GO Enrichment Analysis of Co-expressed Genes with
AT3G43610
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0042407: cristae formation | 0.00E+00 |
| 6 | GO:0006223: uracil salvage | 0.00E+00 |
| 7 | GO:0006412: translation | 1.53E-13 |
| 8 | GO:0042254: ribosome biogenesis | 1.68E-09 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 4.43E-07 |
| 10 | GO:0009735: response to cytokinin | 2.39E-06 |
| 11 | GO:0010027: thylakoid membrane organization | 1.01E-05 |
| 12 | GO:0010236: plastoquinone biosynthetic process | 3.35E-05 |
| 13 | GO:1901259: chloroplast rRNA processing | 6.99E-05 |
| 14 | GO:0042372: phylloquinone biosynthetic process | 6.99E-05 |
| 15 | GO:0006353: DNA-templated transcription, termination | 1.20E-04 |
| 16 | GO:0032544: plastid translation | 1.50E-04 |
| 17 | GO:0042759: long-chain fatty acid biosynthetic process | 1.62E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 1.62E-04 |
| 19 | GO:0006430: lysyl-tRNA aminoacylation | 1.62E-04 |
| 20 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.62E-04 |
| 21 | GO:0060627: regulation of vesicle-mediated transport | 1.62E-04 |
| 22 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.69E-04 |
| 23 | GO:0030036: actin cytoskeleton organization | 3.96E-04 |
| 24 | GO:0090391: granum assembly | 6.04E-04 |
| 25 | GO:0006418: tRNA aminoacylation for protein translation | 6.78E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 8.63E-04 |
| 27 | GO:0006241: CTP biosynthetic process | 8.63E-04 |
| 28 | GO:0019048: modulation by virus of host morphology or physiology | 8.63E-04 |
| 29 | GO:0051016: barbed-end actin filament capping | 8.63E-04 |
| 30 | GO:0006165: nucleoside diphosphate phosphorylation | 8.63E-04 |
| 31 | GO:0006228: UTP biosynthetic process | 8.63E-04 |
| 32 | GO:0031048: chromatin silencing by small RNA | 8.63E-04 |
| 33 | GO:0010088: phloem development | 8.63E-04 |
| 34 | GO:1901332: negative regulation of lateral root development | 8.63E-04 |
| 35 | GO:0006168: adenine salvage | 8.63E-04 |
| 36 | GO:0006166: purine ribonucleoside salvage | 8.63E-04 |
| 37 | GO:0009102: biotin biosynthetic process | 8.63E-04 |
| 38 | GO:0009306: protein secretion | 9.56E-04 |
| 39 | GO:0006183: GTP biosynthetic process | 1.14E-03 |
| 40 | GO:0051567: histone H3-K9 methylation | 1.14E-03 |
| 41 | GO:0044206: UMP salvage | 1.14E-03 |
| 42 | GO:0015979: photosynthesis | 1.26E-03 |
| 43 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.45E-03 |
| 44 | GO:0043097: pyrimidine nucleoside salvage | 1.45E-03 |
| 45 | GO:0044209: AMP salvage | 1.45E-03 |
| 46 | GO:0032502: developmental process | 1.56E-03 |
| 47 | GO:0006206: pyrimidine nucleobase metabolic process | 1.78E-03 |
| 48 | GO:0032973: amino acid export | 1.78E-03 |
| 49 | GO:0035435: phosphate ion transmembrane transport | 1.78E-03 |
| 50 | GO:0016458: gene silencing | 1.78E-03 |
| 51 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.78E-03 |
| 52 | GO:0017148: negative regulation of translation | 2.14E-03 |
| 53 | GO:0010189: vitamin E biosynthetic process | 2.14E-03 |
| 54 | GO:0009854: oxidative photosynthetic carbon pathway | 2.14E-03 |
| 55 | GO:0010019: chloroplast-nucleus signaling pathway | 2.14E-03 |
| 56 | GO:0009955: adaxial/abaxial pattern specification | 2.14E-03 |
| 57 | GO:0051693: actin filament capping | 2.52E-03 |
| 58 | GO:0010196: nonphotochemical quenching | 2.52E-03 |
| 59 | GO:0000082: G1/S transition of mitotic cell cycle | 2.52E-03 |
| 60 | GO:0010444: guard mother cell differentiation | 2.52E-03 |
| 61 | GO:0006400: tRNA modification | 2.52E-03 |
| 62 | GO:0009772: photosynthetic electron transport in photosystem II | 2.52E-03 |
| 63 | GO:0043090: amino acid import | 2.52E-03 |
| 64 | GO:0048481: plant ovule development | 2.74E-03 |
| 65 | GO:0042255: ribosome assembly | 2.91E-03 |
| 66 | GO:0006605: protein targeting | 2.91E-03 |
