GO Enrichment Analysis of Co-expressed Genes with
AT3G45850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0042493: response to drug | 0.00E+00 |
| 7 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 8 | GO:0006412: translation | 8.90E-15 |
| 9 | GO:0042254: ribosome biogenesis | 2.14E-11 |
| 10 | GO:0032544: plastid translation | 4.76E-08 |
| 11 | GO:0010207: photosystem II assembly | 3.16E-05 |
| 12 | GO:0006183: GTP biosynthetic process | 3.35E-05 |
| 13 | GO:0042372: phylloquinone biosynthetic process | 1.10E-04 |
| 14 | GO:0046520: sphingoid biosynthetic process | 2.16E-04 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.16E-04 |
| 16 | GO:0010442: guard cell morphogenesis | 2.16E-04 |
| 17 | GO:0000481: maturation of 5S rRNA | 2.16E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 2.16E-04 |
| 19 | GO:0042759: long-chain fatty acid biosynthetic process | 2.16E-04 |
| 20 | GO:1902458: positive regulation of stomatal opening | 2.16E-04 |
| 21 | GO:0034337: RNA folding | 2.16E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.16E-04 |
| 23 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.16E-04 |
| 24 | GO:0060627: regulation of vesicle-mediated transport | 2.16E-04 |
| 25 | GO:0010027: thylakoid membrane organization | 3.40E-04 |
| 26 | GO:0009735: response to cytokinin | 4.10E-04 |
| 27 | GO:0052541: plant-type cell wall cellulose metabolic process | 4.81E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.81E-04 |
| 29 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.81E-04 |
| 30 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.81E-04 |
| 31 | GO:1902448: positive regulation of shade avoidance | 7.83E-04 |
| 32 | GO:0015840: urea transport | 7.83E-04 |
| 33 | GO:0071705: nitrogen compound transport | 7.83E-04 |
| 34 | GO:0006518: peptide metabolic process | 7.83E-04 |
| 35 | GO:0006696: ergosterol biosynthetic process | 7.83E-04 |
| 36 | GO:2001295: malonyl-CoA biosynthetic process | 7.83E-04 |
| 37 | GO:0006833: water transport | 8.16E-04 |
| 38 | GO:0006241: CTP biosynthetic process | 1.12E-03 |
| 39 | GO:0051016: barbed-end actin filament capping | 1.12E-03 |
| 40 | GO:0006165: nucleoside diphosphate phosphorylation | 1.12E-03 |
| 41 | GO:0006228: UTP biosynthetic process | 1.12E-03 |
| 42 | GO:0009650: UV protection | 1.12E-03 |
| 43 | GO:1901332: negative regulation of lateral root development | 1.12E-03 |
| 44 | GO:0006168: adenine salvage | 1.12E-03 |
| 45 | GO:0006166: purine ribonucleoside salvage | 1.12E-03 |
| 46 | GO:0051639: actin filament network formation | 1.12E-03 |
| 47 | GO:0009411: response to UV | 1.29E-03 |
| 48 | GO:0071249: cellular response to nitrate | 1.48E-03 |
| 49 | GO:0044206: UMP salvage | 1.48E-03 |
| 50 | GO:0051764: actin crosslink formation | 1.48E-03 |
| 51 | GO:0000413: protein peptidyl-prolyl isomerization | 1.63E-03 |
| 52 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.89E-03 |
| 53 | GO:0043097: pyrimidine nucleoside salvage | 1.89E-03 |
| 54 | GO:0010236: plastoquinone biosynthetic process | 1.89E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.89E-03 |
| 56 | GO:0044209: AMP salvage | 1.89E-03 |
| 57 | GO:0006206: pyrimidine nucleobase metabolic process | 2.33E-03 |
| 58 | GO:0032973: amino acid export | 2.33E-03 |
