GO Enrichment Analysis of Co-expressed Genes with
AT3G47070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 3 | GO:0009773: photosynthetic electron transport in photosystem I | 3.48E-06 |
| 4 | GO:0010196: nonphotochemical quenching | 5.19E-05 |
| 5 | GO:0010027: thylakoid membrane organization | 9.55E-05 |
| 6 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.12E-04 |
| 7 | GO:0051775: response to redox state | 1.12E-04 |
| 8 | GO:0071277: cellular response to calcium ion | 1.12E-04 |
| 9 | GO:0070509: calcium ion import | 1.12E-04 |
| 10 | GO:0007263: nitric oxide mediated signal transduction | 1.12E-04 |
| 11 | GO:0033481: galacturonate biosynthetic process | 1.12E-04 |
| 12 | GO:1902458: positive regulation of stomatal opening | 1.12E-04 |
| 13 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.61E-04 |
| 14 | GO:0010289: homogalacturonan biosynthetic process | 2.61E-04 |
| 15 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.61E-04 |
| 16 | GO:0015786: UDP-glucose transport | 2.61E-04 |
| 17 | GO:0097054: L-glutamate biosynthetic process | 2.61E-04 |
| 18 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.61E-04 |
| 19 | GO:0010207: photosystem II assembly | 2.68E-04 |
| 20 | GO:0007017: microtubule-based process | 4.13E-04 |
| 21 | GO:0006000: fructose metabolic process | 4.32E-04 |
| 22 | GO:0090391: granum assembly | 4.32E-04 |
| 23 | GO:0015783: GDP-fucose transport | 4.32E-04 |
| 24 | GO:0015979: photosynthesis | 5.79E-04 |
| 25 | GO:0006107: oxaloacetate metabolic process | 6.19E-04 |
| 26 | GO:0072334: UDP-galactose transmembrane transport | 6.19E-04 |
| 27 | GO:0042989: sequestering of actin monomers | 6.19E-04 |
| 28 | GO:0006537: glutamate biosynthetic process | 6.19E-04 |
| 29 | GO:0016556: mRNA modification | 6.19E-04 |
| 30 | GO:0042391: regulation of membrane potential | 6.82E-04 |
| 31 | GO:0006109: regulation of carbohydrate metabolic process | 8.23E-04 |
| 32 | GO:0031122: cytoplasmic microtubule organization | 8.23E-04 |
| 33 | GO:0006734: NADH metabolic process | 8.23E-04 |
| 34 | GO:0019676: ammonia assimilation cycle | 8.23E-04 |
| 35 | GO:0030041: actin filament polymerization | 1.04E-03 |
| 36 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.04E-03 |
| 37 | GO:0071805: potassium ion transmembrane transport | 1.14E-03 |
| 38 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.27E-03 |
| 39 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.27E-03 |
| 40 | GO:0009643: photosynthetic acclimation | 1.27E-03 |
| 41 | GO:0010405: arabinogalactan protein metabolic process | 1.27E-03 |
| 42 | GO:0042549: photosystem II stabilization | 1.27E-03 |
| 43 | GO:0071555: cell wall organization | 1.39E-03 |
| 44 | GO:0010019: chloroplast-nucleus signaling pathway | 1.52E-03 |
| 45 | GO:0050829: defense response to Gram-negative bacterium | 1.78E-03 |
| 46 | GO:0009645: response to low light intensity stimulus | 1.78E-03 |
| 47 | GO:0051510: regulation of unidimensional cell growth | 1.78E-03 |
| 48 | GO:0007155: cell adhesion | 2.06E-03 |
| 49 | GO:0008610: lipid biosynthetic process | 2.06E-03 |
| 50 | GO:0009642: response to light intensity | 2.06E-03 |
| 51 | GO:0009704: de-etiolation | 2.06E-03 |
| 52 | GO:2000070: regulation of response to water deprivation | 2.06E-03 |