| 67 | GO:0045010: actin nucleation | 2.91E-03 |
| 68 | GO:0048564: photosystem I assembly | 2.91E-03 |
| 69 | GO:0006526: arginine biosynthetic process | 3.33E-03 |
| 70 | GO:0034599: cellular response to oxidative stress | 3.61E-03 |
| 71 | GO:0080144: amino acid homeostasis | 3.77E-03 |
| 72 | GO:0000902: cell morphogenesis | 3.77E-03 |
| 73 | GO:0015780: nucleotide-sugar transport | 3.77E-03 |
| 74 | GO:0043067: regulation of programmed cell death | 4.22E-03 |
| 75 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.22E-03 |
| 76 | GO:0010205: photoinhibition | 4.22E-03 |
| 77 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.69E-03 |
| 78 | GO:0006535: cysteine biosynthetic process from serine | 4.69E-03 |
| 79 | GO:0030422: production of siRNA involved in RNA interference | 4.69E-03 |
| 80 | GO:0045036: protein targeting to chloroplast | 4.69E-03 |
| 81 | GO:0009793: embryo development ending in seed dormancy | 4.70E-03 |
| 82 | GO:0043085: positive regulation of catalytic activity | 5.19E-03 |
| 83 | GO:0010102: lateral root morphogenesis | 6.22E-03 |
| 84 | GO:0006006: glucose metabolic process | 6.22E-03 |
| 85 | GO:0019253: reductive pentose-phosphate cycle | 6.76E-03 |
| 86 | GO:0010207: photosystem II assembly | 6.76E-03 |
| 87 | GO:0007015: actin filament organization | 6.76E-03 |
| 88 | GO:0006096: glycolytic process | 7.08E-03 |
| 89 | GO:0010025: wax biosynthetic process | 7.90E-03 |
| 90 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.90E-03 |
| 91 | GO:0000027: ribosomal large subunit assembly | 8.48E-03 |
| 92 | GO:0019344: cysteine biosynthetic process | 8.48E-03 |
| 93 | GO:0009116: nucleoside metabolic process | 8.48E-03 |
| 94 | GO:0006306: DNA methylation | 9.72E-03 |
| 95 | GO:0030245: cellulose catabolic process | 1.04E-02 |
| 96 | GO:0009411: response to UV | 1.10E-02 |
| 97 | GO:0042127: regulation of cell proliferation | 1.17E-02 |
| 98 | GO:0009790: embryo development | 1.25E-02 |
| 99 | GO:0008033: tRNA processing | 1.31E-02 |
| 100 | GO:0000413: protein peptidyl-prolyl isomerization | 1.31E-02 |
| 101 | GO:0006633: fatty acid biosynthetic process | 1.34E-02 |
| 102 | GO:0006520: cellular amino acid metabolic process | 1.38E-02 |
| 103 | GO:0006662: glycerol ether metabolic process | 1.38E-02 |
| 104 | GO:0010197: polar nucleus fusion | 1.38E-02 |
| 105 | GO:0006342: chromatin silencing | 1.38E-02 |
| 106 | GO:0009741: response to brassinosteroid | 1.38E-02 |
| 107 | GO:0007018: microtubule-based movement | 1.45E-02 |
| 108 | GO:0000302: response to reactive oxygen species | 1.60E-02 |
| 109 | GO:0010583: response to cyclopentenone | 1.67E-02 |
| 110 | GO:0010090: trichome morphogenesis | 1.75E-02 |
| 111 | GO:0009567: double fertilization forming a zygote and endosperm | 1.83E-02 |
| 112 | GO:0051607: defense response to virus | 1.99E-02 |
| 113 | GO:0009816: defense response to bacterium, incompatible interaction | 2.16E-02 |
| 114 | GO:0009627: systemic acquired resistance | 2.24E-02 |
| 115 | GO:0009658: chloroplast organization | 2.29E-02 |
| 116 | GO:0006508: proteolysis | 2.41E-02 |
| 117 | GO:0006457: protein folding | 2.60E-02 |
| 118 | GO:0010311: lateral root formation | 2.60E-02 |
| 119 | GO:0009631: cold acclimation | 2.78E-02 |
| 120 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.94E-02 |
| 121 | GO:0009853: photorespiration | 2.97E-02 |
| 122 | GO:0030001: metal ion transport | 3.26E-02 |
| 123 | GO:0042542: response to hydrogen peroxide | 3.45E-02 |
| 124 | GO:0009744: response to sucrose | 3.55E-02 |
| 125 | GO:0008643: carbohydrate transport | 3.76E-02 |
| 126 | GO:0032259: methylation | 4.01E-02 |
| 127 | GO:0042538: hyperosmotic salinity response | 4.18E-02 |
| 128 | GO:0009585: red, far-red light phototransduction | 4.39E-02 |
| 129 | GO:0006813: potassium ion transport | 4.39E-02 |
| 130 | GO:0071555: cell wall organization | 4.52E-02 |
