GO Enrichment Analysis of Co-expressed Genes with
AT3G46130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.53E-05 |
| 6 | GO:0006438: valyl-tRNA aminoacylation | 2.53E-05 |
| 7 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.44E-05 |
| 8 | GO:0080092: regulation of pollen tube growth | 6.47E-05 |
| 9 | GO:0016117: carotenoid biosynthetic process | 8.63E-05 |
| 10 | GO:0045910: negative regulation of DNA recombination | 1.13E-04 |
| 11 | GO:0000913: preprophase band assembly | 1.13E-04 |
| 12 | GO:0031022: nuclear migration along microfilament | 1.13E-04 |
| 13 | GO:0006000: fructose metabolic process | 1.13E-04 |
| 14 | GO:0010731: protein glutathionylation | 1.69E-04 |
| 15 | GO:0009902: chloroplast relocation | 2.30E-04 |
| 16 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.30E-04 |
| 17 | GO:0009904: chloroplast accumulation movement | 2.95E-04 |
| 18 | GO:0016123: xanthophyll biosynthetic process | 2.95E-04 |
| 19 | GO:0016120: carotene biosynthetic process | 2.95E-04 |
| 20 | GO:0006544: glycine metabolic process | 2.95E-04 |
| 21 | GO:0009853: photorespiration | 3.23E-04 |
| 22 | GO:0006563: L-serine metabolic process | 3.65E-04 |
| 23 | GO:0006458: 'de novo' protein folding | 4.36E-04 |
| 24 | GO:0009903: chloroplast avoidance movement | 4.36E-04 |
| 25 | GO:0042026: protein refolding | 4.36E-04 |
| 26 | GO:0009704: de-etiolation | 5.89E-04 |
| 27 | GO:0048564: photosystem I assembly | 5.89E-04 |
| 28 | GO:0010100: negative regulation of photomorphogenesis | 6.69E-04 |
| 29 | GO:0006002: fructose 6-phosphate metabolic process | 6.69E-04 |
| 30 | GO:0009657: plastid organization | 6.69E-04 |
| 31 | GO:0035999: tetrahydrofolate interconversion | 8.38E-04 |
| 32 | GO:0006298: mismatch repair | 9.24E-04 |
| 33 | GO:0009773: photosynthetic electron transport in photosystem I | 1.01E-03 |
| 34 | GO:0006415: translational termination | 1.01E-03 |
| 35 | GO:0006094: gluconeogenesis | 1.20E-03 |
| 36 | GO:0005986: sucrose biosynthetic process | 1.20E-03 |
| 37 | GO:0019253: reductive pentose-phosphate cycle | 1.30E-03 |
| 38 | GO:0042343: indole glucosinolate metabolic process | 1.40E-03 |
| 39 | GO:0006418: tRNA aminoacylation for protein translation | 1.72E-03 |
| 40 | GO:0098542: defense response to other organism | 1.83E-03 |
| 41 | GO:0061077: chaperone-mediated protein folding | 1.83E-03 |
| 42 | GO:0016226: iron-sulfur cluster assembly | 1.95E-03 |
| 43 | GO:0009658: chloroplast organization | 1.99E-03 |
| 44 | GO:0006520: cellular amino acid metabolic process | 2.55E-03 |
| 45 | GO:0007018: microtubule-based movement | 2.68E-03 |
| 46 | GO:0019252: starch biosynthetic process | 2.80E-03 |
| 47 | GO:0016032: viral process | 3.07E-03 |
| 48 | GO:0000910: cytokinesis | 3.63E-03 |
| 49 | GO:0055114: oxidation-reduction process | 5.29E-03 |
| 50 | GO:0016051: carbohydrate biosynthetic process | 5.31E-03 |
| 51 | GO:0009416: response to light stimulus | 6.37E-03 |
| 52 | GO:0009636: response to toxic substance | 6.85E-03 |
| 53 | GO:0006417: regulation of translation | 8.35E-03 |
| 54 | GO:0009626: plant-type hypersensitive response | 9.13E-03 |
| 55 | GO:0018105: peptidyl-serine phosphorylation | 1.02E-02 |
| 56 | GO:0006396: RNA processing | 1.02E-02 |
| 57 | GO:0007623: circadian rhythm | 1.46E-02 |
| 58 | GO:0006810: transport | 1.90E-02 |
| 59 | GO:0005975: carbohydrate metabolic process | 1.97E-02 |
| 60 | GO:0046686: response to cadmium ion | 2.02E-02 |
| 61 | GO:0009860: pollen tube growth | 2.10E-02 |
| 62 | GO:0046777: protein autophosphorylation | 2.44E-02 |
| 63 | GO:0044550: secondary metabolite biosynthetic process | 2.47E-02 |
| 64 | GO:0045454: cell redox homeostasis | 2.64E-02 |
| 65 | GO:0009738: abscisic acid-activated signaling pathway | 4.51E-02 |
