Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051553: flavone biosynthetic process0.00E+00
2GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
3GO:0002764: immune response-regulating signaling pathway0.00E+00
4GO:0010401: pectic galactan metabolic process0.00E+00
5GO:0009992: cellular water homeostasis0.00E+00
6GO:0016337: single organismal cell-cell adhesion7.58E-05
7GO:0006643: membrane lipid metabolic process7.58E-05
8GO:0019483: beta-alanine biosynthetic process1.81E-04
9GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.81E-04
10GO:0060151: peroxisome localization1.81E-04
11GO:0015012: heparan sulfate proteoglycan biosynthetic process1.81E-04
12GO:0000737: DNA catabolic process, endonucleolytic1.81E-04
13GO:0080185: effector dependent induction by symbiont of host immune response1.81E-04
14GO:0006024: glycosaminoglycan biosynthetic process1.81E-04
15GO:0052541: plant-type cell wall cellulose metabolic process1.81E-04
16GO:0051645: Golgi localization1.81E-04
17GO:0006212: uracil catabolic process1.81E-04
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.15E-04
19GO:0016045: detection of bacterium3.05E-04
20GO:0010359: regulation of anion channel activity3.05E-04
21GO:0090436: leaf pavement cell development3.05E-04
22GO:0015783: GDP-fucose transport3.05E-04
23GO:0006517: protein deglycosylation3.05E-04
24GO:0000706: meiotic DNA double-strand break processing3.05E-04
25GO:0051646: mitochondrion localization3.05E-04
26GO:0009751: response to salicylic acid3.73E-04
27GO:0006515: misfolded or incompletely synthesized protein catabolic process4.41E-04
28GO:0048194: Golgi vesicle budding4.41E-04
29GO:0009311: oligosaccharide metabolic process4.41E-04
30GO:0002239: response to oomycetes4.41E-04
31GO:0006516: glycoprotein catabolic process4.41E-04
32GO:0010188: response to microbial phytotoxin5.87E-04
33GO:0048830: adventitious root development5.87E-04
34GO:0006085: acetyl-CoA biosynthetic process5.87E-04
35GO:0006468: protein phosphorylation5.88E-04
36GO:0006665: sphingolipid metabolic process7.44E-04
37GO:0009957: epidermal cell fate specification7.44E-04
38GO:0009816: defense response to bacterium, incompatible interaction8.20E-04
39GO:0009617: response to bacterium8.26E-04
40GO:0042138: meiotic DNA double-strand break formation9.07E-04
41GO:0009759: indole glucosinolate biosynthetic process9.07E-04
42GO:0009813: flavonoid biosynthetic process1.05E-03
43GO:0009612: response to mechanical stimulus1.08E-03
44GO:0000911: cytokinesis by cell plate formation1.08E-03
45GO:0010044: response to aluminum ion1.26E-03
46GO:0010161: red light signaling pathway1.26E-03
47GO:0046470: phosphatidylcholine metabolic process1.26E-03
48GO:1900056: negative regulation of leaf senescence1.26E-03
49GO:0006099: tricarboxylic acid cycle1.31E-03
50GO:0006102: isocitrate metabolic process1.46E-03
51GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.46E-03
52GO:0030162: regulation of proteolysis1.46E-03
53GO:0006875: cellular metal ion homeostasis1.46E-03
54GO:0010204: defense response signaling pathway, resistance gene-independent1.66E-03
55GO:0043562: cellular response to nitrogen levels1.66E-03
56GO:2000031: regulation of salicylic acid mediated signaling pathway1.66E-03
57GO:0015780: nucleotide-sugar transport1.87E-03
58GO:0031347: regulation of defense response1.93E-03
59GO:0043069: negative regulation of programmed cell death2.32E-03
60GO:0009641: shade avoidance2.32E-03
61GO:0006259: DNA metabolic process2.32E-03
62GO:0019684: photosynthesis, light reaction2.56E-03
63GO:0006265: DNA topological change2.56E-03
64GO:0030148: sphingolipid biosynthetic process2.56E-03
65GO:0009684: indoleacetic acid biosynthetic process2.56E-03
66GO:0009682: induced systemic resistance2.56E-03
67GO:0052544: defense response by callose deposition in cell wall2.56E-03
68GO:0009620: response to fungus2.78E-03