| 131 | GO:0006417: regulation of translation | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 8 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 10 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 11 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 12 | GO:0019843: rRNA binding | 3.30E-21 |
| 13 | GO:0003735: structural constituent of ribosome | 4.30E-15 |
| 14 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.78E-06 |
| 15 | GO:0016851: magnesium chelatase activity | 1.11E-05 |
| 16 | GO:0004176: ATP-dependent peptidase activity | 3.94E-05 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.28E-05 |
| 18 | GO:0004824: lysine-tRNA ligase activity | 1.62E-04 |
| 19 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.62E-04 |
| 20 | GO:0045485: omega-6 fatty acid desaturase activity | 1.62E-04 |
| 21 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.62E-04 |
| 22 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.62E-04 |
| 23 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.62E-04 |
| 24 | GO:0008237: metallopeptidase activity | 1.69E-04 |
| 25 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.86E-04 |
| 26 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.69E-04 |
| 27 | GO:0016630: protochlorophyllide reductase activity | 3.69E-04 |
| 28 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.69E-04 |
| 29 | GO:0004817: cysteine-tRNA ligase activity | 3.69E-04 |
| 30 | GO:0002161: aminoacyl-tRNA editing activity | 6.04E-04 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 6.04E-04 |
| 32 | GO:0005528: FK506 binding | 6.16E-04 |
| 33 | GO:0016887: ATPase activity | 7.98E-04 |
| 34 | GO:0035197: siRNA binding | 8.63E-04 |
| 35 | GO:0003999: adenine phosphoribosyltransferase activity | 8.63E-04 |
| 36 | GO:0004550: nucleoside diphosphate kinase activity | 8.63E-04 |
| 37 | GO:0043023: ribosomal large subunit binding | 8.63E-04 |
| 38 | GO:0008097: 5S rRNA binding | 8.63E-04 |
| 39 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 8.63E-04 |
| 40 | GO:0004812: aminoacyl-tRNA ligase activity | 1.03E-03 |
| 41 | GO:0052793: pectin acetylesterase activity | 1.14E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.14E-03 |
| 43 | GO:0004845: uracil phosphoribosyltransferase activity | 1.14E-03 |
| 44 | GO:0016836: hydro-lyase activity | 1.14E-03 |
| 45 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.14E-03 |
| 46 | GO:0004040: amidase activity | 1.45E-03 |
| 47 | GO:0003959: NADPH dehydrogenase activity | 1.45E-03 |
| 48 | GO:0004130: cytochrome-c peroxidase activity | 1.78E-03 |
| 49 | GO:0016208: AMP binding | 1.78E-03 |
| 50 | GO:0016688: L-ascorbate peroxidase activity | 1.78E-03 |
| 51 | GO:0004017: adenylate kinase activity | 2.14E-03 |
| 52 | GO:0004849: uridine kinase activity | 2.14E-03 |
| 53 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.14E-03 |
| 54 | GO:0004124: cysteine synthase activity | 2.14E-03 |
| 55 | GO:0005524: ATP binding | 3.63E-03 |
| 56 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.93E-03 |
| 57 | GO:0008047: enzyme activator activity | 4.69E-03 |
| 58 | GO:0043621: protein self-association | 4.81E-03 |
| 59 | GO:0051287: NAD binding | 5.38E-03 |
| 60 | GO:0000049: tRNA binding | 5.69E-03 |
| 61 | GO:0004521: endoribonuclease activity | 5.69E-03 |
| 62 | GO:0015114: phosphate ion transmembrane transporter activity | 6.22E-03 |
| 63 | GO:0004565: beta-galactosidase activity | 6.22E-03 |
| 64 | GO:0008081: phosphoric diester hydrolase activity | 6.22E-03 |
| 65 | GO:0009982: pseudouridine synthase activity | 6.22E-03 |
| 66 | GO:0003777: microtubule motor activity | 6.63E-03 |
| 67 | GO:0008266: poly(U) RNA binding | 6.76E-03 |
| 68 | GO:0042803: protein homodimerization activity | 7.38E-03 |
| 69 | GO:0008324: cation transmembrane transporter activity | 9.09E-03 |
| 70 | GO:0051087: chaperone binding | 9.09E-03 |
