GO Enrichment Analysis of Co-expressed Genes with
AT3G46620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 2 | GO:0072722: response to amitrole | 0.00E+00 |
| 3 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 4 | GO:0006858: extracellular transport | 0.00E+00 |
| 5 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 6 | GO:0006014: D-ribose metabolic process | 4.18E-05 |
| 7 | GO:0046686: response to cadmium ion | 9.27E-05 |
| 8 | GO:0042964: thioredoxin reduction | 1.46E-04 |
| 9 | GO:0046244: salicylic acid catabolic process | 1.46E-04 |
| 10 | GO:0044376: RNA polymerase II complex import to nucleus | 1.46E-04 |
| 11 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 1.46E-04 |
| 12 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.46E-04 |
| 13 | GO:0034975: protein folding in endoplasmic reticulum | 1.46E-04 |
| 14 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 1.46E-04 |
| 15 | GO:0019567: arabinose biosynthetic process | 1.46E-04 |
| 16 | GO:0006422: aspartyl-tRNA aminoacylation | 1.46E-04 |
| 17 | GO:1990022: RNA polymerase III complex localization to nucleus | 1.46E-04 |
| 18 | GO:0045454: cell redox homeostasis | 1.82E-04 |
| 19 | GO:0031349: positive regulation of defense response | 3.33E-04 |
| 20 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 3.33E-04 |
| 21 | GO:0015709: thiosulfate transport | 3.33E-04 |
| 22 | GO:0015914: phospholipid transport | 3.33E-04 |
| 23 | GO:0071422: succinate transmembrane transport | 3.33E-04 |
| 24 | GO:0019374: galactolipid metabolic process | 3.33E-04 |
| 25 | GO:0006099: tricarboxylic acid cycle | 3.40E-04 |
| 26 | GO:0034976: response to endoplasmic reticulum stress | 4.81E-04 |
| 27 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 5.47E-04 |
| 28 | GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening | 5.47E-04 |
| 29 | GO:0006011: UDP-glucose metabolic process | 5.47E-04 |
| 30 | GO:0010272: response to silver ion | 5.47E-04 |
| 31 | GO:0006012: galactose metabolic process | 7.64E-04 |
| 32 | GO:0033014: tetrapyrrole biosynthetic process | 7.83E-04 |
| 33 | GO:0000187: activation of MAPK activity | 7.83E-04 |
| 34 | GO:0015729: oxaloacetate transport | 7.83E-04 |
| 35 | GO:0006107: oxaloacetate metabolic process | 7.83E-04 |
| 36 | GO:0002239: response to oomycetes | 7.83E-04 |
| 37 | GO:2000038: regulation of stomatal complex development | 1.04E-03 |
| 38 | GO:0006734: NADH metabolic process | 1.04E-03 |
| 39 | GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA | 1.04E-03 |
| 40 | GO:0045227: capsule polysaccharide biosynthetic process | 1.04E-03 |
| 41 | GO:0033358: UDP-L-arabinose biosynthetic process | 1.04E-03 |
| 42 | GO:0033356: UDP-L-arabinose metabolic process | 1.04E-03 |
| 43 | GO:0019252: starch biosynthetic process | 1.19E-03 |
| 44 | GO:0018279: protein N-linked glycosylation via asparagine | 1.31E-03 |
| 45 | GO:0006461: protein complex assembly | 1.31E-03 |
| 46 | GO:0071423: malate transmembrane transport | 1.31E-03 |
| 47 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.61E-03 |
| 48 | GO:0035435: phosphate ion transmembrane transport | 1.61E-03 |
| 49 | GO:0010405: arabinogalactan protein metabolic process | 1.61E-03 |
| 50 | GO:0009615: response to virus | 1.81E-03 |
| 51 | GO:0040008: regulation of growth | 1.88E-03 |
| 52 | GO:2000037: regulation of stomatal complex patterning | 1.93E-03 |
| 53 | GO:0008272: sulfate transport | 2.27E-03 |
