co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0009768: photosynthesis, light harvesting in photosystem I	5.72E-20
4	GO:0018298: protein-chromophore linkage	1.64E-14
5	GO:0015979: photosynthesis	3.81E-13
6	GO:0010218: response to far red light	2.69E-10
7	GO:0010114: response to red light	6.30E-08
8	GO:0009645: response to low light intensity stimulus	1.02E-07
9	GO:0009769: photosynthesis, light harvesting in photosystem II	1.02E-07
10	GO:0009637: response to blue light	1.76E-06
11	GO:0009644: response to high light intensity	3.67E-06
12	GO:0010600: regulation of auxin biosynthetic process	3.86E-06
13	GO:0009416: response to light stimulus	6.61E-06
14	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.44E-05
15	GO:0010196: nonphotochemical quenching	1.98E-05
16	GO:0010928: regulation of auxin mediated signaling pathway	2.62E-05
17	GO:0015812: gamma-aminobutyric acid transport	6.10E-05
18	GO:0032958: inositol phosphate biosynthetic process	6.10E-05
19	GO:1990641: response to iron ion starvation	6.10E-05
20	GO:0009585: red, far-red light phototransduction	1.38E-04
21	GO:0006101: citrate metabolic process	1.48E-04
22	GO:0051170: nuclear import	1.48E-04
23	GO:0003333: amino acid transmembrane transport	2.01E-04
24	GO:0048511: rhythmic process	2.01E-04
25	GO:0010017: red or far-red light signaling pathway	2.21E-04
26	GO:1902448: positive regulation of shade avoidance	2.51E-04
27	GO:0006598: polyamine catabolic process	2.51E-04
28	GO:0006020: inositol metabolic process	3.65E-04
29	GO:0044211: CTP salvage	3.65E-04
30	GO:0007623: circadian rhythm	4.63E-04
31	GO:0015846: polyamine transport	4.88E-04
32	GO:0030104: water homeostasis	4.88E-04
33	GO:0009765: photosynthesis, light harvesting	4.88E-04
34	GO:0044206: UMP salvage	4.88E-04
35	GO:0048578: positive regulation of long-day photoperiodism, flowering	6.19E-04
36	GO:0043097: pyrimidine nucleoside salvage	6.19E-04
37	GO:0015995: chlorophyll biosynthetic process	6.93E-04
38	GO:0009635: response to herbicide	7.57E-04
39	GO:0006206: pyrimidine nucleobase metabolic process	7.57E-04
40	GO:0000160: phosphorelay signal transduction system	8.02E-04
41	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.01E-04
42	GO:0051510: regulation of unidimensional cell growth	1.05E-03
43	GO:0010161: red light signaling pathway	1.05E-03
44	GO:1900056: negative regulation of leaf senescence	1.05E-03
45	GO:0042542: response to hydrogen peroxide	1.17E-03
46	GO:0009704: de-etiolation	1.21E-03
47	GO:0006102: isocitrate metabolic process	1.21E-03
48	GO:0009640: photomorphogenesis	1.22E-03
49	GO:0008643: carbohydrate transport	1.31E-03
50	GO:0010099: regulation of photomorphogenesis	1.38E-03
51	GO:0009827: plant-type cell wall modification	1.38E-03
52	GO:0090333: regulation of stomatal closure	1.55E-03
53	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.73E-03
54	GO:0010380: regulation of chlorophyll biosynthetic process	1.73E-03
55	GO:0055062: phosphate ion homeostasis	1.92E-03
56	GO:0009641: shade avoidance	1.92E-03
57	GO:0018107: peptidyl-threonine phosphorylation	2.52E-03
58	GO:0009718: anthocyanin-containing compound biosynthetic process	2.52E-03
59	GO:0009409: response to cold	2.70E-03
60	GO:0010207: photosystem II assembly	2.74E-03
61	GO:0009266: response to temperature stimulus	2.74E-03
62	GO:0006355: regulation of transcription, DNA-templated	2.85E-03
63	GO:0090351: seedling development	2.96E-03
64	GO:0009269: response to desiccation	3.89E-03
65	GO:0009693: ethylene biosynthetic process	4.40E-03
66	GO:0071215: cellular response to abscisic acid stimulus	4.40E-03
67	GO:0055085: transmembrane transport	4.71E-03
68	GO:0006351: transcription, DNA-templated	5.25E-03
69	GO:0009741: response to brassinosteroid	5.46E-03
70	GO:0006814: sodium ion transport	5.74E-03
71	GO:0042752: regulation of circadian rhythm	5.74E-03
72	GO:0009791: post-embryonic development	6.03E-03
73	GO:0009658: chloroplast organization	6.06E-03
74	GO:0000302: response to reactive oxygen species	6.32E-03
75	GO:1901657: glycosyl compound metabolic process	6.91E-03
76	GO:0080167: response to karrikin	7.51E-03
77	GO:0045892: negative regulation of transcription, DNA-templated	9.14E-03
78	GO:0048573: photoperiodism, flowering	9.14E-03
79	GO:0009817: defense response to fungus, incompatible interaction	9.82E-03
80	GO:0010119: regulation of stomatal movement	1.09E-02
81	GO:0009910: negative regulation of flower development	1.09E-02
82	GO:0006099: tricarboxylic acid cycle	1.20E-02
83	GO:0006812: cation transport	1.63E-02
84	GO:0009908: flower development	1.79E-02
85	GO:0009735: response to cytokinin	1.81E-02
86	GO:0009909: regulation of flower development	1.84E-02
87	GO:0035556: intracellular signal transduction	2.09E-02
88	GO:0007165: signal transduction	2.16E-02
89	GO:0009624: response to nematode	2.20E-02
90	GO:0009737: response to abscisic acid	2.22E-02
91	GO:0018105: peptidyl-serine phosphorylation	2.25E-02