69GO:0000266: mitochondrial fission2.80E-03
70GO:0030048: actin filament-based movement3.06E-03
71GO:0006807: nitrogen compound metabolic process3.06E-03
72GO:0048467: gynoecium development3.32E-03
73GO:0009969: xyloglucan biosynthetic process3.59E-03
74GO:0000162: tryptophan biosynthetic process3.86E-03
75GO:0080147: root hair cell development4.15E-03
76GO:0007131: reciprocal meiotic recombination5.03E-03
77GO:2000022: regulation of jasmonic acid mediated signaling pathway5.03E-03
78GO:0030433: ubiquitin-dependent ERAD pathway5.03E-03
79GO:0035428: hexose transmembrane transport5.03E-03
80GO:0006012: galactose metabolic process5.34E-03
81GO:0006470: protein dephosphorylation5.96E-03
82GO:0010087: phloem or xylem histogenesis6.31E-03
83GO:0006885: regulation of pH6.64E-03
84GO:0046323: glucose import6.64E-03
85GO:0061025: membrane fusion6.99E-03
86GO:0002229: defense response to oomycetes7.69E-03
87GO:0010193: response to ozone7.69E-03
88GO:0010090: trichome morphogenesis8.42E-03
89GO:0006904: vesicle docking involved in exocytosis9.17E-03
90GO:0016192: vesicle-mediated transport1.05E-02
91GO:0046777: protein autophosphorylation1.07E-02
92GO:0009627: systemic acquired resistance1.07E-02
93GO:0008219: cell death1.20E-02
94GO:0009817: defense response to fungus, incompatible interaction1.20E-02
95GO:0042742: defense response to bacterium1.23E-02
96GO:0048767: root hair elongation1.24E-02
97GO:0006499: N-terminal protein myristoylation1.28E-02
98GO:0045087: innate immune response1.42E-02
99GO:0006508: proteolysis1.45E-02
100GO:0006887: exocytosis1.60E-02
101GO:0010114: response to red light1.70E-02
102GO:0051707: response to other organism1.70E-02
103GO:0008643: carbohydrate transport1.79E-02
104GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.94E-02
105GO:0006812: cation transport1.99E-02
106GO:0006486: protein glycosylation2.10E-02
107GO:0006813: potassium ion transport2.10E-02
108GO:0048367: shoot system development2.42E-02
109GO:0009626: plant-type hypersensitive response2.47E-02
110GO:0009738: abscisic acid-activated signaling pathway2.55E-02
111GO:0042545: cell wall modification2.64E-02
112GO:0018105: peptidyl-serine phosphorylation2.75E-02
113GO:0009737: response to abscisic acid3.17E-02
114GO:0006952: defense response3.46E-02
115GO:0006633: fatty acid biosynthetic process3.72E-02
116GO:0040008: regulation of growth3.85E-02
117GO:0010150: leaf senescence3.98E-02
118GO:0045490: pectin catabolic process3.98E-02
119GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.31E-02
120GO:0007166: cell surface receptor signaling pathway4.37E-02
121GO:0050832: defense response to fungus4.77E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0005548: phospholipid transporter activity0.00E+00
3GO:0003837: beta-ureidopropionase activity0.00E+00
4GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
5GO:0004012: phospholipid-translocating ATPase activity2.05E-05
6GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity7.58E-05
7GO:1901149: salicylic acid binding7.58E-05
8GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.36E-04
9GO:0045140: inositol phosphoceramide synthase activity1.81E-04
10GO:0016889: endodeoxyribonuclease activity, producing 3'-phosphomonoesters1.81E-04
11GO:0030742: GTP-dependent protein binding1.81E-04
12GO:0005524: ATP binding2.08E-04
13GO:0004383: guanylate cyclase activity3.05E-04
14GO:0005457: GDP-fucose transmembrane transporter activity3.05E-04
15GO:0003878: ATP citrate synthase activity4.41E-04
16GO:0001653: peptide receptor activity4.41E-04
17GO:0004449: isocitrate dehydrogenase (NAD+) activity4.41E-04
18GO:0005509: calcium ion binding4.78E-04
19GO:0009044: xylan 1,4-beta-xylosidase activity5.87E-04
20GO:0019199: transmembrane receptor protein kinase activity5.87E-04
21GO:0004674: protein serine/threonine kinase activity7.29E-04
22GO:0045431: flavonol synthase activity7.44E-04