| 54 | GO:1900056: negative regulation of leaf senescence | 2.27E-03 |
| 55 | GO:0000338: protein deneddylation | 2.27E-03 |
| 56 | GO:0009651: response to salt stress | 2.29E-03 |
| 57 | GO:0009832: plant-type cell wall biogenesis | 2.47E-03 |
| 58 | GO:0006644: phospholipid metabolic process | 2.63E-03 |
| 59 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.63E-03 |
| 60 | GO:0010043: response to zinc ion | 2.72E-03 |
| 61 | GO:0019430: removal of superoxide radicals | 3.00E-03 |
| 62 | GO:0006972: hyperosmotic response | 3.00E-03 |
| 63 | GO:0009699: phenylpropanoid biosynthetic process | 3.00E-03 |
| 64 | GO:0006839: mitochondrial transport | 3.39E-03 |
| 65 | GO:0009821: alkaloid biosynthetic process | 3.40E-03 |
| 66 | GO:0006783: heme biosynthetic process | 3.40E-03 |
| 67 | GO:0046685: response to arsenic-containing substance | 3.40E-03 |
| 68 | GO:0043067: regulation of programmed cell death | 3.81E-03 |
| 69 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.81E-03 |
| 70 | GO:0006032: chitin catabolic process | 4.23E-03 |
| 71 | GO:0006896: Golgi to vacuole transport | 4.23E-03 |
| 72 | GO:0000272: polysaccharide catabolic process | 4.67E-03 |
| 73 | GO:0030148: sphingolipid biosynthetic process | 4.67E-03 |
| 74 | GO:0006913: nucleocytoplasmic transport | 4.67E-03 |
| 75 | GO:0000266: mitochondrial fission | 5.13E-03 |
| 76 | GO:0006468: protein phosphorylation | 5.17E-03 |
| 77 | GO:0006810: transport | 5.20E-03 |
| 78 | GO:0006807: nitrogen compound metabolic process | 5.60E-03 |
| 79 | GO:0006626: protein targeting to mitochondrion | 5.60E-03 |
| 80 | GO:0006108: malate metabolic process | 5.60E-03 |
| 81 | GO:0010229: inflorescence development | 5.60E-03 |
| 82 | GO:0010588: cotyledon vascular tissue pattern formation | 5.60E-03 |
| 83 | GO:0006096: glycolytic process | 6.08E-03 |
| 84 | GO:0048316: seed development | 6.28E-03 |
| 85 | GO:0009225: nucleotide-sugar metabolic process | 6.59E-03 |
| 86 | GO:0009620: response to fungus | 6.68E-03 |
| 87 | GO:0009553: embryo sac development | 7.11E-03 |
| 88 | GO:0000027: ribosomal large subunit assembly | 7.63E-03 |
| 89 | GO:0016998: cell wall macromolecule catabolic process | 8.73E-03 |
| 90 | GO:0015992: proton transport | 8.73E-03 |
| 91 | GO:0009814: defense response, incompatible interaction | 9.30E-03 |
| 92 | GO:0030433: ubiquitin-dependent ERAD pathway | 9.30E-03 |
| 93 | GO:0080092: regulation of pollen tube growth | 9.30E-03 |
| 94 | GO:0071456: cellular response to hypoxia | 9.30E-03 |
| 95 | GO:0019748: secondary metabolic process | 9.30E-03 |
| 96 | GO:0009058: biosynthetic process | 9.67E-03 |
| 97 | GO:0010227: floral organ abscission | 9.89E-03 |
| 98 | GO:0009306: protein secretion | 1.05E-02 |
| 99 | GO:0009790: embryo development | 1.07E-02 |
| 100 | GO:0006633: fatty acid biosynthetic process | 1.15E-02 |
| 101 | GO:0010305: leaf vascular tissue pattern formation | 1.24E-02 |
| 102 | GO:0055114: oxidation-reduction process | 1.25E-02 |
| 103 | GO:0010150: leaf senescence | 1.27E-02 |
| 104 | GO:0048544: recognition of pollen | 1.30E-02 |
| 105 | GO:0009646: response to absence of light | 1.30E-02 |
| 106 | GO:0010183: pollen tube guidance | 1.37E-02 |
| 107 | GO:0000302: response to reactive oxygen species | 1.43E-02 |
| 108 | GO:0002229: defense response to oomycetes | 1.43E-02 |
| 109 | GO:0007166: cell surface receptor signaling pathway | 1.45E-02 |
| 110 | GO:0015031: protein transport | 1.47E-02 |
