co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072321: chaperone-mediated protein transport	0.00E+00
2	GO:0044843: cell cycle G1/S phase transition	0.00E+00
3	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
4	GO:0006430: lysyl-tRNA aminoacylation	3.50E-05
5	GO:0000494: box C/D snoRNA 3'-end processing	3.50E-05
6	GO:1990258: histone glutamine methylation	3.50E-05
7	GO:0042964: thioredoxin reduction	3.50E-05
8	GO:0006364: rRNA processing	4.77E-05
9	GO:0000027: ribosomal large subunit assembly	7.44E-05
10	GO:0031204: posttranslational protein targeting to membrane, translocation	8.78E-05
11	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	8.78E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	1.52E-04
13	GO:0045039: protein import into mitochondrial inner membrane	1.52E-04
14	GO:0010197: polar nucleus fusion	1.60E-04
15	GO:0046686: response to cadmium ion	1.87E-04
16	GO:0042254: ribosome biogenesis	3.30E-04
17	GO:0006412: translation	3.73E-04
18	GO:0031167: rRNA methylation	3.89E-04
19	GO:0000741: karyogamy	4.78E-04
20	GO:0009853: photorespiration	4.85E-04
21	GO:0009423: chorismate biosynthetic process	5.70E-04
22	GO:0051603: proteolysis involved in cellular protein catabolic process	8.51E-04
23	GO:0019430: removal of superoxide radicals	8.71E-04
24	GO:0001558: regulation of cell growth	8.71E-04
25	GO:0010262: somatic embryogenesis	8.71E-04
26	GO:0001510: RNA methylation	8.71E-04
27	GO:0007338: single fertilization	9.78E-04
28	GO:0009734: auxin-activated signaling pathway	1.06E-03
29	GO:0016573: histone acetylation	1.09E-03
30	GO:0010205: photoinhibition	1.09E-03
31	GO:0006032: chitin catabolic process	1.20E-03
32	GO:0010162: seed dormancy process	1.20E-03
33	GO:0009073: aromatic amino acid family biosynthetic process	1.32E-03
34	GO:0000272: polysaccharide catabolic process	1.32E-03
35	GO:0006626: protein targeting to mitochondrion	1.57E-03
36	GO:0048467: gynoecium development	1.70E-03
37	GO:0006457: protein folding	1.94E-03
38	GO:0034976: response to endoplasmic reticulum stress	1.97E-03
39	GO:0006511: ubiquitin-dependent protein catabolic process	2.06E-03
40	GO:0009944: polarity specification of adaxial/abaxial axis	2.12E-03
41	GO:0051302: regulation of cell division	2.26E-03
42	GO:0016998: cell wall macromolecule catabolic process	2.41E-03
43	GO:0030433: ubiquitin-dependent ERAD pathway	2.56E-03
44	GO:0009294: DNA mediated transformation	2.71E-03
45	GO:0008033: tRNA processing	3.20E-03
46	GO:0009567: double fertilization forming a zygote and endosperm	4.42E-03
47	GO:0045454: cell redox homeostasis	4.42E-03
48	GO:0001666: response to hypoxia	4.99E-03
49	GO:0016049: cell growth	5.78E-03
50	GO:0006099: tricarboxylic acid cycle	7.27E-03
51	GO:0009644: response to high light intensity	8.88E-03
52	GO:0000154: rRNA modification	9.12E-03
53	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.61E-03
54	GO:0009846: pollen germination	9.86E-03
55	GO:0009909: regulation of flower development	1.11E-02
56	GO:0048316: seed development	1.19E-02
57	GO:0009626: plant-type hypersensitive response	1.22E-02
58	GO:0009553: embryo sac development	1.30E-02
59	GO:0009651: response to salt stress	1.59E-02
60	GO:0006413: translational initiation	1.86E-02
61	GO:0040008: regulation of growth	1.89E-02
62	GO:0010228: vegetative to reproductive phase transition of meristem	2.02E-02
63	GO:0009617: response to bacterium	2.22E-02
64	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
65	GO:0007275: multicellular organism development	3.85E-02
66	GO:0009408: response to heat	4.11E-02
67	GO:0008152: metabolic process	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0004107: chorismate synthase activity	0.00E+00
2	GO:0030515: snoRNA binding	8.12E-06