| 59 | GO:0035435: phosphate ion transmembrane transport | 2.33E-03 |
| 60 | GO:0042549: photosystem II stabilization | 2.33E-03 |
| 61 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.33E-03 |
| 62 | GO:1901259: chloroplast rRNA processing | 2.80E-03 |
| 63 | GO:0006694: steroid biosynthetic process | 2.80E-03 |
| 64 | GO:0009854: oxidative photosynthetic carbon pathway | 2.80E-03 |
| 65 | GO:0010019: chloroplast-nucleus signaling pathway | 2.80E-03 |
| 66 | GO:0009955: adaxial/abaxial pattern specification | 2.80E-03 |
| 67 | GO:0051693: actin filament capping | 3.30E-03 |
| 68 | GO:0009610: response to symbiotic fungus | 3.30E-03 |
| 69 | GO:0009772: photosynthetic electron transport in photosystem II | 3.30E-03 |
| 70 | GO:0043090: amino acid import | 3.30E-03 |
| 71 | GO:0010411: xyloglucan metabolic process | 3.67E-03 |
| 72 | GO:0032508: DNA duplex unwinding | 3.82E-03 |
| 73 | GO:2000070: regulation of response to water deprivation | 3.82E-03 |
| 74 | GO:0015996: chlorophyll catabolic process | 4.38E-03 |
| 75 | GO:0007186: G-protein coupled receptor signaling pathway | 4.38E-03 |
| 76 | GO:0009808: lignin metabolic process | 4.38E-03 |
| 77 | GO:0009932: cell tip growth | 4.38E-03 |
| 78 | GO:0010206: photosystem II repair | 4.95E-03 |
| 79 | GO:0080144: amino acid homeostasis | 4.95E-03 |
| 80 | GO:0000902: cell morphogenesis | 4.95E-03 |
| 81 | GO:0015780: nucleotide-sugar transport | 4.95E-03 |
| 82 | GO:0034599: cellular response to oxidative stress | 5.38E-03 |
| 83 | GO:0043067: regulation of programmed cell death | 5.56E-03 |
| 84 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.56E-03 |
| 85 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.18E-03 |
| 86 | GO:0043069: negative regulation of programmed cell death | 6.18E-03 |
| 87 | GO:0006949: syncytium formation | 6.18E-03 |
| 88 | GO:0019684: photosynthesis, light reaction | 6.84E-03 |
| 89 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.84E-03 |
| 90 | GO:0043085: positive regulation of catalytic activity | 6.84E-03 |
| 91 | GO:0042546: cell wall biogenesis | 6.90E-03 |
| 92 | GO:0071555: cell wall organization | 7.02E-03 |
| 93 | GO:0045037: protein import into chloroplast stroma | 7.51E-03 |
| 94 | GO:0015706: nitrate transport | 7.51E-03 |
| 95 | GO:0006006: glucose metabolic process | 8.22E-03 |
| 96 | GO:0030036: actin cytoskeleton organization | 8.22E-03 |
| 97 | GO:0042538: hyperosmotic salinity response | 8.33E-03 |
| 98 | GO:0019253: reductive pentose-phosphate cycle | 8.94E-03 |
| 99 | GO:0007015: actin filament organization | 8.94E-03 |
| 100 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 9.63E-03 |
| 101 | GO:0010167: response to nitrate | 9.69E-03 |
| 102 | GO:0010025: wax biosynthetic process | 1.05E-02 |
| 103 | GO:0006071: glycerol metabolic process | 1.05E-02 |
| 104 | GO:0000027: ribosomal large subunit assembly | 1.12E-02 |
| 105 | GO:0051017: actin filament bundle assembly | 1.12E-02 |
| 106 | GO:0009116: nucleoside metabolic process | 1.12E-02 |
| 107 | GO:0010026: trichome differentiation | 1.21E-02 |
| 108 | GO:0061077: chaperone-mediated protein folding | 1.29E-02 |
| 109 | GO:0006869: lipid transport | 1.30E-02 |
| 110 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.46E-02 |