| 111 | GO:0006464: cellular protein modification process | 1.64E-02 |
| 112 | GO:0009627: systemic acquired resistance | 2.01E-02 |
| 113 | GO:0015995: chlorophyll biosynthetic process | 2.09E-02 |
| 114 | GO:0016049: cell growth | 2.17E-02 |
| 115 | GO:0030244: cellulose biosynthetic process | 2.25E-02 |
| 116 | GO:0016192: vesicle-mediated transport | 2.57E-02 |
| 117 | GO:0046777: protein autophosphorylation | 2.61E-02 |
| 118 | GO:0016051: carbohydrate biosynthetic process | 2.66E-02 |
| 119 | GO:0006897: endocytosis | 3.01E-02 |
| 120 | GO:0006886: intracellular protein transport | 3.01E-02 |
| 121 | GO:0006631: fatty acid metabolic process | 3.01E-02 |
| 122 | GO:0009640: photomorphogenesis | 3.19E-02 |
| 123 | GO:0051707: response to other organism | 3.19E-02 |
| 124 | GO:0009636: response to toxic substance | 3.47E-02 |
| 125 | GO:0016042: lipid catabolic process | 3.50E-02 |
| 126 | GO:0009751: response to salicylic acid | 3.55E-02 |
| 127 | GO:0000165: MAPK cascade | 3.65E-02 |
| 128 | GO:0009664: plant-type cell wall organization | 3.75E-02 |
| 129 | GO:0009846: pollen germination | 3.75E-02 |
| 130 | GO:0016310: phosphorylation | 3.89E-02 |
| 131 | GO:0009585: red, far-red light phototransduction | 3.94E-02 |
| 132 | GO:0009809: lignin biosynthetic process | 3.94E-02 |
| 133 | GO:0006364: rRNA processing | 3.94E-02 |
| 134 | GO:0006486: protein glycosylation | 3.94E-02 |
| 135 | GO:0008152: metabolic process | 3.96E-02 |
| 136 | GO:0009909: regulation of flower development | 4.24E-02 |
| 137 | GO:0048367: shoot system development | 4.54E-02 |
| 138 | GO:0009626: plant-type hypersensitive response | 4.65E-02 |
| 139 | GO:0006952: defense response | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050269: coniferyl-aldehyde dehydrogenase activity | 0.00E+00 |
| 2 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 3 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 4 | GO:0004040: amidase activity | 2.79E-05 |
| 5 | GO:0016301: kinase activity | 3.12E-05 |
| 6 | GO:0003756: protein disulfide isomerase activity | 4.74E-05 |
| 7 | GO:0003978: UDP-glucose 4-epimerase activity | 5.87E-05 |
| 8 | GO:0004747: ribokinase activity | 5.87E-05 |
| 9 | GO:0008865: fructokinase activity | 1.02E-04 |
| 10 | GO:0004325: ferrochelatase activity | 1.46E-04 |
| 11 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 1.46E-04 |
| 12 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 1.46E-04 |
| 13 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 1.46E-04 |
| 14 | GO:0004815: aspartate-tRNA ligase activity | 1.46E-04 |
| 15 | GO:0050736: O-malonyltransferase activity | 3.33E-04 |
| 16 | GO:0015117: thiosulfate transmembrane transporter activity | 3.33E-04 |
| 17 | GO:0045140: inositol phosphoceramide synthase activity | 3.33E-04 |
| 18 | GO:0015036: disulfide oxidoreductase activity | 3.33E-04 |
| 19 | GO:1901677: phosphate transmembrane transporter activity | 3.33E-04 |
| 20 | GO:0004634: phosphopyruvate hydratase activity | 3.33E-04 |
| 21 | GO:0016805: dipeptidase activity | 5.47E-04 |
| 22 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 5.47E-04 |
| 23 | GO:0005310: dicarboxylic acid transmembrane transporter activity | 5.47E-04 |
| 24 | GO:0015141: succinate transmembrane transporter activity | 5.47E-04 |
| 25 | GO:0015131: oxaloacetate transmembrane transporter activity | 7.83E-04 |
| 26 | GO:0017077: oxidative phosphorylation uncoupler activity | 7.83E-04 |
