Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006223: uracil salvage0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0032544: plastid translation4.28E-08
9GO:0009658: chloroplast organization1.43E-07
10GO:0010027: thylakoid membrane organization7.26E-07
11GO:0048564: photosystem I assembly3.20E-06
12GO:0010236: plastoquinone biosynthetic process5.09E-05
13GO:0015979: photosynthesis6.81E-05
14GO:0010190: cytochrome b6f complex assembly7.50E-05
15GO:0042255: ribosome assembly1.76E-04
16GO:0006353: DNA-templated transcription, termination1.76E-04
17GO:1904966: positive regulation of vitamin E biosynthetic process2.09E-04
18GO:1904964: positive regulation of phytol biosynthetic process2.09E-04
19GO:0033481: galacturonate biosynthetic process2.09E-04
20GO:0042371: vitamin K biosynthetic process2.09E-04
21GO:0043686: co-translational protein modification2.09E-04
22GO:0071588: hydrogen peroxide mediated signaling pathway2.09E-04
23GO:0032502: developmental process2.12E-04
24GO:0009657: plastid organization2.19E-04
25GO:0071482: cellular response to light stimulus2.19E-04
26GO:0009073: aromatic amino acid family biosynthetic process4.29E-04
27GO:0043085: positive regulation of catalytic activity4.29E-04
28GO:0006352: DNA-templated transcription, initiation4.29E-04
29GO:0010086: embryonic root morphogenesis4.66E-04
30GO:1902326: positive regulation of chlorophyll biosynthetic process4.66E-04
31GO:0009662: etioplast organization4.66E-04
32GO:0080183: response to photooxidative stress4.66E-04
33GO:0006729: tetrahydrobiopterin biosynthetic process4.66E-04
34GO:0006633: fatty acid biosynthetic process5.72E-04
35GO:0010581: regulation of starch biosynthetic process7.59E-04
36GO:0090391: granum assembly7.59E-04
37GO:0009062: fatty acid catabolic process7.59E-04
38GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition7.59E-04
39GO:0051604: protein maturation7.59E-04
40GO:0010253: UDP-rhamnose biosynthetic process7.59E-04
41GO:0009116: nucleoside metabolic process8.63E-04
42GO:0071329: cellular response to sucrose stimulus1.08E-03
43GO:0006424: glutamyl-tRNA aminoacylation1.08E-03
44GO:0010088: phloem development1.08E-03
45GO:0016556: mRNA modification1.08E-03
46GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.08E-03
47GO:2001141: regulation of RNA biosynthetic process1.08E-03
48GO:0007231: osmosensory signaling pathway1.08E-03
49GO:0033500: carbohydrate homeostasis1.44E-03
50GO:0044206: UMP salvage1.44E-03
51GO:0071483: cellular response to blue light1.44E-03
52GO:0009741: response to brassinosteroid1.68E-03
53GO:0032543: mitochondrial translation1.83E-03
54GO:0043097: pyrimidine nucleoside salvage1.83E-03
55GO:0045038: protein import into chloroplast thylakoid membrane1.83E-03
56GO:0031365: N-terminal protein amino acid modification1.83E-03
57GO:0006461: protein complex assembly1.83E-03
58GO:0006655: phosphatidylglycerol biosynthetic process2.26E-03
59GO:0048831: regulation of shoot system development2.26E-03
60GO:0006206: pyrimidine nucleobase metabolic process2.26E-03
61GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.26E-03
62GO:0042549: photosystem II stabilization2.26E-03
63GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.26E-03
64GO:0006555: methionine metabolic process2.26E-03
65GO:0010358: leaf shaping2.26E-03
66GO:0042372: phylloquinone biosynthetic process2.71E-03
67GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.71E-03
68GO:2000033: regulation of seed dormancy process2.71E-03
69GO:1901259: chloroplast rRNA processing2.71E-03
70GO:0048509: regulation of meristem development2.71E-03
71GO:0030488: tRNA methylation2.71E-03
72GO:0010189: vitamin E biosynthetic process2.71E-03
73GO:0010019: chloroplast-nucleus signaling pathway2.71E-03
74GO:0009955: adaxial/abaxial pattern specification2.71E-03
75GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.20E-03
76GO:0010196: nonphotochemical quenching3.20E-03
77GO:0008272: sulfate transport3.20E-03
78GO:0050829: defense response to Gram-negative bacterium3.20E-03
79GO:0006826: iron ion transport3.20E-03
80GO:0006400: tRNA modification3.20E-03
81GO:0009772: photosynthetic electron transport in photosystem II3.20E-03
82GO:0015995: chlorophyll biosynthetic process3.50E-03