23GO:0005546: phosphatidylinositol-4,5-bisphosphate binding7.44E-04
24GO:0017137: Rab GTPase binding7.44E-04
25GO:0004656: procollagen-proline 4-dioxygenase activity1.08E-03
26GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.08E-03
27GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.25E-03
28GO:0004034: aldose 1-epimerase activity1.46E-03
29GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.66E-03
30GO:0004630: phospholipase D activity1.66E-03
31GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.66E-03
32GO:0004713: protein tyrosine kinase activity2.32E-03
33GO:0031625: ubiquitin protein ligase binding2.37E-03
34GO:0005506: iron ion binding2.58E-03
35GO:0003774: motor activity3.32E-03
36GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.89E-03
37GO:0031418: L-ascorbic acid binding4.15E-03
38GO:0035251: UDP-glucosyltransferase activity4.73E-03
39GO:0005451: monovalent cation:proton antiporter activity6.31E-03
40GO:0001085: RNA polymerase II transcription factor binding6.64E-03
41GO:0005355: glucose transmembrane transporter activity6.99E-03
42GO:0015299: solute:proton antiporter activity6.99E-03
43GO:0019825: oxygen binding7.83E-03
44GO:0000287: magnesium ion binding7.91E-03
45GO:0015385: sodium:proton antiporter activity8.42E-03
46GO:0016301: kinase activity1.04E-02
47GO:0009931: calcium-dependent protein serine/threonine kinase activity1.07E-02
48GO:0004721: phosphoprotein phosphatase activity1.12E-02
49GO:0004683: calmodulin-dependent protein kinase activity1.12E-02
50GO:0030247: polysaccharide binding1.12E-02
51GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.30E-02
52GO:0004722: protein serine/threonine phosphatase activity1.32E-02
53GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.33E-02
54GO:0008422: beta-glucosidase activity1.51E-02
55GO:0005484: SNAP receptor activity1.70E-02
56GO:0004672: protein kinase activity1.99E-02
57GO:0020037: heme binding2.18E-02
58GO:0008234: cysteine-type peptidase activity2.25E-02
59GO:0046872: metal ion binding2.25E-02
60GO:0045330: aspartyl esterase activity2.25E-02
61GO:0030599: pectinesterase activity2.58E-02
62GO:0003779: actin binding2.64E-02
63GO:0016746: transferase activity, transferring acyl groups2.75E-02
64GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.47E-02
65GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.47E-02
66GO:0015144: carbohydrate transmembrane transporter activity3.59E-02
67GO:0046910: pectinesterase inhibitor activity3.78E-02
68GO:0015297: antiporter activity3.85E-02
69GO:0005351: sugar:proton symporter activity3.91E-02
70GO:0005516: calmodulin binding3.95E-02
71GO:0008017: microtubule binding4.11E-02
72GO:0042802: identical protein binding4.71E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane8.01E-07
2GO:0005802: trans-Golgi network5.21E-05
3GO:0045252: oxoglutarate dehydrogenase complex7.58E-05
4GO:0016021: integral component of membrane7.80E-05
5GO:0070062: extracellular exosome4.41E-04
6GO:0009346: citrate lyase complex4.41E-04
7GO:0005768: endosome4.57E-04
8GO:0000228: nuclear chromosome7.44E-04
9GO:0016459: myosin complex2.32E-03
10GO:0005578: proteinaceous extracellular matrix3.06E-03
11GO:0000139: Golgi membrane4.19E-03
12GO:0009506: plasmodesma6.25E-03
13GO:0009504: cell plate7.34E-03
14GO:0000145: exocyst8.05E-03
15GO:0071944: cell periphery8.42E-03
16GO:0005667: transcription factor complex1.07E-02
17GO:0019005: SCF ubiquitin ligase complex1.20E-02
18GO:0005794: Golgi apparatus1.20E-02
19GO:0005774: vacuolar membrane1.73E-02
20GO:0005789: endoplasmic reticulum membrane2.09E-02
21GO:0016020: membrane2.35E-02
22GO:0012505: endomembrane system2.64E-02
23GO:0009543: chloroplast thylakoid lumen3.16E-02
24GO:0005623: cell3.22E-02
25GO:0009524: phragmoplast3.28E-02
26GO:0005737: cytoplasm4.57E-02
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Gene type



Gene DE type