GO Enrichment Analysis of Co-expressed Genes with
AT3G45230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0042493: response to drug | 0.00E+00 |
| 4 | GO:0006412: translation | 4.07E-11 |
| 5 | GO:0042254: ribosome biogenesis | 5.56E-11 |
| 6 | GO:0010207: photosystem II assembly | 9.47E-07 |
| 7 | GO:0032544: plastid translation | 6.80E-06 |
| 8 | GO:0010027: thylakoid membrane organization | 3.22E-05 |
| 9 | GO:0015979: photosynthesis | 1.17E-04 |
| 10 | GO:0046520: sphingoid biosynthetic process | 2.43E-04 |
| 11 | GO:0043489: RNA stabilization | 2.43E-04 |
| 12 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.43E-04 |
| 13 | GO:0000481: maturation of 5S rRNA | 2.43E-04 |
| 14 | GO:1904964: positive regulation of phytol biosynthetic process | 2.43E-04 |
| 15 | GO:0042759: long-chain fatty acid biosynthetic process | 2.43E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 2.43E-04 |
| 17 | GO:1902458: positive regulation of stomatal opening | 2.43E-04 |
| 18 | GO:0034337: RNA folding | 2.43E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.43E-04 |
| 20 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.43E-04 |
| 21 | GO:0060627: regulation of vesicle-mediated transport | 2.43E-04 |
| 22 | GO:0010206: photosystem II repair | 3.32E-04 |
| 23 | GO:0010205: photoinhibition | 3.94E-04 |
| 24 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.39E-04 |
| 25 | GO:0010115: regulation of abscisic acid biosynthetic process | 5.39E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.39E-04 |
| 27 | GO:0006006: glucose metabolic process | 6.91E-04 |
| 28 | GO:0055114: oxidation-reduction process | 7.44E-04 |
| 29 | GO:0015840: urea transport | 8.75E-04 |
| 30 | GO:0071705: nitrogen compound transport | 8.75E-04 |
| 31 | GO:0090391: granum assembly | 8.75E-04 |
| 32 | GO:0006518: peptide metabolic process | 8.75E-04 |
| 33 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.63E-04 |
| 34 | GO:0006833: water transport | 9.63E-04 |
| 35 | GO:0009650: UV protection | 1.25E-03 |
| 36 | GO:1901332: negative regulation of lateral root development | 1.25E-03 |
| 37 | GO:0006168: adenine salvage | 1.25E-03 |
| 38 | GO:0006166: purine ribonucleoside salvage | 1.25E-03 |
| 39 | GO:0071484: cellular response to light intensity | 1.25E-03 |
| 40 | GO:0051639: actin filament network formation | 1.25E-03 |
| 41 | GO:0009306: protein secretion | 1.66E-03 |
| 42 | GO:0006183: GTP biosynthetic process | 1.67E-03 |
| 43 | GO:0051764: actin crosslink formation | 1.67E-03 |
| 44 | GO:0071249: cellular response to nitrate | 1.67E-03 |
| 45 | GO:0042335: cuticle development | 1.94E-03 |
| 46 | GO:0000413: protein peptidyl-prolyl isomerization | 1.94E-03 |
| 47 | GO:0010182: sugar mediated signaling pathway | 2.09E-03 |
| 48 | GO:0006564: L-serine biosynthetic process | 2.13E-03 |
| 49 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.13E-03 |
| 50 | GO:0044209: AMP salvage | 2.13E-03 |
| 51 | GO:0016132: brassinosteroid biosynthetic process | 2.57E-03 |
| 52 | GO:0032973: amino acid export | 2.62E-03 |
| 53 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.62E-03 |
| 54 | GO:0035435: phosphate ion transmembrane transport | 2.62E-03 |
| 55 | GO:0006596: polyamine biosynthetic process | 2.62E-03 |
| 56 | GO:0006561: proline biosynthetic process | 2.62E-03 |
| 57 | GO:0048759: xylem vessel member cell differentiation | 2.62E-03 |
| 58 | GO:0010405: arabinogalactan protein metabolic process | 2.62E-03 |
| 59 | GO:0042549: photosystem II stabilization | 2.62E-03 |
| 60 | GO:0009416: response to light stimulus | 2.78E-03 |
| 61 | GO:0042372: phylloquinone biosynthetic process | 3.15E-03 |
| 62 | GO:1901259: chloroplast rRNA processing | 3.15E-03 |
| 63 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.15E-03 |
| 64 | GO:0006694: steroid biosynthetic process | 3.15E-03 |
| 65 | GO:0010019: chloroplast-nucleus signaling pathway | 3.15E-03 |
| 66 | GO:0009955: adaxial/abaxial pattern specification | 3.15E-03 |
| 67 | GO:0010196: nonphotochemical quenching | 3.72E-03 |