| 53 | GO:0016559: peroxisome fission | 2.06E-03 |
| 54 | GO:0034599: cellular response to oxidative stress | 2.18E-03 |
| 55 | GO:0006002: fructose 6-phosphate metabolic process | 2.35E-03 |
| 56 | GO:0015996: chlorophyll catabolic process | 2.35E-03 |
| 57 | GO:0007186: G-protein coupled receptor signaling pathway | 2.35E-03 |
| 58 | GO:0017004: cytochrome complex assembly | 2.35E-03 |
| 59 | GO:0034765: regulation of ion transmembrane transport | 2.66E-03 |
| 60 | GO:0090333: regulation of stomatal closure | 2.66E-03 |
| 61 | GO:0000373: Group II intron splicing | 2.66E-03 |
| 62 | GO:0019538: protein metabolic process | 3.30E-03 |
| 63 | GO:0045036: protein targeting to chloroplast | 3.30E-03 |
| 64 | GO:0043085: positive regulation of catalytic activity | 3.65E-03 |
| 65 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.65E-03 |
| 66 | GO:0005983: starch catabolic process | 4.00E-03 |
| 67 | GO:0045037: protein import into chloroplast stroma | 4.00E-03 |
| 68 | GO:0055114: oxidation-reduction process | 4.28E-03 |
| 69 | GO:0009767: photosynthetic electron transport chain | 4.36E-03 |
| 70 | GO:0005986: sucrose biosynthetic process | 4.36E-03 |
| 71 | GO:0006108: malate metabolic process | 4.36E-03 |
| 72 | GO:0006094: gluconeogenesis | 4.36E-03 |
| 73 | GO:0010020: chloroplast fission | 4.74E-03 |
| 74 | GO:0019253: reductive pentose-phosphate cycle | 4.74E-03 |
| 75 | GO:0009225: nucleotide-sugar metabolic process | 5.13E-03 |
| 76 | GO:0005985: sucrose metabolic process | 5.13E-03 |
| 77 | GO:0090351: seedling development | 5.13E-03 |
| 78 | GO:0019762: glucosinolate catabolic process | 5.52E-03 |
| 79 | GO:0009833: plant-type primary cell wall biogenesis | 5.52E-03 |
| 80 | GO:0007010: cytoskeleton organization | 5.93E-03 |
| 81 | GO:0009695: jasmonic acid biosynthetic process | 6.35E-03 |
| 82 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.35E-03 |
| 83 | GO:0031408: oxylipin biosynthetic process | 6.78E-03 |
| 84 | GO:0016998: cell wall macromolecule catabolic process | 6.78E-03 |
| 85 | GO:0016226: iron-sulfur cluster assembly | 7.22E-03 |
| 86 | GO:0009294: DNA mediated transformation | 7.67E-03 |
| 87 | GO:0042335: cuticle development | 9.08E-03 |
| 88 | GO:0000413: protein peptidyl-prolyl isomerization | 9.08E-03 |
| 89 | GO:0009409: response to cold | 9.33E-03 |
| 90 | GO:0006662: glycerol ether metabolic process | 9.57E-03 |
| 91 | GO:0010182: sugar mediated signaling pathway | 9.57E-03 |
| 92 | GO:0009416: response to light stimulus | 9.76E-03 |
| 93 | GO:0006814: sodium ion transport | 1.01E-02 |
| 94 | GO:0009791: post-embryonic development | 1.06E-02 |
| 95 | GO:0019252: starch biosynthetic process | 1.06E-02 |
| 96 | GO:0005975: carbohydrate metabolic process | 1.11E-02 |
| 97 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.11E-02 |
| 98 | GO:0000302: response to reactive oxygen species | 1.11E-02 |
| 99 | GO:0019761: glucosinolate biosynthetic process | 1.16E-02 |
| 100 | GO:0010090: trichome morphogenesis | 1.22E-02 |
| 101 | GO:0009816: defense response to bacterium, incompatible interaction | 1.50E-02 |
| 102 | GO:0015995: chlorophyll biosynthetic process | 1.62E-02 |
| 103 | GO:0010411: xyloglucan metabolic process | 1.62E-02 |
