GO Enrichment Analysis of Co-expressed Genes with
AT3G43540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0099131: ATP hydrolysis coupled ion transmembrane transport | 0.00E+00 |
| 4 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 8 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 9 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 10 | GO:0071482: cellular response to light stimulus | 9.71E-07 |
| 11 | GO:0006000: fructose metabolic process | 2.36E-06 |
| 12 | GO:0042549: photosystem II stabilization | 2.64E-05 |
| 13 | GO:0010196: nonphotochemical quenching | 5.05E-05 |
| 14 | GO:0009704: de-etiolation | 6.58E-05 |
| 15 | GO:0006002: fructose 6-phosphate metabolic process | 8.31E-05 |
| 16 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.10E-04 |
| 17 | GO:0043609: regulation of carbon utilization | 1.10E-04 |
| 18 | GO:0071277: cellular response to calcium ion | 1.10E-04 |
| 19 | GO:0006352: DNA-templated transcription, initiation | 1.73E-04 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 1.73E-04 |
| 21 | GO:0006094: gluconeogenesis | 2.30E-04 |
| 22 | GO:0009767: photosynthetic electron transport chain | 2.30E-04 |
| 23 | GO:0005986: sucrose biosynthetic process | 2.30E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 2.57E-04 |
| 25 | GO:0009662: etioplast organization | 2.57E-04 |
| 26 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.57E-04 |
| 27 | GO:0034755: iron ion transmembrane transport | 2.57E-04 |
| 28 | GO:0071457: cellular response to ozone | 2.57E-04 |
| 29 | GO:0010207: photosystem II assembly | 2.61E-04 |
| 30 | GO:0009658: chloroplast organization | 3.25E-04 |
| 31 | GO:0045910: negative regulation of DNA recombination | 4.25E-04 |
| 32 | GO:0016226: iron-sulfur cluster assembly | 4.85E-04 |
| 33 | GO:0015979: photosynthesis | 5.59E-04 |
| 34 | GO:0010731: protein glutathionylation | 6.10E-04 |
| 35 | GO:0055070: copper ion homeostasis | 6.10E-04 |
| 36 | GO:2001141: regulation of RNA biosynthetic process | 6.10E-04 |
| 37 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.10E-04 |
| 38 | GO:0071484: cellular response to light intensity | 6.10E-04 |
| 39 | GO:0009152: purine ribonucleotide biosynthetic process | 6.10E-04 |
| 40 | GO:0046653: tetrahydrofolate metabolic process | 6.10E-04 |
| 41 | GO:0016556: mRNA modification | 6.10E-04 |
| 42 | GO:0006546: glycine catabolic process | 8.10E-04 |
| 43 | GO:0071483: cellular response to blue light | 8.10E-04 |
| 44 | GO:0071486: cellular response to high light intensity | 8.10E-04 |
| 45 | GO:0006109: regulation of carbohydrate metabolic process | 8.10E-04 |
| 46 | GO:0006564: L-serine biosynthetic process | 1.02E-03 |
| 47 | GO:0035434: copper ion transmembrane transport | 1.02E-03 |
| 48 | GO:0009107: lipoate biosynthetic process | 1.02E-03 |
| 49 | GO:0071493: cellular response to UV-B | 1.02E-03 |
| 50 | GO:0000470: maturation of LSU-rRNA | 1.25E-03 |
| 51 | GO:0006458: 'de novo' protein folding | 1.49E-03 |
| 52 | GO:0010019: chloroplast-nucleus signaling pathway | 1.49E-03 |
| 53 | GO:0042026: protein refolding | 1.49E-03 |
| 54 | GO:0009645: response to low light intensity stimulus | 1.75E-03 |
| 55 | GO:0048564: photosystem I assembly | 2.03E-03 |
| 56 | GO:0009642: response to light intensity | 2.03E-03 |
| 57 | GO:0019430: removal of superoxide radicals | 2.32E-03 |
| 58 | GO:0010206: photosystem II repair | 2.62E-03 |
| 59 | GO:0090333: regulation of stomatal closure | 2.62E-03 |
| 60 | GO:0000373: Group II intron splicing | 2.62E-03 |
| 61 | GO:0006098: pentose-phosphate shunt | 2.62E-03 |
| 62 | GO:0006298: mismatch repair | 3.25E-03 |
| 63 | GO:0045454: cell redox homeostasis | 3.51E-03 |
| 64 | GO:0009073: aromatic amino acid family biosynthetic process | 3.59E-03 |
| 65 | GO:0043085: positive regulation of catalytic activity | 3.59E-03 |
| 66 | GO:0006879: cellular iron ion homeostasis | 3.59E-03 |
| 67 | GO:0009750: response to fructose | 3.59E-03 |