| 68 | GO:0010444: guard mother cell differentiation | 3.72E-03 |
| 69 | GO:0006400: tRNA modification | 3.72E-03 |
| 70 | GO:0009610: response to symbiotic fungus | 3.72E-03 |
| 71 | GO:0043090: amino acid import | 3.72E-03 |
| 72 | GO:0055085: transmembrane transport | 4.23E-03 |
| 73 | GO:0030091: protein repair | 4.31E-03 |
| 74 | GO:0006605: protein targeting | 4.31E-03 |
| 75 | GO:0032508: DNA duplex unwinding | 4.31E-03 |
| 76 | GO:2000070: regulation of response to water deprivation | 4.31E-03 |
| 77 | GO:0015995: chlorophyll biosynthetic process | 4.37E-03 |
| 78 | GO:0018298: protein-chromophore linkage | 4.83E-03 |
| 79 | GO:0007186: G-protein coupled receptor signaling pathway | 4.93E-03 |
| 80 | GO:0009808: lignin metabolic process | 4.93E-03 |
| 81 | GO:0015996: chlorophyll catabolic process | 4.93E-03 |
| 82 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.59E-03 |
| 83 | GO:0009631: cold acclimation | 5.59E-03 |
| 84 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 5.59E-03 |
| 85 | GO:0080144: amino acid homeostasis | 5.59E-03 |
| 86 | GO:0009638: phototropism | 6.27E-03 |
| 87 | GO:0034599: cellular response to oxidative stress | 6.41E-03 |
| 88 | GO:0009688: abscisic acid biosynthetic process | 6.99E-03 |
| 89 | GO:0043069: negative regulation of programmed cell death | 6.99E-03 |
| 90 | GO:0019684: photosynthesis, light reaction | 7.73E-03 |
| 91 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.73E-03 |
| 92 | GO:0043085: positive regulation of catalytic activity | 7.73E-03 |
| 93 | GO:0009750: response to fructose | 7.73E-03 |
| 94 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.73E-03 |
| 95 | GO:0009826: unidimensional cell growth | 8.35E-03 |
| 96 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.49E-03 |
| 97 | GO:0045037: protein import into chloroplast stroma | 8.49E-03 |
| 98 | GO:0015706: nitrate transport | 8.49E-03 |
| 99 | GO:0009658: chloroplast organization | 8.77E-03 |
| 100 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.29E-03 |
| 101 | GO:0009725: response to hormone | 9.29E-03 |
| 102 | GO:0009735: response to cytokinin | 9.33E-03 |
| 103 | GO:0071555: cell wall organization | 9.55E-03 |
| 104 | GO:0042538: hyperosmotic salinity response | 9.93E-03 |
| 105 | GO:0010143: cutin biosynthetic process | 1.01E-02 |
| 106 | GO:0019253: reductive pentose-phosphate cycle | 1.01E-02 |
| 107 | GO:0010167: response to nitrate | 1.10E-02 |
| 108 | GO:0010025: wax biosynthetic process | 1.18E-02 |
| 109 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.20E-02 |
| 110 | GO:0000027: ribosomal large subunit assembly | 1.27E-02 |
| 111 | GO:0051017: actin filament bundle assembly | 1.27E-02 |
| 112 | GO:0061077: chaperone-mediated protein folding | 1.46E-02 |
| 113 | GO:0031408: oxylipin biosynthetic process | 1.46E-02 |
| 114 | GO:0006869: lipid transport | 1.63E-02 |
| 115 | GO:0009411: response to UV | 1.66E-02 |
| 116 | GO:0042127: regulation of cell proliferation | 1.76E-02 |
| 117 | GO:0016042: lipid catabolic process | 1.82E-02 |
| 118 | GO:0034220: ion transmembrane transport | 1.97E-02 |
| 119 | GO:0010087: phloem or xylem histogenesis | 1.97E-02 |
| 120 | GO:0006662: glycerol ether metabolic process | 2.07E-02 |
| 121 | GO:0008152: metabolic process | 2.14E-02 |
| 122 | GO:0042744: hydrogen peroxide catabolic process | 2.17E-02 |
| 123 | GO:0007018: microtubule-based movement | 2.18E-02 |
| 124 | GO:0006633: fatty acid biosynthetic process | 2.40E-02 |
| 125 | GO:0071554: cell wall organization or biogenesis | 2.41E-02 |
| 126 | GO:0002229: defense response to oomycetes | 2.41E-02 |
| 127 | GO:0000302: response to reactive oxygen species | 2.41E-02 |
| 128 | GO:0030163: protein catabolic process | 2.64E-02 |
| 129 | GO:0006979: response to oxidative stress | 3.09E-02 |
| 130 | GO:0016126: sterol biosynthetic process | 3.13E-02 |
| 131 | GO:0007165: signal transduction | 3.33E-02 |
| 132 | GO:0042128: nitrate assimilation | 3.39E-02 |
| 133 | GO:0010411: xyloglucan metabolic process | 3.52E-02 |
