Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G42790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0051245: negative regulation of cellular defense response0.00E+00
4GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0080180: 2-methylguanosine metabolic process0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0048227: plasma membrane to endosome transport0.00E+00
9GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
10GO:0051553: flavone biosynthetic process0.00E+00
11GO:0042742: defense response to bacterium2.24E-10
12GO:0080142: regulation of salicylic acid biosynthetic process8.26E-10
13GO:0009617: response to bacterium2.20E-07
14GO:0043069: negative regulation of programmed cell death3.62E-07
15GO:0002221: pattern recognition receptor signaling pathway3.35E-06
16GO:0031349: positive regulation of defense response3.35E-06
17GO:0006468: protein phosphorylation4.01E-06
18GO:0072661: protein targeting to plasma membrane1.21E-05
19GO:1900426: positive regulation of defense response to bacterium1.65E-05
20GO:0006612: protein targeting to membrane2.72E-05
21GO:0052544: defense response by callose deposition in cell wall2.77E-05
22GO:0015031: protein transport3.37E-05
23GO:0006952: defense response4.61E-05
24GO:0060548: negative regulation of cell death4.90E-05
25GO:0010363: regulation of plant-type hypersensitive response4.90E-05
26GO:0009627: systemic acquired resistance5.33E-05
27GO:0042343: indole glucosinolate metabolic process6.27E-05
28GO:0070588: calcium ion transmembrane transport6.27E-05
29GO:0018344: protein geranylgeranylation7.79E-05
30GO:0010942: positive regulation of cell death1.13E-04
31GO:0009759: indole glucosinolate biosynthetic process1.13E-04
32GO:0031348: negative regulation of defense response1.34E-04
33GO:0006887: exocytosis1.51E-04
34GO:0009625: response to insect1.52E-04
35GO:0010150: leaf senescence1.99E-04
36GO:0070370: cellular heat acclimation2.04E-04
37GO:0061025: membrane fusion2.64E-04
38GO:0010266: response to vitamin B12.70E-04
39GO:0043547: positive regulation of GTPase activity2.70E-04
40GO:0006422: aspartyl-tRNA aminoacylation2.70E-04
41GO:1990022: RNA polymerase III complex localization to nucleus2.70E-04
42GO:0055081: anion homeostasis2.70E-04
43GO:1901183: positive regulation of camalexin biosynthetic process2.70E-04
44GO:0044376: RNA polymerase II complex import to nucleus2.70E-04
45GO:0060862: negative regulation of floral organ abscission2.70E-04
46GO:0009968: negative regulation of signal transduction2.70E-04
47GO:0000302: response to reactive oxygen species3.18E-04
48GO:0043562: cellular response to nitrogen levels3.19E-04
49GO:0009626: plant-type hypersensitive response4.16E-04
50GO:0009816: defense response to bacterium, incompatible interaction5.53E-04
51GO:0006906: vesicle fusion5.92E-04
52GO:0015914: phospholipid transport5.94E-04
53GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.94E-04
54GO:0080185: effector dependent induction by symbiont of host immune response5.94E-04
55GO:0010618: aerenchyma formation5.94E-04
56GO:0006212: uracil catabolic process5.94E-04
57GO:0019483: beta-alanine biosynthetic process5.94E-04
58GO:0010541: acropetal auxin transport5.94E-04
59GO:0008535: respiratory chain complex IV assembly5.94E-04
60GO:0009682: induced systemic resistance6.14E-04
61GO:0009737: response to abscisic acid6.76E-04
62GO:0002213: defense response to insect7.02E-04
63GO:0010105: negative regulation of ethylene-activated signaling pathway7.02E-04
64GO:0010200: response to chitin7.10E-04
65GO:0034605: cellular response to heat8.95E-04
66GO:0048281: inflorescence morphogenesis9.62E-04
67GO:0002230: positive regulation of defense response to virus by host9.62E-04
68GO:1900140: regulation of seedling development9.62E-04
69GO:0006886: intracellular protein transport9.68E-04
70GO:0009867: jasmonic acid mediated signaling pathway9.69E-04
71GO:0009414: response to water deprivation1.08E-03
72GO:0009863: salicylic acid mediated signaling pathway1.23E-03
