Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051290: protein heterotetramerization0.00E+00
2GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
3GO:0016048: detection of temperature stimulus0.00E+00
4GO:0009202: deoxyribonucleoside triphosphate biosynthetic process0.00E+00
5GO:0006260: DNA replication1.12E-08
6GO:0006275: regulation of DNA replication2.35E-08
7GO:0006342: chromatin silencing9.55E-08
8GO:0006268: DNA unwinding involved in DNA replication4.64E-07
9GO:0044030: regulation of DNA methylation1.18E-06
10GO:0006270: DNA replication initiation4.80E-06
11GO:0071158: positive regulation of cell cycle arrest2.00E-05
12GO:0045717: negative regulation of fatty acid biosynthetic process2.00E-05
13GO:0035066: positive regulation of histone acetylation3.67E-05
14GO:0042276: error-prone translesion synthesis3.67E-05
15GO:0070828: heterochromatin organization3.67E-05
16GO:0051085: chaperone mediated protein folding requiring cofactor5.65E-05
17GO:0035067: negative regulation of histone acetylation5.65E-05
18GO:0006986: response to unfolded protein5.65E-05
19GO:0008283: cell proliferation8.62E-05
20GO:0010468: regulation of gene expression3.67E-04
21GO:0009934: regulation of meristem structural organization5.02E-04
22GO:0007049: cell cycle5.27E-04
23GO:0042127: regulation of cell proliferation8.32E-04
24GO:0006281: DNA repair8.45E-04
25GO:0010182: sugar mediated signaling pathway9.64E-04
26GO:0007059: chromosome segregation1.01E-03
27GO:0006310: DNA recombination1.25E-03
28GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.45E-03
29GO:0009909: regulation of flower development3.03E-03
30GO:0051726: regulation of cell cycle3.73E-03
31GO:0046686: response to cadmium ion4.49E-03
32GO:0045944: positive regulation of transcription from RNA polymerase II promoter6.67E-03
33GO:0006970: response to osmotic stress7.41E-03
34GO:0048366: leaf development7.89E-03
35GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.37E-03
36GO:0045892: negative regulation of transcription, DNA-templated9.37E-03
37GO:0009908: flower development1.50E-02
38GO:0009416: response to light stimulus1.61E-02
39GO:0051301: cell division1.71E-02
40GO:0006414: translational elongation2.14E-02
41GO:0042742: defense response to bacterium2.67E-02
42GO:0009409: response to cold3.31E-02
RankGO TermAdjusted P value
1GO:0030337: DNA polymerase processivity factor activity0.00E+00
2GO:0003677: DNA binding1.53E-11
3GO:0046982: protein heterodimerization activity2.91E-07
4GO:0003678: DNA helicase activity1.51E-06
5GO:0008094: DNA-dependent ATPase activity9.46E-06
6GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor2.00E-05
7GO:0051087: chaperone binding6.61E-04
8GO:0005515: protein binding7.00E-04
9GO:0003713: transcription coactivator activity9.64E-04
10GO:0005524: ATP binding1.56E-03
11GO:0051082: unfolded protein binding3.59E-03
12GO:0004386: helicase activity3.81E-03
13GO:0008017: microtubule binding5.37E-03
14GO:0003682: chromatin binding7.32E-03
15GO:0004871: signal transducer activity9.58E-03
16GO:0005507: copper ion binding2.07E-02
17GO:0005516: calmodulin binding2.16E-02
18GO:0004842: ubiquitin-protein transferase activity3.36E-02
19GO:0004672: protein kinase activity3.51E-02
20GO:0003735: structural constituent of ribosome4.36E-02
RankGO TermAdjusted P value
1GO:0000940: condensed chromosome outer kinetochore0.00E+00
2GO:0005721: pericentric heterochromatin0.00E+00
3GO:0000790: nuclear chromatin4.60E-13
4GO:0000786: nucleosome3.59E-09
5GO:0042555: MCM complex1.14E-07
6GO:0000347: THO complex6.56E-07
7GO:0031436: BRCA1-BARD1 complex7.41E-06
8GO:0005971: ribonucleoside-diphosphate reductase complex7.41E-06
9GO:0000792: heterochromatin2.00E-05
10GO:0070531: BRCA1-A complex3.67E-05
11GO:0005876: spindle microtubule3.19E-04
12GO:0005634: nucleus3.43E-04
13GO:0005730: nucleolus5.82E-04
14GO:0005759: mitochondrial matrix4.88E-03
15GO:0022626: cytosolic ribosome1.56E-02
16GO:0009579: thylakoid1.83E-02
17GO:0005622: intracellular2.43E-02
18GO:0005840: ribosome2.76E-02
19GO:0009536: plastid3.08E-02
20GO:0009506: plasmodesma3.83E-02
21GO:0009535: chloroplast thylakoid membrane4.74E-02
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Gene type



Gene DE type