| 134 | GO:0016311: dephosphorylation | 3.65E-02 |
| 135 | GO:0010311: lateral root formation | 3.92E-02 |
| 136 | GO:0009834: plant-type secondary cell wall biogenesis | 4.05E-02 |
| 137 | GO:0009407: toxin catabolic process | 4.05E-02 |
| 138 | GO:0007568: aging | 4.19E-02 |
| 139 | GO:0045087: innate immune response | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 4 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 8 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 2.07E-14 |
| 10 | GO:0003735: structural constituent of ribosome | 6.83E-14 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.06E-10 |
| 12 | GO:0005528: FK506 binding | 3.52E-08 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.43E-04 |
| 14 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.43E-04 |
| 15 | GO:0045485: omega-6 fatty acid desaturase activity | 2.43E-04 |
| 16 | GO:0015200: methylammonium transmembrane transporter activity | 2.43E-04 |
| 17 | GO:0016768: spermine synthase activity | 2.43E-04 |
| 18 | GO:0000248: C-5 sterol desaturase activity | 2.43E-04 |
| 19 | GO:0000170: sphingosine hydroxylase activity | 2.43E-04 |
| 20 | GO:0042284: sphingolipid delta-4 desaturase activity | 5.39E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.39E-04 |
| 22 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.39E-04 |
| 23 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.39E-04 |
| 24 | GO:0003938: IMP dehydrogenase activity | 5.39E-04 |
| 25 | GO:0052689: carboxylic ester hydrolase activity | 6.13E-04 |
| 26 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.75E-04 |
| 27 | GO:0016851: magnesium chelatase activity | 1.25E-03 |
| 28 | GO:0003999: adenine phosphoribosyltransferase activity | 1.25E-03 |
| 29 | GO:0008097: 5S rRNA binding | 1.25E-03 |
| 30 | GO:0001872: (1->3)-beta-D-glucan binding | 1.25E-03 |
| 31 | GO:0016491: oxidoreductase activity | 1.49E-03 |
| 32 | GO:0022891: substrate-specific transmembrane transporter activity | 1.53E-03 |
| 33 | GO:0052793: pectin acetylesterase activity | 1.67E-03 |
| 34 | GO:0043495: protein anchor | 1.67E-03 |
| 35 | GO:0015204: urea transmembrane transporter activity | 1.67E-03 |
| 36 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.67E-03 |
| 37 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.67E-03 |
| 38 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.13E-03 |
| 39 | GO:0004040: amidase activity | 2.13E-03 |
| 40 | GO:0004130: cytochrome-c peroxidase activity | 2.62E-03 |
| 41 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.62E-03 |
| 42 | GO:0016208: AMP binding | 2.62E-03 |
| 43 | GO:0016688: L-ascorbate peroxidase activity | 2.62E-03 |
| 44 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.62E-03 |
| 45 | GO:0008519: ammonium transmembrane transporter activity | 2.62E-03 |
| 46 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.62E-03 |
| 47 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 3.15E-03 |
| 48 | GO:0015250: water channel activity | 3.71E-03 |
| 49 | GO:0019899: enzyme binding | 3.72E-03 |
| 50 | GO:0016168: chlorophyll binding | 3.92E-03 |
| 51 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.83E-03 |
| 52 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.93E-03 |
| 53 | GO:0003993: acid phosphatase activity | 6.41E-03 |
| 54 | GO:0050661: NADP binding | 6.98E-03 |
| 55 | GO:0008047: enzyme activator activity | 6.99E-03 |
| 56 | GO:0016788: hydrolase activity, acting on ester bonds | 8.98E-03 |
| 57 | GO:0015114: phosphate ion transmembrane transporter activity | 9.29E-03 |
| 58 | GO:0004565: beta-galactosidase activity | 9.29E-03 |
| 59 | GO:0008081: phosphoric diester hydrolase activity | 9.29E-03 |
| 60 | GO:0004022: alcohol dehydrogenase (NAD) activity | 9.29E-03 |
| 61 | GO:0051287: NAD binding | 9.58E-03 |
| 62 | GO:0008266: poly(U) RNA binding | 1.01E-02 |
| 63 | GO:0008146: sulfotransferase activity | 1.10E-02 |
| 64 | GO:0003777: microtubule motor activity | 1.18E-02 |
| 65 | GO:0004871: signal transducer activity | 1.54E-02 |