92	GO:0009742: brassinosteroid mediated signaling pathway	2.29E-02
93	GO:0006457: protein folding	2.56E-02
94	GO:0009058: biosynthetic process	2.68E-02
95	GO:0010228: vegetative to reproductive phase transition of meristem	3.36E-02
96	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.52E-02
97	GO:0010468: regulation of gene expression	3.68E-02
98	GO:0009651: response to salt stress	3.90E-02
99	GO:0009826: unidimensional cell growth	4.31E-02
100	GO:0055114: oxidation-reduction process	4.87E-02
101	GO:0009723: response to ethylene	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0031409: pigment binding	1.77E-20
8	GO:0016168: chlorophyll binding	4.06E-17
9	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	6.10E-05
10	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	6.10E-05
11	GO:0000829: inositol heptakisphosphate kinase activity	6.10E-05
12	GO:0080079: cellobiose glucosidase activity	6.10E-05
13	GO:0000828: inositol hexakisphosphate kinase activity	6.10E-05
14	GO:0016630: protochlorophyllide reductase activity	1.48E-04
15	GO:0015180: L-alanine transmembrane transporter activity	1.48E-04
16	GO:0003994: aconitate hydratase activity	1.48E-04
17	GO:0046592: polyamine oxidase activity	2.51E-04
18	GO:0015189: L-lysine transmembrane transporter activity	3.65E-04
19	GO:0048027: mRNA 5'-UTR binding	3.65E-04
20	GO:0015181: arginine transmembrane transporter activity	3.65E-04
21	GO:0015203: polyamine transmembrane transporter activity	3.65E-04
22	GO:0015297: antiporter activity	4.37E-04
23	GO:0000156: phosphorelay response regulator activity	4.70E-04
24	GO:0004845: uracil phosphoribosyltransferase activity	4.88E-04
25	GO:0005313: L-glutamate transmembrane transporter activity	4.88E-04
26	GO:0015562: efflux transmembrane transporter activity	7.57E-04
27	GO:0004849: uridine kinase activity	9.01E-04
28	GO:0015293: symporter activity	1.36E-03
29	GO:0000989: transcription factor activity, transcription factor binding	1.55E-03
30	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.55E-03
31	GO:0046872: metal ion binding	1.63E-03
32	GO:0015174: basic amino acid transmembrane transporter activity	1.73E-03
33	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.92E-03
34	GO:0047372: acylglycerol lipase activity	2.12E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	2.52E-03
36	GO:0005315: inorganic phosphate transmembrane transporter activity	2.52E-03
37	GO:0004565: beta-galactosidase activity	2.52E-03
38	GO:0008131: primary amine oxidase activity	2.74E-03
39	GO:0005515: protein binding	2.89E-03
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.94E-03
41	GO:0003712: transcription cofactor activity	2.96E-03
42	GO:0008324: cation transmembrane transporter activity	3.65E-03
43	GO:0005351: sugar:proton symporter activity	3.84E-03
44	GO:0004707: MAP kinase activity	3.89E-03
45	GO:0008514: organic anion transmembrane transporter activity	4.65E-03
46	GO:0004497: monooxygenase activity	7.51E-03
47	GO:0102483: scopolin beta-glucosidase activity	9.14E-03
48	GO:0008422: beta-glucosidase activity	1.23E-02
49	GO:0051539: 4 iron, 4 sulfur cluster binding	1.27E-02
50	GO:0004672: protein kinase activity	1.39E-02
51	GO:0005198: structural molecule activity	1.51E-02
52	GO:0015171: amino acid transmembrane transporter activity	1.84E-02
53	GO:0004674: protein serine/threonine kinase activity	1.90E-02
54	GO:0022857: transmembrane transporter activity	2.11E-02
55	GO:0016787: hydrolase activity	2.23E-02
56	GO:0019825: oxygen binding	2.82E-02
57	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.84E-02
58	GO:0015144: carbohydrate transmembrane transporter activity	2.94E-02
59	GO:0008270: zinc ion binding	3.45E-02
60	GO:0005506: iron ion binding	3.93E-02
61	GO:0003677: DNA binding	3.97E-02
62	GO:0016301: kinase activity	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	4.81E-16
3	GO:0030076: light-harvesting complex	1.48E-15
4	GO:0010287: plastoglobule	7.19E-14
5	GO:0009579: thylakoid	2.08E-12
6	GO:0009534: chloroplast thylakoid	2.20E-12
7	GO:0009535: chloroplast thylakoid membrane	7.96E-12
8	GO:0009523: photosystem II	2.15E-09
9	GO:0009941: chloroplast envelope	9.46E-09
10	GO:0042651: thylakoid membrane	3.73E-06
11	GO:0009517: PSII associated light-harvesting complex II	3.86E-06
12	GO:0016020: membrane	1.78E-05
13	GO:0016021: integral component of membrane	3.51E-04
14	GO:0009533: chloroplast stromal thylakoid	1.05E-03
15	GO:0009538: photosystem I reaction center	1.21E-03
16	GO:0009507: chloroplast	1.52E-03
17	GO:0009707: chloroplast outer membrane	9.82E-03
18	GO:0005887: integral component of plasma membrane	1.51E-02
19	GO:0031966: mitochondrial membrane	1.63E-02
20	GO:0016607: nuclear speck	1.97E-02
21	GO:0005654: nucleoplasm	2.53E-02
22	GO:0005623: cell	2.63E-02
23	GO:0005774: vacuolar membrane	4.06E-02
24	GO:0005618: cell wall	4.78E-02
25	GO:0009505: plant-type cell wall	4.99E-02