3	GO:1990259: histone-glutamine methyltransferase activity	3.50E-05
4	GO:0004824: lysine-tRNA ligase activity	3.50E-05
5	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	8.78E-05
6	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	8.78E-05
7	GO:0035241: protein-arginine omega-N monomethyltransferase activity	8.78E-05
8	GO:0004298: threonine-type endopeptidase activity	9.30E-05
9	GO:0008649: rRNA methyltransferase activity	1.52E-04
10	GO:0008469: histone-arginine N-methyltransferase activity	1.52E-04
11	GO:0004108: citrate (Si)-synthase activity	2.25E-04
12	GO:0003735: structural constituent of ribosome	3.00E-04
13	GO:0005086: ARF guanyl-nucleotide exchange factor activity	3.05E-04
14	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.84E-04
15	GO:0008235: metalloexopeptidase activity	6.66E-04
16	GO:0008121: ubiquinol-cytochrome-c reductase activity	6.66E-04
17	GO:0003723: RNA binding	8.43E-04
18	GO:0004568: chitinase activity	1.20E-03
19	GO:0004129: cytochrome-c oxidase activity	1.32E-03
20	GO:0008565: protein transporter activity	1.69E-03
21	GO:0008061: chitin binding	1.84E-03
22	GO:0004407: histone deacetylase activity	2.12E-03
23	GO:0003756: protein disulfide isomerase activity	2.87E-03
24	GO:0004791: thioredoxin-disulfide reductase activity	3.53E-03
25	GO:0010181: FMN binding	3.53E-03
26	GO:0008233: peptidase activity	3.63E-03
27	GO:0051537: 2 iron, 2 sulfur cluster binding	8.88E-03
28	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.25E-02
29	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.25E-02
30	GO:0051082: unfolded protein binding	1.33E-02
31	GO:0005507: copper ion binding	1.38E-02
32	GO:0016758: transferase activity, transferring hexosyl groups	1.53E-02
33	GO:0019843: rRNA binding	1.56E-02
34	GO:0008194: UDP-glycosyltransferase activity	2.12E-02
35	GO:0003743: translation initiation factor activity	2.19E-02
36	GO:0008168: methyltransferase activity	2.60E-02
37	GO:0003729: mRNA binding	2.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
3	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
4	GO:0005730: nucleolus	9.81E-15
5	GO:0031428: box C/D snoRNP complex	4.00E-06
6	GO:0005788: endoplasmic reticulum lumen	9.34E-06
7	GO:0032040: small-subunit processome	3.77E-05
8	GO:0045271: respiratory chain complex I	8.34E-05
9	GO:0035267: NuA4 histone acetyltransferase complex	8.78E-05
10	GO:0005839: proteasome core complex	9.30E-05
11	GO:0005618: cell wall	2.07E-04
12	GO:0016592: mediator complex	2.16E-04
13	GO:0005829: cytosol	2.27E-04
14	GO:0005746: mitochondrial respiratory chain	3.89E-04
15	GO:0022625: cytosolic large ribosomal subunit	4.54E-04
16	GO:0005840: ribosome	6.18E-04
17	GO:0031966: mitochondrial membrane	7.69E-04
18	GO:0005774: vacuolar membrane	8.11E-04
19	GO:0000502: proteasome complex	8.23E-04
20	GO:0005747: mitochondrial respiratory chain complex I	9.93E-04
21	GO:0015030: Cajal body	1.09E-03
22	GO:0005852: eukaryotic translation initiation factor 3 complex	1.32E-03
23	GO:0005750: mitochondrial respiratory chain complex III	1.70E-03
24	GO:0005773: vacuole	1.70E-03
25	GO:0005759: mitochondrial matrix	1.78E-03
26	GO:0005758: mitochondrial intermembrane space	2.12E-03
27	GO:0015935: small ribosomal subunit	2.41E-03
28	GO:0022627: cytosolic small ribosomal subunit	2.56E-03
29	GO:0005783: endoplasmic reticulum	2.75E-03
30	GO:0030529: intracellular ribonucleoprotein complex	4.99E-03
31	GO:0009506: plasmodesma	8.40E-03
32	GO:0009507: chloroplast	8.49E-03
33	GO:0022626: cytosolic ribosome	9.22E-03
34	GO:0005794: Golgi apparatus	1.42E-02
35	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.85E-02
36	GO:0005743: mitochondrial inner membrane	3.90E-02
37	GO:0005739: mitochondrion	4.59E-02