| 111 | GO:0006284: base-excision repair | 1.55E-02 |
| 112 | GO:0009306: protein secretion | 1.55E-02 |
| 113 | GO:0042335: cuticle development | 1.74E-02 |
| 114 | GO:0034220: ion transmembrane transport | 1.74E-02 |
| 115 | GO:0006662: glycerol ether metabolic process | 1.83E-02 |
| 116 | GO:0010197: polar nucleus fusion | 1.83E-02 |
| 117 | GO:0010182: sugar mediated signaling pathway | 1.83E-02 |
| 118 | GO:0007018: microtubule-based movement | 1.93E-02 |
| 119 | GO:0006633: fatty acid biosynthetic process | 2.01E-02 |
| 120 | GO:0071554: cell wall organization or biogenesis | 2.12E-02 |
| 121 | GO:0002229: defense response to oomycetes | 2.12E-02 |
| 122 | GO:0000302: response to reactive oxygen species | 2.12E-02 |
| 123 | GO:0016132: brassinosteroid biosynthetic process | 2.12E-02 |
| 124 | GO:0010583: response to cyclopentenone | 2.23E-02 |
| 125 | GO:0032502: developmental process | 2.23E-02 |
| 126 | GO:0009828: plant-type cell wall loosening | 2.44E-02 |
| 127 | GO:0009627: systemic acquired resistance | 2.99E-02 |
| 128 | GO:0015995: chlorophyll biosynthetic process | 3.10E-02 |
| 129 | GO:0009416: response to light stimulus | 3.11E-02 |
| 130 | GO:0009826: unidimensional cell growth | 3.29E-02 |
| 131 | GO:0018298: protein-chromophore linkage | 3.34E-02 |
| 132 | GO:0010311: lateral root formation | 3.46E-02 |
| 133 | GO:0009834: plant-type secondary cell wall biogenesis | 3.58E-02 |
| 134 | GO:0006811: ion transport | 3.58E-02 |
| 135 | GO:0009409: response to cold | 3.68E-02 |
| 136 | GO:0009631: cold acclimation | 3.70E-02 |
| 137 | GO:0007568: aging | 3.70E-02 |
| 138 | GO:0009853: photorespiration | 3.95E-02 |
| 139 | GO:0055085: transmembrane transport | 4.17E-02 |
| 140 | GO:0006457: protein folding | 4.27E-02 |
| 141 | GO:0030001: metal ion transport | 4.33E-02 |
| 142 | GO:0006631: fatty acid metabolic process | 4.46E-02 |
| 143 | GO:0042542: response to hydrogen peroxide | 4.59E-02 |
| 144 | GO:0009640: photomorphogenesis | 4.73E-02 |
| 145 | GO:0015979: photosynthesis | 4.82E-02 |
| 146 | GO:0008643: carbohydrate transport | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 2 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 5 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 8 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 9 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 10 | GO:0003735: structural constituent of ribosome | 4.25E-18 |
| 11 | GO:0019843: rRNA binding | 1.68E-16 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.00E-07 |
| 13 | GO:0005528: FK506 binding | 5.37E-05 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.16E-04 |
| 15 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.16E-04 |
| 16 | GO:0015200: methylammonium transmembrane transporter activity | 2.16E-04 |
| 17 | GO:0000170: sphingosine hydroxylase activity | 2.16E-04 |
| 18 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.16E-04 |
| 19 | GO:0004817: cysteine-tRNA ligase activity | 4.81E-04 |
| 20 | GO:0042284: sphingolipid delta-4 desaturase activity | 4.81E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.81E-04 |
| 22 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.81E-04 |
| 23 | GO:0003938: IMP dehydrogenase activity | 4.81E-04 |