| 104 | GO:0080167: response to karrikin | 1.69E-02 |
| 105 | GO:0018298: protein-chromophore linkage | 1.74E-02 |
| 106 | GO:0009407: toxin catabolic process | 1.86E-02 |
| 107 | GO:0009631: cold acclimation | 1.93E-02 |
| 108 | GO:0048527: lateral root development | 1.93E-02 |
| 109 | GO:0045454: cell redox homeostasis | 2.03E-02 |
| 110 | GO:0009853: photorespiration | 2.06E-02 |
| 111 | GO:0016051: carbohydrate biosynthetic process | 2.06E-02 |
| 112 | GO:0006099: tricarboxylic acid cycle | 2.12E-02 |
| 113 | GO:0006869: lipid transport | 2.23E-02 |
| 114 | GO:0009744: response to sucrose | 2.46E-02 |
| 115 | GO:0006629: lipid metabolic process | 2.51E-02 |
| 116 | GO:0042546: cell wall biogenesis | 2.53E-02 |
| 117 | GO:0009644: response to high light intensity | 2.60E-02 |
| 118 | GO:0009636: response to toxic substance | 2.67E-02 |
| 119 | GO:0006813: potassium ion transport | 3.04E-02 |
| 120 | GO:0006096: glycolytic process | 3.43E-02 |
| 121 | GO:0043086: negative regulation of catalytic activity | 3.43E-02 |
| 122 | GO:0009626: plant-type hypersensitive response | 3.59E-02 |
| 123 | GO:0042545: cell wall modification | 3.83E-02 |
| 124 | GO:0006810: transport | 3.84E-02 |
| 125 | GO:0009624: response to nematode | 3.91E-02 |
| 126 | GO:0009845: seed germination | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005222: intracellular cAMP activated cation channel activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 6 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 7 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 8 | GO:0005242: inward rectifier potassium channel activity | 3.84E-05 |
| 9 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 1.12E-04 |
| 10 | GO:0050308: sugar-phosphatase activity | 1.12E-04 |
| 11 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.12E-04 |
| 12 | GO:0008568: microtubule-severing ATPase activity | 1.12E-04 |
| 13 | GO:0004321: fatty-acyl-CoA synthase activity | 1.12E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.12E-04 |
| 15 | GO:0005080: protein kinase C binding | 1.12E-04 |
| 16 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.12E-04 |
| 17 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.12E-04 |
| 18 | GO:0030941: chloroplast targeting sequence binding | 1.12E-04 |
| 19 | GO:0005221: intracellular cyclic nucleotide activated cation channel activity | 1.12E-04 |
| 20 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.61E-04 |
| 21 | GO:0008805: carbon-monoxide oxygenase activity | 2.61E-04 |
| 22 | GO:0008967: phosphoglycolate phosphatase activity | 2.61E-04 |
| 23 | GO:0004857: enzyme inhibitor activity | 3.73E-04 |
| 24 | GO:0005457: GDP-fucose transmembrane transporter activity | 4.32E-04 |
| 25 | GO:0005460: UDP-glucose transmembrane transporter activity | 6.19E-04 |
| 26 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.19E-04 |
| 27 | GO:0008508: bile acid:sodium symporter activity | 6.19E-04 |
| 28 | GO:0030551: cyclic nucleotide binding | 6.82E-04 |
| 29 | GO:0051861: glycolipid binding | 8.23E-04 |
| 30 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 8.23E-04 |
| 31 | GO:0080032: methyl jasmonate esterase activity | 8.23E-04 |
| 32 | GO:0009011: starch synthase activity | 8.23E-04 |