| 68 | GO:0005983: starch catabolic process | 3.93E-03 |
| 69 | GO:0055114: oxidation-reduction process | 3.99E-03 |
| 70 | GO:0010628: positive regulation of gene expression | 4.30E-03 |
| 71 | GO:0032259: methylation | 4.33E-03 |
| 72 | GO:0090351: seedling development | 5.04E-03 |
| 73 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.25E-03 |
| 74 | GO:0016575: histone deacetylation | 6.25E-03 |
| 75 | GO:0061077: chaperone-mediated protein folding | 6.67E-03 |
| 76 | GO:0016117: carotenoid biosynthetic process | 8.46E-03 |
| 77 | GO:0009451: RNA modification | 8.79E-03 |
| 78 | GO:0006662: glycerol ether metabolic process | 9.41E-03 |
| 79 | GO:0071472: cellular response to salt stress | 9.41E-03 |
| 80 | GO:0006814: sodium ion transport | 9.91E-03 |
| 81 | GO:0001666: response to hypoxia | 1.42E-02 |
| 82 | GO:0010027: thylakoid membrane organization | 1.42E-02 |
| 83 | GO:0042128: nitrate assimilation | 1.53E-02 |
| 84 | GO:0016311: dephosphorylation | 1.65E-02 |
| 85 | GO:0018298: protein-chromophore linkage | 1.71E-02 |
| 86 | GO:0006499: N-terminal protein myristoylation | 1.83E-02 |
| 87 | GO:0009637: response to blue light | 2.02E-02 |
| 88 | GO:0009853: photorespiration | 2.02E-02 |
| 89 | GO:0034599: cellular response to oxidative stress | 2.09E-02 |
| 90 | GO:0030001: metal ion transport | 2.22E-02 |
| 91 | GO:0010114: response to red light | 2.42E-02 |
| 92 | GO:0009644: response to high light intensity | 2.56E-02 |
| 93 | GO:0009636: response to toxic substance | 2.63E-02 |
| 94 | GO:0008152: metabolic process | 2.70E-02 |
| 95 | GO:0006855: drug transmembrane transport | 2.70E-02 |
| 96 | GO:0006364: rRNA processing | 2.99E-02 |
| 97 | GO:0006417: regulation of translation | 3.22E-02 |
| 98 | GO:0006096: glycolytic process | 3.37E-02 |
| 99 | GO:0043086: negative regulation of catalytic activity | 3.37E-02 |
| 100 | GO:0006810: transport | 3.73E-02 |
| 101 | GO:0009735: response to cytokinin | 3.96E-02 |
| 102 | GO:0009058: biosynthetic process | 4.69E-02 |
| 103 | GO:0045893: positive regulation of transcription, DNA-templated | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 2 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 8 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 9 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 10 | GO:0001053: plastid sigma factor activity | 1.06E-05 |
| 11 | GO:0016987: sigma factor activity | 1.06E-05 |
| 12 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.10E-04 |
| 13 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.10E-04 |
| 14 | GO:0070006: metalloaminopeptidase activity | 1.10E-04 |
| 15 | GO:0005080: protein kinase C binding | 1.10E-04 |
| 16 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.10E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.57E-04 |
| 18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.57E-04 |
| 19 | GO:0051536: iron-sulfur cluster binding | 3.65E-04 |
| 20 | GO:0005528: FK506 binding | 3.65E-04 |
| 21 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 4.25E-04 |
| 22 | GO:0050307: sucrose-phosphate phosphatase activity | 4.25E-04 |
| 23 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.25E-04 |
| 24 | GO:0070402: NADPH binding | 4.25E-04 |
| 25 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.25E-04 |
| 26 | GO:0016531: copper chaperone activity | 4.25E-04 |
| 27 | GO:0019829: cation-transporting ATPase activity | 4.25E-04 |
| 28 | GO:0016992: lipoate synthase activity | 4.25E-04 |
| 29 | GO:0032947: protein complex scaffold | 4.25E-04 |
| 30 | GO:0048487: beta-tubulin binding | 6.10E-04 |
| 31 | GO:0008508: bile acid:sodium symporter activity | 6.10E-04 |
| 32 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.10E-04 |
| 33 | GO:0004519: endonuclease activity | 9.34E-04 |
| 34 | GO:2001070: starch binding | 1.25E-03 |
| 35 | GO:0030983: mismatched DNA binding | 1.25E-03 |
| 36 | GO:0004332: fructose-bisphosphate aldolase activity | 1.25E-03 |