| 24 | GO:0004075: biotin carboxylase activity | 7.83E-04 |
| 25 | GO:0030267: glyoxylate reductase (NADP) activity | 7.83E-04 |
| 26 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 7.83E-04 |
| 27 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 7.83E-04 |
| 28 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 7.83E-04 |
| 29 | GO:0003999: adenine phosphoribosyltransferase activity | 1.12E-03 |
| 30 | GO:0004550: nucleoside diphosphate kinase activity | 1.12E-03 |
| 31 | GO:0008097: 5S rRNA binding | 1.12E-03 |
| 32 | GO:0001872: (1->3)-beta-D-glucan binding | 1.12E-03 |
| 33 | GO:0052793: pectin acetylesterase activity | 1.48E-03 |
| 34 | GO:0043495: protein anchor | 1.48E-03 |
| 35 | GO:0015204: urea transmembrane transporter activity | 1.48E-03 |
| 36 | GO:0004659: prenyltransferase activity | 1.48E-03 |
| 37 | GO:0004845: uracil phosphoribosyltransferase activity | 1.48E-03 |
| 38 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.48E-03 |
| 39 | GO:0051011: microtubule minus-end binding | 1.89E-03 |
| 40 | GO:0004040: amidase activity | 1.89E-03 |
| 41 | GO:0003989: acetyl-CoA carboxylase activity | 1.89E-03 |
| 42 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.89E-03 |
| 43 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.17E-03 |
| 44 | GO:0052689: carboxylic ester hydrolase activity | 2.20E-03 |
| 45 | GO:0004130: cytochrome-c peroxidase activity | 2.33E-03 |
| 46 | GO:0016208: AMP binding | 2.33E-03 |
| 47 | GO:0016688: L-ascorbate peroxidase activity | 2.33E-03 |
| 48 | GO:0008519: ammonium transmembrane transporter activity | 2.33E-03 |
| 49 | GO:0051015: actin filament binding | 2.46E-03 |
| 50 | GO:0015631: tubulin binding | 2.80E-03 |
| 51 | GO:0004849: uridine kinase activity | 2.80E-03 |
| 52 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.80E-03 |
| 53 | GO:0051920: peroxiredoxin activity | 2.80E-03 |
| 54 | GO:0015250: water channel activity | 3.12E-03 |
| 55 | GO:0019899: enzyme binding | 3.30E-03 |
| 56 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.67E-03 |
| 57 | GO:0030674: protein binding, bridging | 3.82E-03 |
| 58 | GO:0016209: antioxidant activity | 3.82E-03 |
| 59 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.95E-03 |
| 60 | GO:0047617: acyl-CoA hydrolase activity | 5.56E-03 |
| 61 | GO:0008047: enzyme activator activity | 6.18E-03 |
| 62 | GO:0016788: hydrolase activity, acting on ester bonds | 7.18E-03 |
| 63 | GO:0015114: phosphate ion transmembrane transporter activity | 8.22E-03 |
| 64 | GO:0008324: cation transmembrane transporter activity | 1.21E-02 |
| 65 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.24E-02 |
| 66 | GO:0004707: MAP kinase activity | 1.29E-02 |
| 67 | GO:0022891: substrate-specific transmembrane transporter activity | 1.46E-02 |
| 68 | GO:0008514: organic anion transmembrane transporter activity | 1.55E-02 |
| 69 | GO:0047134: protein-disulfide reductase activity | 1.64E-02 |
| 70 | GO:0008080: N-acetyltransferase activity | 1.83E-02 |
| 71 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.83E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.93E-02 |
| 73 | GO:0008289: lipid binding | 2.30E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.33E-02 |