| 33 | GO:0050378: UDP-glucuronate 4-epimerase activity | 8.23E-04 |
| 34 | GO:0005459: UDP-galactose transmembrane transporter activity | 1.04E-03 |
| 35 | GO:0003785: actin monomer binding | 1.04E-03 |
| 36 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.04E-03 |
| 37 | GO:0080030: methyl indole-3-acetate esterase activity | 1.27E-03 |
| 38 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.27E-03 |
| 39 | GO:0004130: cytochrome-c peroxidase activity | 1.27E-03 |
| 40 | GO:0016688: L-ascorbate peroxidase activity | 1.27E-03 |
| 41 | GO:0016615: malate dehydrogenase activity | 1.27E-03 |
| 42 | GO:2001070: starch binding | 1.27E-03 |
| 43 | GO:0016168: chlorophyll binding | 1.35E-03 |
| 44 | GO:0051920: peroxiredoxin activity | 1.52E-03 |
| 45 | GO:0030060: L-malate dehydrogenase activity | 1.52E-03 |
| 46 | GO:0005261: cation channel activity | 1.52E-03 |
| 47 | GO:0051753: mannan synthase activity | 1.52E-03 |
| 48 | GO:0004620: phospholipase activity | 1.78E-03 |
| 49 | GO:0016209: antioxidant activity | 2.06E-03 |
| 50 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.66E-03 |
| 51 | GO:0016207: 4-coumarate-CoA ligase activity | 2.66E-03 |
| 52 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.66E-03 |
| 53 | GO:0008047: enzyme activator activity | 3.30E-03 |
| 54 | GO:0030234: enzyme regulator activity | 3.30E-03 |
| 55 | GO:0047372: acylglycerol lipase activity | 3.65E-03 |
| 56 | GO:0004565: beta-galactosidase activity | 4.36E-03 |
| 57 | GO:0031072: heat shock protein binding | 4.36E-03 |
| 58 | GO:0005262: calcium channel activity | 4.36E-03 |
| 59 | GO:0008131: primary amine oxidase activity | 4.74E-03 |
| 60 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 4.74E-03 |
| 61 | GO:0016874: ligase activity | 4.80E-03 |
| 62 | GO:0030553: cGMP binding | 5.13E-03 |
| 63 | GO:0030552: cAMP binding | 5.13E-03 |
| 64 | GO:0031409: pigment binding | 5.52E-03 |
| 65 | GO:0051536: iron-sulfur cluster binding | 5.93E-03 |
| 66 | GO:0043424: protein histidine kinase binding | 6.35E-03 |
| 67 | GO:0005216: ion channel activity | 6.35E-03 |
| 68 | GO:0015079: potassium ion transmembrane transporter activity | 6.35E-03 |
| 69 | GO:0019843: rRNA binding | 6.38E-03 |
| 70 | GO:0046872: metal ion binding | 7.10E-03 |
| 71 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 7.22E-03 |
| 72 | GO:0022891: substrate-specific transmembrane transporter activity | 7.67E-03 |
| 73 | GO:0047134: protein-disulfide reductase activity | 8.60E-03 |
| 74 | GO:0005249: voltage-gated potassium channel activity | 9.08E-03 |
| 75 | GO:0004791: thioredoxin-disulfide reductase activity | 1.01E-02 |
| 76 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.11E-02 |
| 77 | GO:0042802: identical protein binding | 1.12E-02 |
| 78 | GO:0016757: transferase activity, transferring glycosyl groups | 1.18E-02 |
| 79 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.22E-02 |
| 80 | GO:0016759: cellulose synthase activity | 1.27E-02 |
| 81 | GO:0005200: structural constituent of cytoskeleton | 1.33E-02 |
| 82 | GO:0051213: dioxygenase activity | 1.44E-02 |
| 83 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.62E-02 |
| 84 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.06E-02 |