83GO:0009938: negative regulation of gibberellic acid mediated signaling pathway3.71E-03
84GO:0006875: cellular metal ion homeostasis3.71E-03
85GO:0045010: actin nucleation3.71E-03
86GO:0045292: mRNA cis splicing, via spliceosome3.71E-03
87GO:0008610: lipid biosynthetic process3.71E-03
88GO:0018298: protein-chromophore linkage3.88E-03
89GO:0000160: phosphorelay signal transduction system4.08E-03
90GO:0019430: removal of superoxide radicals4.24E-03
91GO:0000373: Group II intron splicing4.80E-03
92GO:0000902: cell morphogenesis4.80E-03
93GO:0009867: jasmonic acid mediated signaling pathway4.91E-03
94GO:0034599: cellular response to oxidative stress5.13E-03
95GO:0042761: very long-chain fatty acid biosynthetic process5.38E-03
96GO:0010380: regulation of chlorophyll biosynthetic process5.38E-03
97GO:0035999: tetrahydrofolate interconversion5.38E-03
98GO:0045036: protein targeting to chloroplast5.99E-03
99GO:0010192: mucilage biosynthetic process5.99E-03
100GO:0009773: photosynthetic electron transport in photosystem I6.62E-03
101GO:0006415: translational termination6.62E-03
102GO:0006412: translation6.87E-03
103GO:0016024: CDP-diacylglycerol biosynthetic process7.28E-03
104GO:0045037: protein import into chloroplast stroma7.28E-03
105GO:0042538: hyperosmotic salinity response7.95E-03
106GO:0030036: actin cytoskeleton organization7.96E-03
107GO:0009736: cytokinin-activated signaling pathway8.54E-03
108GO:0010207: photosystem II assembly8.66E-03
109GO:0010039: response to iron ion9.37E-03
110GO:0090351: seedling development9.37E-03
111GO:0009225: nucleotide-sugar metabolic process9.37E-03
112GO:0009793: embryo development ending in seed dormancy9.46E-03
113GO:0010025: wax biosynthetic process1.01E-02
114GO:0006096: glycolytic process1.01E-02
115GO:0009863: salicylic acid mediated signaling pathway1.09E-02
116GO:0007010: cytoskeleton organization1.09E-02
117GO:0010187: negative regulation of seed germination1.09E-02
118GO:2000377: regulation of reactive oxygen species metabolic process1.09E-02
119GO:0006457: protein folding1.13E-02
120GO:0009695: jasmonic acid biosynthetic process1.17E-02
121GO:0006418: tRNA aminoacylation for protein translation1.17E-02
122GO:0031408: oxylipin biosynthetic process1.25E-02
123GO:0055114: oxidation-reduction process1.31E-02
124GO:0006730: one-carbon metabolic process1.33E-02
125GO:0046686: response to cadmium ion1.40E-02
126GO:0006629: lipid metabolic process1.43E-02
127GO:0010214: seed coat development1.50E-02
128GO:0016117: carotenoid biosynthetic process1.59E-02
129GO:0042335: cuticle development1.68E-02
130GO:0008033: tRNA processing1.68E-02
131GO:0000413: protein peptidyl-prolyl isomerization1.68E-02
132GO:0042744: hydrogen peroxide catabolic process1.74E-02
133GO:0006662: glycerol ether metabolic process1.77E-02
134GO:0010268: brassinosteroid homeostasis1.77E-02
135GO:0009790: embryo development1.78E-02
136GO:0007018: microtubule-based movement1.86E-02
137GO:0008654: phospholipid biosynthetic process1.96E-02
138GO:0016036: cellular response to phosphate starvation1.97E-02
139GO:0000302: response to reactive oxygen species2.06E-02
140GO:0006635: fatty acid beta-oxidation2.06E-02
141GO:0016132: brassinosteroid biosynthetic process2.06E-02
142GO:0016032: viral process2.15E-02
143GO:0071555: cell wall organization2.20E-02
144GO:0010090: trichome morphogenesis2.25E-02
145GO:0009739: response to gibberellin2.36E-02
146GO:0016125: sterol metabolic process2.36E-02
147GO:0071805: potassium ion transmembrane transport2.46E-02
148GO:0010286: heat acclimation2.46E-02
149GO:0008380: RNA splicing2.52E-02
150GO:0009735: response to cytokinin2.63E-02
151GO:0010029: regulation of seed germination2.78E-02
152GO:0016311: dephosphorylation3.11E-02
153GO:0009817: defense response to fungus, incompatible interaction3.23E-02
154GO:0048481: plant ovule development3.23E-02
155GO:0009407: toxin catabolic process3.46E-02
156GO:0009631: cold acclimation3.58E-02
157GO:0009723: response to ethylene3.78E-02
158GO:0009637: response to blue light3.82E-02
159GO:0080167: response to karrikin4.04E-02
160GO:0030001: metal ion transport4.19E-02
161GO:0006839: mitochondrial transport4.19E-02
162GO:0010114: response to red light4.57E-02