73GO:0000187: activation of MAPK activity1.38E-03
74GO:0019438: aromatic compound biosynthetic process1.38E-03
75GO:0002239: response to oomycetes1.38E-03
76GO:0010148: transpiration1.38E-03
77GO:0048530: fruit morphogenesis1.38E-03
78GO:1902290: positive regulation of defense response to oomycetes1.38E-03
79GO:0007166: cell surface receptor signaling pathway1.41E-03
80GO:0048278: vesicle docking1.48E-03
81GO:0009814: defense response, incompatible interaction1.62E-03
82GO:2000022: regulation of jasmonic acid mediated signaling pathway1.62E-03
83GO:0006508: proteolysis1.73E-03
84GO:0010508: positive regulation of autophagy1.84E-03
85GO:0071219: cellular response to molecule of bacterial origin1.84E-03
86GO:2000038: regulation of stomatal complex development1.84E-03
87GO:0009306: protein secretion1.92E-03
88GO:0031365: N-terminal protein amino acid modification2.35E-03
89GO:0010225: response to UV-C2.35E-03
90GO:0006623: protein targeting to vacuole2.79E-03
91GO:0055114: oxidation-reduction process2.86E-03
92GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.90E-03
93GO:0002229: defense response to oomycetes2.98E-03
94GO:0007264: small GTPase mediated signal transduction3.18E-03
95GO:0016192: vesicle-mediated transport3.35E-03
96GO:0030163: protein catabolic process3.39E-03
97GO:2000037: regulation of stomatal complex patterning3.49E-03
98GO:0010310: regulation of hydrogen peroxide metabolic process3.49E-03
99GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.49E-03
100GO:0000911: cytokinesis by cell plate formation3.49E-03
101GO:0009612: response to mechanical stimulus3.49E-03
102GO:0006694: steroid biosynthetic process3.49E-03
103GO:0010199: organ boundary specification between lateral organs and the meristem3.49E-03
104GO:0006904: vesicle docking involved in exocytosis3.83E-03
105GO:0043090: amino acid import4.12E-03
106GO:1900057: positive regulation of leaf senescence4.12E-03
107GO:0006400: tRNA modification4.12E-03
108GO:0050832: defense response to fungus4.45E-03
109GO:0009787: regulation of abscisic acid-activated signaling pathway4.77E-03
110GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.77E-03
111GO:0009819: drought recovery4.77E-03
112GO:0030162: regulation of proteolysis4.77E-03
113GO:0030968: endoplasmic reticulum unfolded protein response5.47E-03
114GO:2000031: regulation of salicylic acid mediated signaling pathway5.47E-03
115GO:0009699: phenylpropanoid biosynthetic process5.47E-03
116GO:0010120: camalexin biosynthetic process5.47E-03
117GO:0008219: cell death5.61E-03
118GO:0009817: defense response to fungus, incompatible interaction5.61E-03
119GO:0009813: flavonoid biosynthetic process5.89E-03
120GO:0006499: N-terminal protein myristoylation6.19E-03
121GO:0009407: toxin catabolic process6.19E-03
122GO:0010112: regulation of systemic acquired resistance6.20E-03
123GO:0010119: regulation of stomatal movement6.49E-03
124GO:0048268: clathrin coat assembly6.96E-03
125GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.96E-03
126GO:0000103: sulfate assimilation7.75E-03
127GO:0030148: sphingolipid biosynthetic process8.58E-03
128GO:0046686: response to cadmium ion9.08E-03
129GO:0051707: response to other organism9.18E-03
130GO:0010229: inflorescence development1.03E-02
131GO:0009636: response to toxic substance1.03E-02
132GO:0006970: response to osmotic stress1.17E-02
133GO:0000162: tryptophan biosynthetic process1.32E-02
134GO:0080167: response to karrikin1.40E-02
135GO:2000377: regulation of reactive oxygen species metabolic process1.42E-02
136GO:0000027: ribosomal large subunit assembly1.42E-02
137GO:0080147: root hair cell development1.42E-02
138GO:0016575: histone deacetylation1.52E-02
139GO:0009651: response to salt stress1.55E-02
140GO:0044550: secondary metabolite biosynthetic process1.55E-02
141GO:0009620: response to fungus1.62E-02
142GO:0098542: defense response to other organism1.62E-02
143GO:0071456: cellular response to hypoxia1.73E-02