| 75 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.54E-02 |
| 76 | GO:0016413: O-acetyltransferase activity | 2.65E-02 |
| 77 | GO:0003824: catalytic activity | 2.71E-02 |
| 78 | GO:0016168: chlorophyll binding | 2.87E-02 |
| 79 | GO:0030247: polysaccharide binding | 3.10E-02 |
| 80 | GO:0008236: serine-type peptidase activity | 3.22E-02 |
| 81 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.34E-02 |
| 82 | GO:0004222: metalloendopeptidase activity | 3.58E-02 |
| 83 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.58E-02 |
| 84 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.70E-02 |
| 85 | GO:0003993: acid phosphatase activity | 4.07E-02 |
| 86 | GO:0050661: NADP binding | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 1.36E-31 |
| 3 | GO:0009507: chloroplast | 2.36E-25 |
| 4 | GO:0009941: chloroplast envelope | 1.10E-20 |
| 5 | GO:0005840: ribosome | 3.39E-17 |
| 6 | GO:0009579: thylakoid | 7.49E-17 |
| 7 | GO:0031977: thylakoid lumen | 3.14E-12 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 9.53E-12 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 5.72E-11 |
| 10 | GO:0009534: chloroplast thylakoid | 3.25E-07 |
| 11 | GO:0031225: anchored component of membrane | 8.93E-06 |
| 12 | GO:0009505: plant-type cell wall | 5.21E-05 |
| 13 | GO:0046658: anchored component of plasma membrane | 1.83E-04 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.16E-04 |
| 15 | GO:0048046: apoplast | 3.84E-04 |
| 16 | GO:0005884: actin filament | 4.49E-04 |
| 17 | GO:0008290: F-actin capping protein complex | 4.81E-04 |
| 18 | GO:0005618: cell wall | 4.94E-04 |
| 19 | GO:0000311: plastid large ribosomal subunit | 5.15E-04 |
| 20 | GO:0015934: large ribosomal subunit | 5.77E-04 |
| 21 | GO:0009528: plastid inner membrane | 7.83E-04 |
| 22 | GO:0016020: membrane | 8.03E-04 |
| 23 | GO:0032432: actin filament bundle | 1.12E-03 |
| 24 | GO:0009527: plastid outer membrane | 1.48E-03 |
| 25 | GO:0010319: stromule | 2.78E-03 |
| 26 | GO:0009536: plastid | 2.99E-03 |
| 27 | GO:0042807: central vacuole | 3.30E-03 |
| 28 | GO:0000326: protein storage vacuole | 4.38E-03 |
| 29 | GO:0005763: mitochondrial small ribosomal subunit | 4.95E-03 |
| 30 | GO:0005876: spindle microtubule | 5.56E-03 |
| 31 | GO:0009506: plasmodesma | 5.84E-03 |
| 32 | GO:0032040: small-subunit processome | 7.51E-03 |
| 33 | GO:0030095: chloroplast photosystem II | 8.94E-03 |
| 34 | GO:0022625: cytosolic large ribosomal subunit | 9.83E-03 |
| 35 | GO:0009654: photosystem II oxygen evolving complex | 1.21E-02 |
| 36 | GO:0042651: thylakoid membrane | 1.21E-02 |
| 37 | GO:0015935: small ribosomal subunit | 1.29E-02 |
| 38 | GO:0009532: plastid stroma | 1.29E-02 |
| 39 | GO:0005886: plasma membrane | 1.47E-02 |
| 40 | GO:0005871: kinesin complex | 1.64E-02 |
| 41 | GO:0009523: photosystem II | 2.02E-02 |
| 42 | GO:0019898: extrinsic component of membrane | 2.02E-02 |
| 43 | GO:0016592: mediator complex | 2.23E-02 |
| 44 | GO:0005778: peroxisomal membrane | 2.54E-02 |
| 45 | GO:0022626: cytosolic ribosome | 2.94E-02 |
| 46 | GO:0009707: chloroplast outer membrane | 3.34E-02 |
| 47 | GO:0005874: microtubule | 4.09E-02 |
| 48 | GO:0031969: chloroplast membrane | 4.23E-02 |
| 49 | GO:0005576: extracellular region | 4.92E-02 |