| 85 | GO:0004364: glutathione transferase activity | 2.39E-02 |
| 86 | GO:0003924: GTPase activity | 2.51E-02 |
| 87 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.60E-02 |
| 88 | GO:0003824: catalytic activity | 2.68E-02 |
| 89 | GO:0009055: electron carrier activity | 2.69E-02 |
| 90 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.75E-02 |
| 91 | GO:0003777: microtubule motor activity | 3.27E-02 |
| 92 | GO:0045330: aspartyl esterase activity | 3.27E-02 |
| 93 | GO:0016491: oxidoreductase activity | 3.36E-02 |
| 94 | GO:0008289: lipid binding | 3.48E-02 |
| 95 | GO:0004650: polygalacturonase activity | 3.67E-02 |
| 96 | GO:0030599: pectinesterase activity | 3.75E-02 |
| 97 | GO:0022857: transmembrane transporter activity | 3.75E-02 |
| 98 | GO:0003779: actin binding | 3.83E-02 |
| 99 | GO:0051082: unfolded protein binding | 3.91E-02 |
| 100 | GO:0015035: protein disulfide oxidoreductase activity | 3.99E-02 |
| 101 | GO:0016758: transferase activity, transferring hexosyl groups | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.49E-22 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.26E-13 |
| 4 | GO:0009534: chloroplast thylakoid | 9.98E-12 |
| 5 | GO:0009570: chloroplast stroma | 1.14E-08 |
| 6 | GO:0009579: thylakoid | 6.26E-08 |
| 7 | GO:0009941: chloroplast envelope | 9.27E-07 |
| 8 | GO:0048046: apoplast | 7.99E-05 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.05E-04 |
| 10 | GO:0009782: photosystem I antenna complex | 1.12E-04 |
| 11 | GO:0009515: granal stacked thylakoid | 1.12E-04 |
| 12 | GO:0009707: chloroplast outer membrane | 1.41E-04 |
| 13 | GO:0016021: integral component of membrane | 3.84E-04 |
| 14 | GO:0009528: plastid inner membrane | 4.32E-04 |
| 15 | GO:0015630: microtubule cytoskeleton | 6.19E-04 |
| 16 | GO:0030286: dynein complex | 8.23E-04 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 8.23E-04 |
| 18 | GO:0009527: plastid outer membrane | 8.23E-04 |
| 19 | GO:0009512: cytochrome b6f complex | 1.04E-03 |
| 20 | GO:0010319: stromule | 1.14E-03 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 1.78E-03 |
| 22 | GO:0031359: integral component of chloroplast outer membrane | 1.78E-03 |
| 23 | GO:0046658: anchored component of plasma membrane | 1.80E-03 |
| 24 | GO:0000139: Golgi membrane | 2.37E-03 |
| 25 | GO:0005938: cell cortex | 4.36E-03 |
| 26 | GO:0030076: light-harvesting complex | 5.13E-03 |
| 27 | GO:0005875: microtubule associated complex | 5.52E-03 |
| 28 | GO:0009543: chloroplast thylakoid lumen | 6.38E-03 |
| 29 | GO:0009532: plastid stroma | 6.78E-03 |
| 30 | GO:0015629: actin cytoskeleton | 7.67E-03 |
| 31 | GO:0009505: plant-type cell wall | 8.30E-03 |
| 32 | GO:0009523: photosystem II | 1.06E-02 |
| 33 | GO:0032580: Golgi cisterna membrane | 1.27E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 1.44E-02 |
| 35 | GO:0005794: Golgi apparatus | 1.53E-02 |
| 36 | GO:0005618: cell wall | 1.54E-02 |
| 37 | GO:0015934: large ribosomal subunit | 1.93E-02 |
| 38 | GO:0031977: thylakoid lumen | 2.32E-02 |
| 39 | GO:0005856: cytoskeleton | 2.67E-02 |
| 40 | GO:0005887: integral component of plasma membrane | 3.40E-02 |
| 41 | GO:0016020: membrane | 4.13E-02 |
| 42 | GO:0010287: plastoglobule | 4.42E-02 |
| 43 | GO:0005623: cell | 4.68E-02 |