163GO:0051707: response to other organism4.57E-02
164GO:0045454: cell redox homeostasis4.83E-02
165GO:0009636: response to toxic substance4.97E-02
RankGO TermAdjusted P value
1GO:0019955: cytokine binding0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
8GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
9GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0046608: carotenoid isomerase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
14GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
15GO:0019843: rRNA binding2.39E-10
16GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity2.06E-06
17GO:0001053: plastid sigma factor activity3.17E-05
18GO:0016987: sigma factor activity3.17E-05
19GO:0019899: enzyme binding1.37E-04
20GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity2.09E-04
21GO:0042586: peptide deformylase activity2.09E-04
22GO:0004321: fatty-acyl-CoA synthase activity2.09E-04
23GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.09E-04
24GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.09E-04
25GO:0019210: kinase inhibitor activity2.09E-04
26GO:0005080: protein kinase C binding2.09E-04
27GO:0015088: copper uptake transmembrane transporter activity2.09E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.09E-04
29GO:0010012: steroid 22-alpha hydroxylase activity2.09E-04
30GO:0008809: carnitine racemase activity2.09E-04
31GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity2.09E-04
32GO:0004560: alpha-L-fucosidase activity2.09E-04
33GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.09E-04
34GO:0008047: enzyme activator activity3.71E-04
35GO:0016630: protochlorophyllide reductase activity4.66E-04
36GO:0050377: UDP-glucose 4,6-dehydratase activity4.66E-04
37GO:0009884: cytokinin receptor activity4.66E-04
38GO:0008460: dTDP-glucose 4,6-dehydratase activity4.66E-04
39GO:0010280: UDP-L-rhamnose synthase activity4.66E-04
40GO:0031072: heat shock protein binding5.58E-04
41GO:0003913: DNA photolyase activity7.59E-04
42GO:0002161: aminoacyl-tRNA editing activity7.59E-04
43GO:0004148: dihydrolipoyl dehydrogenase activity7.59E-04
44GO:0005034: osmosensor activity7.59E-04
45GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity7.59E-04
46GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.02E-03
47GO:0004176: ATP-dependent peptidase activity1.04E-03
48GO:0016149: translation release factor activity, codon specific1.08E-03
49GO:0004165: dodecenoyl-CoA delta-isomerase activity1.08E-03
50GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.08E-03
51GO:0003727: single-stranded RNA binding1.34E-03
52GO:0043495: protein anchor1.44E-03
53GO:0050378: UDP-glucuronate 4-epimerase activity1.44E-03
54GO:0004659: prenyltransferase activity1.44E-03
55GO:0004845: uracil phosphoribosyltransferase activity1.44E-03
56GO:0016836: hydro-lyase activity1.44E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.44E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.44E-03
59GO:0004791: thioredoxin-disulfide reductase activity1.81E-03
60GO:0003959: NADPH dehydrogenase activity1.83E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor1.83E-03
62GO:0051082: unfolded protein binding1.90E-03
63GO:0003824: catalytic activity2.19E-03
64GO:0004130: cytochrome-c peroxidase activity2.26E-03
65GO:0016688: L-ascorbate peroxidase activity2.26E-03
66GO:0004605: phosphatidate cytidylyltransferase activity2.26E-03
67GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.35E-03
68GO:0008237: metallopeptidase activity2.66E-03
69GO:0004017: adenylate kinase activity2.71E-03
70GO:0004849: uridine kinase activity2.71E-03
71GO:0003723: RNA binding2.84E-03
72GO:0016491: oxidoreductase activity3.14E-03
73GO:0004620: phospholipase activity3.20E-03
74GO:0016831: carboxy-lyase activity3.20E-03
75GO:0102425: myricetin 3-O-glucosyltransferase activity3.20E-03
76GO:0102360: daphnetin 3-O-glucosyltransferase activity3.20E-03
77GO:0009881: photoreceptor activity3.20E-03
78GO:0047893: flavonol 3-O-glucosyltransferase activity3.71E-03
79GO:0004033: aldo-keto reductase (NADP) activity3.71E-03
80GO:0008312: 7S RNA binding3.71E-03
81GO:0000989: transcription factor activity, transcription factor binding4.80E-03