| 71 | GO:0004707: MAP kinase activity | 9.72E-03 |
| 72 | GO:0008810: cellulase activity | 1.10E-02 |
| 73 | GO:0003727: single-stranded RNA binding | 1.17E-02 |
| 74 | GO:0008514: organic anion transmembrane transporter activity | 1.17E-02 |
| 75 | GO:0047134: protein-disulfide reductase activity | 1.24E-02 |
| 76 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 77 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.38E-02 |
| 78 | GO:0004791: thioredoxin-disulfide reductase activity | 1.45E-02 |
| 79 | GO:0008017: microtubule binding | 1.55E-02 |
| 80 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.75E-02 |
| 81 | GO:0051015: actin filament binding | 1.75E-02 |
| 82 | GO:0016491: oxidoreductase activity | 1.95E-02 |
| 83 | GO:0008168: methyltransferase activity | 2.21E-02 |
| 84 | GO:0016740: transferase activity | 2.41E-02 |
| 85 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.42E-02 |
| 86 | GO:0008236: serine-type peptidase activity | 2.42E-02 |
| 87 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.66E-02 |
| 88 | GO:0004222: metalloendopeptidase activity | 2.69E-02 |
| 89 | GO:0030246: carbohydrate binding | 2.73E-02 |
| 90 | GO:0005507: copper ion binding | 2.93E-02 |
| 91 | GO:0050661: NADP binding | 3.26E-02 |
| 92 | GO:0005525: GTP binding | 3.50E-02 |
| 93 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.76E-02 |
| 94 | GO:0003924: GTPase activity | 4.18E-02 |
| 95 | GO:0003690: double-stranded DNA binding | 4.50E-02 |
| 96 | GO:0015171: amino acid transmembrane transporter activity | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 4.84E-38 |
| 2 | GO:0009507: chloroplast | 1.13E-36 |
| 3 | GO:0009941: chloroplast envelope | 2.42E-32 |
| 4 | GO:0005840: ribosome | 5.72E-15 |
| 5 | GO:0009579: thylakoid | 6.02E-13 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.33E-10 |
| 7 | GO:0009534: chloroplast thylakoid | 3.39E-09 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.55E-08 |
| 9 | GO:0031977: thylakoid lumen | 5.36E-08 |
| 10 | GO:0010007: magnesium chelatase complex | 4.78E-06 |
| 11 | GO:0000311: plastid large ribosomal subunit | 1.07E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.62E-04 |
| 13 | GO:0009515: granal stacked thylakoid | 1.62E-04 |
| 14 | GO:0009547: plastid ribosome | 1.62E-04 |
| 15 | GO:0016020: membrane | 2.60E-04 |
| 16 | GO:0008290: F-actin capping protein complex | 3.69E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 4.47E-04 |
| 18 | GO:0009509: chromoplast | 6.04E-04 |
| 19 | GO:0005719: nuclear euchromatin | 8.63E-04 |
| 20 | GO:0022626: cytosolic ribosome | 9.34E-04 |
| 21 | GO:0031969: chloroplast membrane | 1.03E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 1.21E-03 |
| 23 | GO:0009536: plastid | 1.34E-03 |
| 24 | GO:0031209: SCAR complex | 1.78E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 3.77E-03 |
| 26 | GO:0015030: Cajal body | 4.22E-03 |
| 27 | GO:0005884: actin filament | 5.19E-03 |
| 28 | GO:0022625: cytosolic large ribosomal subunit | 5.90E-03 |
| 29 | GO:0009654: photosystem II oxygen evolving complex | 9.09E-03 |
| 30 | GO:0042651: thylakoid membrane | 9.09E-03 |
| 31 | GO:0015935: small ribosomal subunit | 9.72E-03 |
| 32 | GO:0005871: kinesin complex | 1.24E-02 |
| 33 | GO:0005618: cell wall | 1.34E-02 |
| 34 | GO:0009523: photosystem II | 1.52E-02 |
| 35 | GO:0019898: extrinsic component of membrane | 1.52E-02 |
| 36 | GO:0009505: plant-type cell wall | 1.81E-02 |
| 37 | GO:0005778: peroxisomal membrane | 1.91E-02 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 2.07E-02 |
| 39 | GO:0009707: chloroplast outer membrane | 2.51E-02 |
| 40 | GO:0005874: microtubule | 2.75E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.78E-02 |
| 42 | GO:0005819: spindle | 3.16E-02 |
| 43 | GO:0048046: apoplast | 3.20E-02 |
| 44 | GO:0005802: trans-Golgi network | 3.39E-02 |
| 45 | GO:0005768: endosome | 3.97E-02 |