| 37 | GO:0004784: superoxide dismutase activity | 1.25E-03 |
| 38 | GO:0043022: ribosome binding | 2.03E-03 |
| 39 | GO:0008168: methyltransferase activity | 2.03E-03 |
| 40 | GO:0004033: aldo-keto reductase (NADP) activity | 2.03E-03 |
| 41 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.32E-03 |
| 42 | GO:0005375: copper ion transmembrane transporter activity | 2.32E-03 |
| 43 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.82E-03 |
| 44 | GO:0005381: iron ion transmembrane transporter activity | 2.93E-03 |
| 45 | GO:0005198: structural molecule activity | 2.93E-03 |
| 46 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.04E-03 |
| 47 | GO:0008047: enzyme activator activity | 3.25E-03 |
| 48 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-03 |
| 49 | GO:0004177: aminopeptidase activity | 3.59E-03 |
| 50 | GO:0044183: protein binding involved in protein folding | 3.59E-03 |
| 51 | GO:0015386: potassium:proton antiporter activity | 3.59E-03 |
| 52 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.30E-03 |
| 53 | GO:0031072: heat shock protein binding | 4.30E-03 |
| 54 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.30E-03 |
| 55 | GO:0051082: unfolded protein binding | 4.98E-03 |
| 56 | GO:0031409: pigment binding | 5.44E-03 |
| 57 | GO:0004857: enzyme inhibitor activity | 5.84E-03 |
| 58 | GO:0004407: histone deacetylase activity | 5.84E-03 |
| 59 | GO:0003723: RNA binding | 6.08E-03 |
| 60 | GO:0015079: potassium ion transmembrane transporter activity | 6.25E-03 |
| 61 | GO:0047134: protein-disulfide reductase activity | 8.46E-03 |
| 62 | GO:0004791: thioredoxin-disulfide reductase activity | 9.91E-03 |
| 63 | GO:0048038: quinone binding | 1.09E-02 |
| 64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.20E-02 |
| 65 | GO:0003684: damaged DNA binding | 1.25E-02 |
| 66 | GO:0000287: magnesium ion binding | 1.31E-02 |
| 67 | GO:0016597: amino acid binding | 1.36E-02 |
| 68 | GO:0016168: chlorophyll binding | 1.47E-02 |
| 69 | GO:0046872: metal ion binding | 1.50E-02 |
| 70 | GO:0004721: phosphoprotein phosphatase activity | 1.59E-02 |
| 71 | GO:0008236: serine-type peptidase activity | 1.65E-02 |
| 72 | GO:0015238: drug transmembrane transporter activity | 1.77E-02 |
| 73 | GO:0004364: glutathione transferase activity | 2.35E-02 |
| 74 | GO:0043621: protein self-association | 2.56E-02 |
| 75 | GO:0005215: transporter activity | 2.62E-02 |
| 76 | GO:0009055: electron carrier activity | 2.63E-02 |
| 77 | GO:0051287: NAD binding | 2.77E-02 |
| 78 | GO:0016491: oxidoreductase activity | 3.26E-02 |
| 79 | GO:0016874: ligase activity | 3.69E-02 |
| 80 | GO:0015035: protein disulfide oxidoreductase activity | 3.93E-02 |
| 81 | GO:0019843: rRNA binding | 4.51E-02 |
| 82 | GO:0004252: serine-type endopeptidase activity | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.42E-34 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.44E-15 |
| 5 | GO:0009534: chloroplast thylakoid | 1.47E-14 |
| 6 | GO:0009941: chloroplast envelope | 6.73E-13 |
| 7 | GO:0009570: chloroplast stroma | 9.88E-12 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.09E-07 |
| 9 | GO:0009579: thylakoid | 8.39E-07 |
| 10 | GO:0031969: chloroplast membrane | 5.49E-05 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.03E-04 |
| 12 | GO:0009782: photosystem I antenna complex | 1.10E-04 |
| 13 | GO:0031977: thylakoid lumen | 2.42E-04 |
| 14 | GO:0009512: cytochrome b6f complex | 1.02E-03 |
| 15 | GO:0030076: light-harvesting complex | 5.04E-03 |
| 16 | GO:0043231: intracellular membrane-bounded organelle | 5.18E-03 |
| 17 | GO:0010287: plastoglobule | 5.90E-03 |
| 18 | GO:0042651: thylakoid membrane | 6.25E-03 |
| 19 | GO:0009523: photosystem II | 1.04E-02 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 1.42E-02 |
| 21 | GO:0009707: chloroplast outer membrane | 1.71E-02 |
| 22 | GO:0009706: chloroplast inner membrane | 3.85E-02 |
| 23 | GO:0016020: membrane | 3.89E-02 |
| 24 | GO:0005623: cell | 4.60E-02 |