82GO:0003747: translation release factor activity4.80E-03
83GO:0016207: 4-coumarate-CoA ligase activity4.80E-03
84GO:0005381: iron ion transmembrane transporter activity5.38E-03
85GO:0004673: protein histidine kinase activity5.99E-03
86GO:0047372: acylglycerol lipase activity6.62E-03
87GO:0043621: protein self-association6.85E-03
88GO:0003735: structural constituent of ribosome7.05E-03
89GO:0000049: tRNA binding7.28E-03
90GO:0008081: phosphoric diester hydrolase activity7.96E-03
91GO:0000155: phosphorelay sensor kinase activity7.96E-03
92GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.54E-03
93GO:0008266: poly(U) RNA binding8.66E-03
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.66E-03
95GO:0003690: double-stranded DNA binding8.83E-03
96GO:0051536: iron-sulfur cluster binding1.09E-02
97GO:0005528: FK506 binding1.09E-02
98GO:0015079: potassium ion transmembrane transporter activity1.17E-02
99GO:0043424: protein histidine kinase binding1.17E-02
100GO:0003729: mRNA binding1.29E-02
101GO:0022891: substrate-specific transmembrane transporter activity1.41E-02
102GO:0047134: protein-disulfide reductase activity1.59E-02
103GO:0004812: aminoacyl-tRNA ligase activity1.59E-02
104GO:0005525: GTP binding1.62E-02
105GO:0019901: protein kinase binding1.96E-02
106GO:0008017: microtubule binding2.21E-02
107GO:0000156: phosphorelay response regulator activity2.25E-02
108GO:0016759: cellulose synthase activity2.36E-02
109GO:0016168: chlorophyll binding2.78E-02
110GO:0004721: phosphoprotein phosphatase activity3.00E-02
111GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.11E-02
112GO:0008236: serine-type peptidase activity3.11E-02
113GO:0008168: methyltransferase activity3.15E-02
114GO:0000287: magnesium ion binding3.21E-02
115GO:0016740: transferase activity3.76E-02
116GO:0003746: translation elongation factor activity3.82E-02
117GO:0003993: acid phosphatase activity3.94E-02
118GO:0051539: 4 iron, 4 sulfur cluster binding4.19E-02
119GO:0004364: glutathione transferase activity4.45E-02
120GO:0052689: carboxylic ester hydrolase activity4.46E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast5.77E-49
3GO:0009570: chloroplast stroma2.76E-21
4GO:0009941: chloroplast envelope7.87E-20
5GO:0009535: chloroplast thylakoid membrane8.88E-18
6GO:0009579: thylakoid2.12E-14
7GO:0031977: thylakoid lumen4.78E-09
8GO:0009543: chloroplast thylakoid lumen6.66E-09
9GO:0009534: chloroplast thylakoid2.20E-08
10GO:0009536: plastid8.18E-07
11GO:0009654: photosystem II oxygen evolving complex5.85E-05
12GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.09E-04
13GO:0009515: granal stacked thylakoid2.09E-04
14GO:0009547: plastid ribosome2.09E-04
15GO:0009706: chloroplast inner membrane2.80E-04
16GO:0080085: signal recognition particle, chloroplast targeting4.66E-04
17GO:0005840: ribosome5.52E-04
18GO:0000312: plastid small ribosomal subunit6.29E-04
19GO:0030095: chloroplast photosystem II6.29E-04
20GO:0042651: thylakoid membrane9.49E-04
21GO:0009526: plastid envelope1.44E-03
22GO:0031897: Tic complex1.44E-03
23GO:0031969: chloroplast membrane1.76E-03
24GO:0055035: plastid thylakoid membrane1.83E-03
25GO:0009523: photosystem II1.94E-03
26GO:0019898: extrinsic component of membrane1.94E-03
27GO:0031209: SCAR complex2.26E-03
28GO:0009533: chloroplast stromal thylakoid3.20E-03
29GO:0009539: photosystem II reaction center4.24E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.24E-03
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.80E-03
32GO:0005763: mitochondrial small ribosomal subunit4.80E-03
33GO:0046658: anchored component of plasma membrane5.42E-03
34GO:0000311: plastid large ribosomal subunit7.28E-03
35GO:0009508: plastid chromosome7.96E-03
36GO:0005578: proteinaceous extracellular matrix7.96E-03
37GO:0015935: small ribosomal subunit1.25E-02
38GO:0009532: plastid stroma1.25E-02
39GO:0005871: kinesin complex1.59E-02
40GO:0043231: intracellular membrane-bounded organelle1.62E-02
41GO:0032580: Golgi cisterna membrane2.36E-02
42GO:0009295: nucleoid2.46E-02
43GO:0005618: cell wall2.64E-02
44GO:0022627: cytosolic small ribosomal subunit2.80E-02
45GO:0005874: microtubule3.91E-02
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Gene type



Gene DE type