144GO:0010227: floral organ abscission1.84E-02
145GO:0006012: galactose metabolic process1.84E-02
146GO:0042127: regulation of cell proliferation1.95E-02
147GO:0009409: response to cold2.08E-02
148GO:0016310: phosphorylation2.17E-02
149GO:0042631: cellular response to water deprivation2.19E-02
150GO:0009751: response to salicylic acid2.24E-02
151GO:0010197: polar nucleus fusion2.31E-02
152GO:0010182: sugar mediated signaling pathway2.31E-02
153GO:0006662: glycerol ether metabolic process2.31E-02
154GO:0009646: response to absence of light2.43E-02
155GO:0009851: auxin biosynthetic process2.55E-02
156GO:0009749: response to glucose2.55E-02
157GO:0009790: embryo development2.59E-02
158GO:0009630: gravitropism2.81E-02
159GO:0019760: glucosinolate metabolic process3.07E-02
160GO:0000910: cytokinesis3.34E-02
161GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.42E-02
162GO:0001666: response to hypoxia3.48E-02
163GO:0006470: protein dephosphorylation3.50E-02
164GO:0009607: response to biotic stimulus3.63E-02
165GO:0007165: signal transduction4.26E-02
166GO:0010043: response to zinc ion4.66E-02
167GO:0007568: aging4.66E-02
168GO:0048527: lateral root development4.66E-02
169GO:0006865: amino acid transport4.82E-02
170GO:0035556: intracellular signal transduction4.95E-02
171GO:0045087: innate immune response4.97E-02
RankGO TermAdjusted P value
1GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
2GO:0033759: flavone synthase activity0.00E+00
3GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
4GO:0005092: GDP-dissociation inhibitor activity0.00E+00
5GO:0004157: dihydropyrimidinase activity0.00E+00
6GO:0016301: kinase activity1.37E-07
7GO:0005093: Rab GDP-dissociation inhibitor activity1.21E-05
8GO:0005524: ATP binding2.48E-05
9GO:0005516: calmodulin binding2.65E-05
10GO:0005388: calcium-transporting ATPase activity4.30E-05
11GO:0004190: aspartic-type endopeptidase activity6.27E-05
12GO:0004674: protein serine/threonine kinase activity9.86E-05
13GO:0005484: SNAP receptor activity1.74E-04
14GO:0043295: glutathione binding2.04E-04
15GO:0004714: transmembrane receptor protein tyrosine kinase activity2.58E-04
16GO:2001227: quercitrin binding2.70E-04
17GO:1901149: salicylic acid binding2.70E-04
18GO:0033984: indole-3-glycerol-phosphate lyase activity2.70E-04
19GO:0015085: calcium ion transmembrane transporter activity2.70E-04
20GO:0004815: aspartate-tRNA ligase activity2.70E-04
21GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.70E-04
22GO:2001147: camalexin binding2.70E-04
23GO:0004566: beta-glucuronidase activity5.94E-04
24GO:0038199: ethylene receptor activity5.94E-04
25GO:0045140: inositol phosphoceramide synthase activity5.94E-04
26GO:0005096: GTPase activator activity7.68E-04
27GO:0004672: protein kinase activity8.33E-04
28GO:0050897: cobalt ion binding8.65E-04
29GO:0008430: selenium binding9.62E-04
30GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity9.62E-04
31GO:0004148: dihydrolipoyl dehydrogenase activity9.62E-04
32GO:0004663: Rab geranylgeranyltransferase activity9.62E-04
33GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.04E-03
34GO:0000149: SNARE binding1.08E-03
35GO:0051740: ethylene binding1.38E-03
36GO:0016656: monodehydroascorbate reductase (NADH) activity1.38E-03
37GO:0033612: receptor serine/threonine kinase binding1.48E-03
38GO:0004834: tryptophan synthase activity1.84E-03
39GO:0043495: protein anchor1.84E-03
40GO:0004930: G-protein coupled receptor activity1.84E-03
41GO:0045431: flavonol synthase activity2.35E-03
42GO:0017137: Rab GTPase binding2.35E-03
43GO:0004040: amidase activity2.35E-03
44GO:0030976: thiamine pyrophosphate binding2.90E-03
45GO:0004029: aldehyde dehydrogenase (NAD) activity2.90E-03
46GO:0016746: transferase activity, transferring acyl groups3.15E-03
47GO:0004656: procollagen-proline 4-dioxygenase activity3.49E-03
48GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.83E-03
49GO:0008235: metalloexopeptidase activity4.12E-03