| 27 | GO:0050373: UDP-arabinose 4-epimerase activity | 1.04E-03 |
| 28 | GO:0004791: thioredoxin-disulfide reductase activity | 1.11E-03 |
| 29 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.31E-03 |
| 30 | GO:0005496: steroid binding | 1.31E-03 |
| 31 | GO:0015301: anion:anion antiporter activity | 1.31E-03 |
| 32 | GO:0005452: inorganic anion exchanger activity | 1.31E-03 |
| 33 | GO:0047714: galactolipase activity | 1.61E-03 |
| 34 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.61E-03 |
| 35 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 1.61E-03 |
| 36 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 1.61E-03 |
| 37 | GO:0016615: malate dehydrogenase activity | 1.61E-03 |
| 38 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.61E-03 |
| 39 | GO:0004674: protein serine/threonine kinase activity | 1.77E-03 |
| 40 | GO:0030060: L-malate dehydrogenase activity | 1.93E-03 |
| 41 | GO:0102391: decanoate--CoA ligase activity | 1.93E-03 |
| 42 | GO:0008320: protein transmembrane transporter activity | 2.27E-03 |
| 43 | GO:0004620: phospholipase activity | 2.27E-03 |
| 44 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.27E-03 |
| 45 | GO:0008235: metalloexopeptidase activity | 2.27E-03 |
| 46 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 2.27E-03 |
| 47 | GO:0015140: malate transmembrane transporter activity | 2.27E-03 |
| 48 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.63E-03 |
| 49 | GO:0004708: MAP kinase kinase activity | 2.63E-03 |
| 50 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 3.00E-03 |
| 51 | GO:0047617: acyl-CoA hydrolase activity | 3.81E-03 |
| 52 | GO:0030955: potassium ion binding | 3.81E-03 |
| 53 | GO:0016844: strictosidine synthase activity | 3.81E-03 |
| 54 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 3.81E-03 |
| 55 | GO:0004743: pyruvate kinase activity | 3.81E-03 |
| 56 | GO:0005524: ATP binding | 3.91E-03 |
| 57 | GO:0004568: chitinase activity | 4.23E-03 |
| 58 | GO:0004177: aminopeptidase activity | 4.67E-03 |
| 59 | GO:0004129: cytochrome-c oxidase activity | 4.67E-03 |
| 60 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 5.13E-03 |
| 61 | GO:0015116: sulfate transmembrane transporter activity | 5.13E-03 |
| 62 | GO:0008378: galactosyltransferase activity | 5.13E-03 |
| 63 | GO:0000175: 3'-5'-exoribonuclease activity | 5.60E-03 |
| 64 | GO:0004535: poly(A)-specific ribonuclease activity | 6.09E-03 |
| 65 | GO:0008061: chitin binding | 6.59E-03 |
| 66 | GO:0015035: protein disulfide oxidoreductase activity | 7.54E-03 |
| 67 | GO:0008408: 3'-5' exonuclease activity | 8.73E-03 |
| 68 | GO:0004540: ribonuclease activity | 8.73E-03 |
| 69 | GO:0016758: transferase activity, transferring hexosyl groups | 8.93E-03 |
| 70 | GO:0016779: nucleotidyltransferase activity | 9.30E-03 |
| 71 | GO:0047134: protein-disulfide reductase activity | 1.11E-02 |
| 72 | GO:0001085: RNA polymerase II transcription factor binding | 1.24E-02 |
| 73 | GO:0008194: UDP-glycosyltransferase activity | 1.42E-02 |
| 74 | GO:0000166: nucleotide binding | 1.55E-02 |
| 75 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.57E-02 |
| 76 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.72E-02 |
| 77 | GO:0051213: dioxygenase activity | 1.86E-02 |
| 78 | GO:0000287: magnesium ion binding | 1.93E-02 |
| 79 | GO:0016740: transferase activity | 1.99E-02 |
| 80 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.01E-02 |
