrane6.77E-03
37GO:0009505: plant-type cell wall6.81E-03
38GO:0000312: plastid small ribosomal subunit7.55E-03
39GO:0015935: small ribosomal subunit1.09E-02
40GO:0005871: kinesin complex1.38E-02
41GO:0005618: cell wall1.82E-02
42GO:0005778: peroxisomal membrane2.14E-02
43GO:0030529: intracellular ribonucleoprotein complex2.32E-02
44GO:0015934: large ribosomal subunit3.11E-02
45GO:0022625: cytosolic large ribosomal subunit3.50E-02
46GO:0005819: spindle3.54E-02
<
Gene type



Gene DE type