50GO:0008320: protein transmembrane transporter activity4.12E-03
51GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.59E-03
52GO:0004034: aldose 1-epimerase activity4.77E-03
53GO:0004033: aldo-keto reductase (NADP) activity4.77E-03
54GO:0052747: sinapyl alcohol dehydrogenase activity4.77E-03
55GO:0004708: MAP kinase kinase activity4.77E-03
56GO:0004683: calmodulin-dependent protein kinase activity5.06E-03
57GO:0004806: triglyceride lipase activity5.06E-03
58GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.47E-03
59GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.96E-03
60GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors7.11E-03
61GO:0008171: O-methyltransferase activity7.75E-03
62GO:0005545: 1-phosphatidylinositol binding7.75E-03
63GO:0004713: protein tyrosine kinase activity7.75E-03
64GO:0004673: protein histidine kinase activity7.75E-03
65GO:0004177: aminopeptidase activity8.58E-03
66GO:0004364: glutathione transferase activity8.81E-03
67GO:0045551: cinnamyl-alcohol dehydrogenase activity9.44E-03
68GO:0015095: magnesium ion transmembrane transporter activity1.03E-02
69GO:0000155: phosphorelay sensor kinase activity1.03E-02
70GO:0005506: iron ion binding1.21E-02
71GO:0003712: transcription cofactor activity1.22E-02
72GO:0005515: protein binding1.37E-02
73GO:0031418: L-ascorbic acid binding1.42E-02
74GO:0003954: NADH dehydrogenase activity1.42E-02
75GO:0004407: histone deacetylase activity1.42E-02
76GO:0004707: MAP kinase activity1.62E-02
77GO:0016491: oxidoreductase activity1.99E-02
78GO:0047134: protein-disulfide reductase activity2.07E-02
79GO:0019825: oxygen binding2.27E-02
80GO:0030276: clathrin binding2.31E-02
81GO:0008080: N-acetyltransferase activity2.31E-02
82GO:0004791: thioredoxin-disulfide reductase activity2.43E-02
83GO:0016853: isomerase activity2.43E-02
84GO:0004872: receptor activity2.55E-02
85GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.94E-02
86GO:0005509: calcium ion binding3.38E-02
87GO:0009931: calcium-dependent protein serine/threonine kinase activity3.77E-02
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.06E-02
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.21E-02
90GO:0008168: methyltransferase activity4.54E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane5.71E-11
2GO:0016021: integral component of membrane7.67E-08
3GO:0005968: Rab-protein geranylgeranyltransferase complex2.72E-05
4GO:0005789: endoplasmic reticulum membrane2.73E-04
5GO:0009504: cell plate2.90E-04
6GO:0017119: Golgi transport complex5.32E-04
7GO:0031304: intrinsic component of mitochondrial inner membrane5.94E-04
8GO:0005901: caveola5.94E-04
9GO:0005765: lysosomal membrane6.14E-04
10GO:0005783: endoplasmic reticulum9.69E-04
11GO:0031201: SNARE complex1.20E-03
12GO:0070062: extracellular exosome1.38E-03
13GO:0030658: transport vesicle membrane1.38E-03
14GO:0009898: cytoplasmic side of plasma membrane1.84E-03
15GO:0030660: Golgi-associated vesicle membrane1.84E-03
16GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.84E-03
17GO:0005887: integral component of plasma membrane2.26E-03
18GO:0000164: protein phosphatase type 1 complex2.35E-03
19GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.12E-03
20GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.77E-03
21GO:0005829: cytosol5.21E-03
22GO:0031901: early endosome membrane6.20E-03
23GO:0030665: clathrin-coated vesicle membrane6.96E-03
24GO:0005802: trans-Golgi network8.25E-03
25GO:0031902: late endosome membrane8.46E-03
26GO:0005769: early endosome1.32E-02
27GO:0005737: cytoplasm1.32E-02
28GO:0005905: clathrin-coated pit1.62E-02
29GO:0012505: endomembrane system1.72E-02
30GO:0030136: clathrin-coated vesicle2.07E-02
31GO:0019898: extrinsic component of membrane2.55E-02
32GO:0000145: exocyst2.81E-02
33GO:0032580: Golgi cisterna membrane3.07E-02
34GO:0005768: endosome3.26E-02
35GO:0019005: SCF ubiquitin ligase complex4.21E-02
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Gene type



Gene DE type