Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0010378: temperature compensation of the circadian clock0.00E+00
3GO:0000380: alternative mRNA splicing, via spliceosome4.47E-06
4GO:0009645: response to low light intensity stimulus1.39E-05
5GO:0007623: circadian rhythm2.09E-05
6GO:0010218: response to far red light3.13E-05
7GO:0015812: gamma-aminobutyric acid transport4.88E-05
8GO:0032958: inositol phosphate biosynthetic process4.88E-05
9GO:1990641: response to iron ion starvation4.88E-05
10GO:0006101: citrate metabolic process1.20E-04
11GO:0051170: nuclear import1.20E-04
12GO:0009768: photosynthesis, light harvesting in photosystem I1.33E-04
13GO:0048511: rhythmic process1.48E-04
14GO:0010017: red or far-red light signaling pathway1.63E-04
15GO:0006598: polyamine catabolic process2.06E-04
16GO:0006020: inositol metabolic process3.01E-04
17GO:0010601: positive regulation of auxin biosynthetic process3.01E-04
18GO:0009409: response to cold3.31E-04
19GO:0030104: water homeostasis4.04E-04
20GO:0006646: phosphatidylethanolamine biosynthetic process4.04E-04
21GO:0010600: regulation of auxin biosynthetic process4.04E-04
22GO:0048578: positive regulation of long-day photoperiodism, flowering5.13E-04
23GO:0018298: protein-chromophore linkage5.80E-04
24GO:0000160: phosphorelay signal transduction system6.09E-04
25GO:0010043: response to zinc ion6.67E-04
26GO:0045087: innate immune response7.29E-04
27GO:0009861: jasmonic acid and ethylene-dependent systemic resistance7.50E-04
28GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.50E-04
29GO:0010161: red light signaling pathway8.75E-04
30GO:0048437: floral organ development8.75E-04
31GO:0009769: photosynthesis, light harvesting in photosystem II8.75E-04
32GO:0010114: response to red light9.27E-04
33GO:0009644: response to high light intensity9.98E-04
34GO:0008643: carbohydrate transport9.98E-04
35GO:0009704: de-etiolation1.01E-03
36GO:0032508: DNA duplex unwinding1.01E-03
37GO:0006102: isocitrate metabolic process1.01E-03
38GO:0010928: regulation of auxin mediated signaling pathway1.01E-03
39GO:0010099: regulation of photomorphogenesis1.14E-03
40GO:0009827: plant-type cell wall modification1.14E-03
41GO:0009585: red, far-red light phototransduction1.23E-03
42GO:0090333: regulation of stomatal closure1.28E-03
43GO:0048354: mucilage biosynthetic process involved in seed coat development1.43E-03
44GO:0055062: phosphate ion homeostasis1.59E-03
45GO:0009641: shade avoidance1.59E-03
46GO:0009718: anthocyanin-containing compound biosynthetic process2.08E-03
47GO:0009266: response to temperature stimulus2.26E-03
48GO:0006406: mRNA export from nucleus2.81E-03
49GO:0016575: histone deacetylation3.01E-03
50GO:0003333: amino acid transmembrane transport3.20E-03
51GO:0009269: response to desiccation3.20E-03
52GO:0071215: cellular response to abscisic acid stimulus3.61E-03
53GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.04E-03
54GO:0010501: RNA secondary structure unwinding4.26E-03
55GO:0042752: regulation of circadian rhythm4.71E-03
56GO:0006970: response to osmotic stress4.90E-03
57GO:0008654: phospholipid biosynthetic process4.94E-03
58GO:0009556: microsporogenesis4.94E-03
59GO:0080167: response to karrikin5.63E-03
60GO:1901657: glycosyl compound metabolic process5.66E-03
61GO:0015979: photosynthesis6.43E-03
62GO:0045892: negative regulation of transcription, DNA-templated6.85E-03
63GO:0009651: response to salt stress6.86E-03
64GO:0006355: regulation of transcription, DNA-templated6.93E-03
65GO:0010029: regulation of seed germination6.94E-03
66GO:0015995: chlorophyll biosynthetic process7.48E-03
67GO:0009817: defense response to fungus, incompatible interaction8.03E-03
68GO:0010119: regulation of stomatal movement8.88E-03
69GO:0009637: response to blue light9.47E-03
70GO:0006099: tricarboxylic acid cycle9.77E-03
71GO:0042542: response to hydrogen peroxide1.10E-02
72GO:0009640: photomorphogenesis1.13E-02
73GO:0006812: cation transport1.33E-02
74GO:0009735: response to cytokinin1.35E-02
75GO:0009738: abscisic acid-activated signaling pathway1.43E-02
76GO:0006857: oligopeptide transport1.47E-02
77GO:0009416: response to light stimulus1.48E-02
78GO:0009909: regulation of flower development1.50E-02
79GO:0006351: transcription, DNA-templated1.53E-02