| 81 | GO:0004683: calmodulin-dependent protein kinase activity | 2.09E-02 |
| 82 | GO:0004806: triglyceride lipase activity | 2.09E-02 |
| 83 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.25E-02 |
| 84 | GO:0005096: GTPase activator activity | 2.33E-02 |
| 85 | GO:0005507: copper ion binding | 2.42E-02 |
| 86 | GO:0030145: manganese ion binding | 2.49E-02 |
| 87 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.49E-02 |
| 88 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.66E-02 |
| 89 | GO:0003746: translation elongation factor activity | 2.66E-02 |
| 90 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.37E-02 |
| 91 | GO:0003924: GTPase activity | 3.60E-02 |
| 92 | GO:0005215: transporter activity | 4.24E-02 |
| 93 | GO:0031625: ubiquitin protein ligase binding | 4.24E-02 |
| 94 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.75E-02 |
| 95 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.75E-02 |
| 96 | GO:0022857: transmembrane transporter activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0005829: cytosol | 6.77E-06 |
| 3 | GO:0005783: endoplasmic reticulum | 3.70E-05 |
| 4 | GO:0032580: Golgi cisterna membrane | 1.25E-04 |
| 5 | GO:0045252: oxoglutarate dehydrogenase complex | 1.46E-04 |
| 6 | GO:0005794: Golgi apparatus | 1.46E-04 |
| 7 | GO:0030014: CCR4-NOT complex | 1.46E-04 |
| 8 | GO:0031314: extrinsic component of mitochondrial inner membrane | 3.33E-04 |
| 9 | GO:0000015: phosphopyruvate hydratase complex | 3.33E-04 |
| 10 | GO:0030132: clathrin coat of coated pit | 5.47E-04 |
| 11 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 5.47E-04 |
| 12 | GO:0005886: plasma membrane | 6.41E-04 |
| 13 | GO:0030658: transport vesicle membrane | 7.83E-04 |
| 14 | GO:0008250: oligosaccharyltransferase complex | 1.31E-03 |
| 15 | GO:0005746: mitochondrial respiratory chain | 1.31E-03 |
| 16 | GO:0005788: endoplasmic reticulum lumen | 1.92E-03 |
| 17 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 2.27E-03 |
| 18 | GO:0045273: respiratory chain complex II | 2.63E-03 |
| 19 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 2.63E-03 |
| 20 | GO:0000326: protein storage vacuole | 3.00E-03 |
| 21 | GO:0016020: membrane | 3.28E-03 |
| 22 | GO:0008180: COP9 signalosome | 3.40E-03 |
| 23 | GO:0005740: mitochondrial envelope | 4.23E-03 |
| 24 | GO:0005750: mitochondrial respiratory chain complex III | 6.09E-03 |
| 25 | GO:0005773: vacuole | 6.20E-03 |
| 26 | GO:0005730: nucleolus | 6.65E-03 |
| 27 | GO:0005743: mitochondrial inner membrane | 6.82E-03 |
| 28 | GO:0009506: plasmodesma | 7.31E-03 |
| 29 | GO:0005774: vacuolar membrane | 7.65E-03 |
| 30 | GO:0005737: cytoplasm | 7.97E-03 |
| 31 | GO:0005741: mitochondrial outer membrane | 8.73E-03 |
| 32 | GO:0009524: phragmoplast | 9.67E-03 |
| 33 | GO:0030136: clathrin-coated vesicle | 1.11E-02 |
| 34 | GO:0031965: nuclear membrane | 1.37E-02 |
| 35 | GO:0000932: P-body | 1.86E-02 |
| 36 | GO:0005789: endoplasmic reticulum membrane | 1.94E-02 |
| 37 | GO:0005667: transcription factor complex | 2.01E-02 |
| 38 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.16E-02 |
| 39 | GO:0005874: microtubule | 2.36E-02 |
| 40 | GO:0005819: spindle | 2.83E-02 |
| 41 | GO:0031902: late endosome membrane | 3.01E-02 |
| 42 | GO:0016021: integral component of membrane | 3.09E-02 |
| 43 | GO:0005635: nuclear envelope | 4.14E-02 |
| 44 | GO:0005834: heterotrimeric G-protein complex | 4.65E-02 |
| 45 | GO:0009505: plant-type cell wall | 4.94E-02 |