| 66 | GO:0030570: pectate lyase activity | 1.66E-02 |
| 67 | GO:0008514: organic anion transmembrane transporter activity | 1.76E-02 |
| 68 | GO:0047134: protein-disulfide reductase activity | 1.86E-02 |
| 69 | GO:0016829: lyase activity | 2.07E-02 |
| 70 | GO:0004791: thioredoxin-disulfide reductase activity | 2.18E-02 |
| 71 | GO:0004872: receptor activity | 2.29E-02 |
| 72 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.41E-02 |
| 73 | GO:0004518: nuclease activity | 2.52E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.64E-02 |
| 75 | GO:0051015: actin filament binding | 2.64E-02 |
| 76 | GO:0016791: phosphatase activity | 2.76E-02 |
| 77 | GO:0008017: microtubule binding | 2.76E-02 |
| 78 | GO:0008289: lipid binding | 2.86E-02 |
| 79 | GO:0016597: amino acid binding | 3.01E-02 |
| 80 | GO:0016413: O-acetyltransferase activity | 3.01E-02 |
| 81 | GO:0016787: hydrolase activity | 3.49E-02 |
| 82 | GO:0030247: polysaccharide binding | 3.52E-02 |
| 83 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.52E-02 |
| 84 | GO:0008236: serine-type peptidase activity | 3.65E-02 |
| 85 | GO:0004222: metalloendopeptidase activity | 4.05E-02 |
| 86 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.05E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.19E-02 |
| 88 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 1.71E-26 |
| 3 | GO:0009507: chloroplast | 1.14E-25 |
| 4 | GO:0009941: chloroplast envelope | 1.81E-17 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.69E-14 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.07E-14 |
| 7 | GO:0031977: thylakoid lumen | 7.05E-12 |
| 8 | GO:0005840: ribosome | 8.74E-12 |
| 9 | GO:0009579: thylakoid | 3.03E-11 |
| 10 | GO:0009534: chloroplast thylakoid | 4.56E-10 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.43E-04 |
| 12 | GO:0009515: granal stacked thylakoid | 2.43E-04 |
| 13 | GO:0046658: anchored component of plasma membrane | 2.57E-04 |
| 14 | GO:0030095: chloroplast photosystem II | 7.77E-04 |
| 15 | GO:0009528: plastid inner membrane | 8.75E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 8.75E-04 |
| 17 | GO:0005886: plasma membrane | 1.11E-03 |
| 18 | GO:0032432: actin filament bundle | 1.25E-03 |
| 19 | GO:0009505: plant-type cell wall | 1.33E-03 |
| 20 | GO:0009527: plastid outer membrane | 1.67E-03 |
| 21 | GO:0031225: anchored component of membrane | 1.69E-03 |
| 22 | GO:0009523: photosystem II | 2.40E-03 |
| 23 | GO:0016020: membrane | 3.48E-03 |
| 24 | GO:0042807: central vacuole | 3.72E-03 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 3.72E-03 |
| 26 | GO:0000326: protein storage vacuole | 4.93E-03 |
| 27 | GO:0015934: large ribosomal subunit | 5.59E-03 |
| 28 | GO:0005763: mitochondrial small ribosomal subunit | 5.59E-03 |
| 29 | GO:0005884: actin filament | 7.73E-03 |
| 30 | GO:0000311: plastid large ribosomal subunit | 8.49E-03 |
| 31 | GO:0032040: small-subunit processome | 8.49E-03 |
| 32 | GO:0000312: plastid small ribosomal subunit | 1.01E-02 |
| 33 | GO:0031969: chloroplast membrane | 1.15E-02 |
| 34 | GO:0009654: photosystem II oxygen evolving complex | 1.37E-02 |
| 35 | GO:0042651: thylakoid membrane | 1.37E-02 |
| 36 | GO:0015935: small ribosomal subunit | 1.46E-02 |
| 37 | GO:0009532: plastid stroma | 1.46E-02 |
| 38 | GO:0009706: chloroplast inner membrane | 1.52E-02 |
| 39 | GO:0016021: integral component of membrane | 1.77E-02 |
| 40 | GO:0005871: kinesin complex | 1.86E-02 |
| 41 | GO:0009506: plasmodesma | 2.11E-02 |
| 42 | GO:0019898: extrinsic component of membrane | 2.29E-02 |
| 43 | GO:0009295: nucleoid | 2.88E-02 |
| 44 | GO:0005778: peroxisomal membrane | 2.88E-02 |
| 45 | GO:0010319: stromule | 2.88E-02 |
| 46 | GO:0030529: intracellular ribonucleoprotein complex | 3.13E-02 |
| 47 | GO:0048046: apoplast | 3.40E-02 |
| 48 | GO:0022626: cytosolic ribosome | 3.66E-02 |
| 49 | GO:0009707: chloroplast outer membrane | 3.78E-02 |
| 50 | GO:0005819: spindle | 4.76E-02 |
| 51 | GO:0005874: microtubule | 4.86E-02 |