80GO:0009737: response to abscisic acid1.54E-02
81GO:0035556: intracellular signal transduction1.56E-02
82GO:0009553: embryo sac development1.76E-02
83GO:0055085: transmembrane transport1.88E-02
84GO:0006457: protein folding1.92E-02
85GO:0010228: vegetative to reproductive phase transition of meristem2.73E-02
86GO:0009739: response to gibberellin2.87E-02
87GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.87E-02
88GO:0009414: response to water deprivation2.93E-02
89GO:0009617: response to bacterium3.00E-02
90GO:0009658: chloroplast organization3.61E-02
91GO:0010200: response to chitin4.31E-02
92GO:0044550: secondary metabolite biosynthetic process4.47E-02
93GO:0005975: carbohydrate metabolic process4.54E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
3GO:0047668: amygdalin beta-glucosidase activity0.00E+00
4GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
5GO:0004567: beta-mannosidase activity0.00E+00
6GO:0015185: gamma-aminobutyric acid transmembrane transporter activity4.88E-05
7GO:0033857: diphosphoinositol-pentakisphosphate kinase activity4.88E-05
8GO:0000829: inositol heptakisphosphate kinase activity4.88E-05
9GO:0080079: cellobiose glucosidase activity4.88E-05
10GO:0000828: inositol hexakisphosphate kinase activity4.88E-05
11GO:0031409: pigment binding1.07E-04
12GO:0015180: L-alanine transmembrane transporter activity1.20E-04
13GO:0004609: phosphatidylserine decarboxylase activity1.20E-04
14GO:0003994: aconitate hydratase activity1.20E-04
15GO:0046592: polyamine oxidase activity2.06E-04
16GO:0015189: L-lysine transmembrane transporter activity3.01E-04
17GO:0048027: mRNA 5'-UTR binding3.01E-04
18GO:0015181: arginine transmembrane transporter activity3.01E-04
19GO:0000156: phosphorelay response regulator activity3.54E-04
20GO:0005313: L-glutamate transmembrane transporter activity4.04E-04
21GO:0016168: chlorophyll binding4.74E-04
22GO:0004629: phospholipase C activity6.29E-04
23GO:0015562: efflux transmembrane transporter activity6.29E-04
24GO:0004435: phosphatidylinositol phospholipase C activity7.50E-04
25GO:0008270: zinc ion binding7.84E-04
26GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.14E-03
27GO:0000989: transcription factor activity, transcription factor binding1.28E-03
28GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.28E-03
29GO:0047372: acylglycerol lipase activity1.75E-03
30GO:0004022: alcohol dehydrogenase (NAD) activity2.08E-03
31GO:0004565: beta-galactosidase activity2.08E-03
32GO:0008131: primary amine oxidase activity2.26E-03
33GO:0004407: histone deacetylase activity2.81E-03
34GO:0015297: antiporter activity2.82E-03
35GO:0008324: cation transmembrane transporter activity3.01E-03
36GO:0102483: scopolin beta-glucosidase activity7.48E-03
37GO:0003697: single-stranded DNA binding9.47E-03
38GO:0008422: beta-glucosidase activity1.01E-02
39GO:0051539: 4 iron, 4 sulfur cluster binding1.04E-02
40GO:0003690: double-stranded DNA binding1.43E-02
41GO:0015171: amino acid transmembrane transporter activity1.50E-02
42GO:0016874: ligase activity1.72E-02
43GO:0022857: transmembrane transporter activity1.72E-02
44GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.95E-02
45GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.14E-02
46GO:0005351: sugar:proton symporter activity2.60E-02
47GO:0005215: transporter activity3.32E-02
48GO:0008168: methyltransferase activity3.52E-02
49GO:0004497: monooxygenase activity4.21E-02
50GO:0061630: ubiquitin protein ligase activity4.36E-02
51GO:0003729: mRNA binding4.45E-02
52GO:0004871: signal transducer activity4.94E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex9.42E-05
2GO:0009522: photosystem I2.70E-04
3GO:0009517: PSII associated light-harvesting complex II4.04E-04
4GO:0005777: peroxisome4.68E-04
5GO:0016021: integral component of membrane1.67E-03
6GO:0010287: plastoglobule2.04E-03
7GO:0009523: photosystem II4.94E-03
8GO:0016020: membrane5.30E-03
9GO:0048046: apoplast7.75E-03
10GO:0005618: cell wall8.83E-03
11GO:0031966: mitochondrial membrane1.33E-02
12GO:0016607: nuclear speck1.61E-02
13GO:0009579: thylakoid1.77E-02
14GO:0009534: chloroplast thylakoid1.79E-02
15GO:0005654: nucleoplasm2.06E-02
16GO:0005623: cell2.14E-02
17GO:0009505: plant-type cell wall3.75E-02
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Gene type



Gene DE type