| 66 | GO:0035556: intracellular signal transduction | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 2 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 5 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 6 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 7 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 8 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 9 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 10 | GO:0004033: aldo-keto reductase (NADP) activity | 6.41E-06 |
| 11 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.94E-05 |
| 12 | GO:0004832: valine-tRNA ligase activity | 2.53E-05 |
| 13 | GO:0010291: carotene beta-ring hydroxylase activity | 6.44E-05 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.44E-05 |
| 15 | GO:0070402: NADPH binding | 1.13E-04 |
| 16 | GO:0032947: protein complex scaffold | 1.13E-04 |
| 17 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.13E-04 |
| 18 | GO:0016149: translation release factor activity, codon specific | 1.69E-04 |
| 19 | GO:0008453: alanine-glyoxylate transaminase activity | 2.30E-04 |
| 20 | GO:0004372: glycine hydroxymethyltransferase activity | 2.95E-04 |
| 21 | GO:0030983: mismatched DNA binding | 3.65E-04 |
| 22 | GO:0042578: phosphoric ester hydrolase activity | 3.65E-04 |
| 23 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 4.36E-04 |
| 24 | GO:0005198: structural molecule activity | 4.65E-04 |
| 25 | GO:0003747: translation release factor activity | 7.52E-04 |
| 26 | GO:0044183: protein binding involved in protein folding | 1.01E-03 |
| 27 | GO:0008266: poly(U) RNA binding | 1.30E-03 |
| 28 | GO:0051536: iron-sulfur cluster binding | 1.61E-03 |
| 29 | GO:0005528: FK506 binding | 1.61E-03 |
| 30 | GO:0005506: iron ion binding | 1.98E-03 |
| 31 | GO:0004812: aminoacyl-tRNA ligase activity | 2.30E-03 |
| 32 | GO:0003684: damaged DNA binding | 3.34E-03 |
| 33 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 4.06E-03 |
| 34 | GO:0004683: calmodulin-dependent protein kinase activity | 4.21E-03 |
| 35 | GO:0050897: cobalt ion binding | 4.99E-03 |
| 36 | GO:0016887: ATPase activity | 5.57E-03 |
| 37 | GO:0004364: glutathione transferase activity | 6.15E-03 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.04E-03 |
| 39 | GO:0003777: microtubule motor activity | 8.35E-03 |
| 40 | GO:0019825: oxygen binding | 9.07E-03 |
| 41 | GO:0022857: transmembrane transporter activity | 9.54E-03 |
| 42 | GO:0051082: unfolded protein binding | 9.95E-03 |
| 43 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.19E-02 |
| 44 | GO:0030170: pyridoxal phosphate binding | 1.25E-02 |
| 45 | GO:0008017: microtubule binding | 1.51E-02 |
| 46 | GO:0020037: heme binding | 2.04E-02 |
| 47 | GO:0050660: flavin adenine dinucleotide binding | 2.21E-02 |
| 48 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.79E-02 |
| 49 | GO:0004519: endonuclease activity | 3.26E-02 |
| 50 | GO:0005524: ATP binding | 3.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.18E-13 |
| 2 | GO:0009570: chloroplast stroma | 3.72E-06 |
| 3 | GO:0009509: chromoplast | 1.13E-04 |
| 4 | GO:0009941: chloroplast envelope | 1.14E-04 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.52E-04 |
| 6 | GO:0016324: apical plasma membrane | 9.24E-04 |
| 7 | GO:0005623: cell | 9.86E-04 |
| 8 | GO:0009534: chloroplast thylakoid | 1.06E-03 |
| 9 | GO:0005759: mitochondrial matrix | 1.19E-03 |
| 10 | GO:0048046: apoplast | 2.12E-03 |
| 11 | GO:0005871: kinesin complex | 2.30E-03 |
| 12 | GO:0031969: chloroplast membrane | 2.46E-03 |
| 13 | GO:0009504: cell plate | 2.80E-03 |
| 14 | GO:0005694: chromosome | 3.07E-03 |
| 15 | GO:0010319: stromule | 3.48E-03 |
| 16 | GO:0009707: chloroplast outer membrane | 4.52E-03 |
| 17 | GO:0009535: chloroplast thylakoid membrane | 5.59E-03 |
| 18 | GO:0005819: spindle | 5.64E-03 |
| 19 | GO:0005747: mitochondrial respiratory chain complex I | 8.93E-03 |
| 20 | GO:0010287: plastoglobule | 1.12E-02 |
| 21 | GO:0009543: chloroplast thylakoid lumen | 1.17E-02 |
| 22 | GO:0009524: phragmoplast | 1.21E-02 |
| 23 | GO:0005874: microtubule | 2.27E-02 |
| 24 | GO:0016020: membrane | 4.33E-02 |
| 25 | GO:0022626: cytosolic ribosome | 4.47E-02 |