Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0070979: protein K11-linked ubiquitination0.00E+00
3GO:0009768: photosynthesis, light harvesting in photosystem I7.30E-13
4GO:0009645: response to low light intensity stimulus2.39E-09
5GO:0018298: protein-chromophore linkage9.50E-09
6GO:0009644: response to high light intensity3.57E-08
7GO:0015979: photosynthesis4.83E-08
8GO:0010600: regulation of auxin biosynthetic process2.56E-07
9GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.03E-06
10GO:0009769: photosynthesis, light harvesting in photosystem II1.45E-06
11GO:0010928: regulation of auxin mediated signaling pathway1.96E-06
12GO:0009416: response to light stimulus1.49E-05
13GO:0010017: red or far-red light signaling pathway2.22E-05
14GO:0031145: anaphase-promoting complex-dependent catabolic process5.78E-05
15GO:0030071: regulation of mitotic metaphase/anaphase transition8.79E-05
16GO:0044211: CTP salvage8.79E-05
17GO:0010218: response to far red light1.08E-04
18GO:0009765: photosynthesis, light harvesting1.22E-04
19GO:0044206: UMP salvage1.22E-04
20GO:0015846: polyamine transport1.22E-04
21GO:0030104: water homeostasis1.22E-04
22GO:0032876: negative regulation of DNA endoreduplication1.59E-04
23GO:0043097: pyrimidine nucleoside salvage1.59E-04
24GO:0010114: response to red light1.65E-04
25GO:0009635: response to herbicide1.98E-04
26GO:0006206: pyrimidine nucleobase metabolic process1.98E-04
27GO:0009585: red, far-red light phototransduction2.26E-04
28GO:0010161: red light signaling pathway2.82E-04
29GO:0009704: de-etiolation3.27E-04
30GO:0032875: regulation of DNA endoreduplication3.27E-04
31GO:0010099: regulation of photomorphogenesis3.73E-04
32GO:0009827: plant-type cell wall modification3.73E-04
33GO:0090333: regulation of stomatal closure4.21E-04
34GO:0048354: mucilage biosynthetic process involved in seed coat development4.69E-04
35GO:0009641: shade avoidance5.20E-04
36GO:0009718: anthocyanin-containing compound biosynthetic process6.76E-04
37GO:0009266: response to temperature stimulus7.31E-04
38GO:0009409: response to cold9.38E-04
39GO:0003333: amino acid transmembrane transport1.02E-03
40GO:0048511: rhythmic process1.02E-03
41GO:0009269: response to desiccation1.02E-03
42GO:0009693: ethylene biosynthetic process1.14E-03
43GO:0071215: cellular response to abscisic acid stimulus1.14E-03
44GO:0010087: phloem or xylem histogenesis1.34E-03
45GO:0006814: sodium ion transport1.47E-03
46GO:0015995: chlorophyll biosynthetic process2.30E-03
47GO:0000160: phosphorelay signal transduction system2.55E-03
48GO:0010119: regulation of stomatal movement2.71E-03
49GO:0009637: response to blue light2.89E-03
50GO:0008283: cell proliferation3.43E-03
51GO:0009909: regulation of flower development4.50E-03
52GO:0009624: response to nematode5.34E-03
53GO:0006355: regulation of transcription, DNA-templated5.82E-03
54GO:0009058: biosynthetic process6.47E-03
55GO:0007623: circadian rhythm7.79E-03
56GO:0006351: transcription, DNA-templated9.42E-03
57GO:0009658: chloroplast organization1.06E-02
58GO:0009737: response to abscisic acid1.11E-02
59GO:0080167: response to karrikin1.23E-02
60GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.26E-02
61GO:0016310: phosphorylation1.28E-02
62GO:0045892: negative regulation of transcription, DNA-templated1.41E-02
63GO:0006629: lipid metabolic process1.62E-02
64GO:0051301: cell division2.60E-02
65GO:0055085: transmembrane transport2.89E-02
66GO:0006457: protein folding2.94E-02
67GO:0006979: response to oxidative stress4.06E-02
RankGO TermAdjusted P value
1GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
2GO:0031409: pigment binding3.94E-13
3GO:0016168: chlorophyll binding2.70E-11
4GO:0015203: polyamine transmembrane transporter activity8.79E-05
5GO:0004845: uracil phosphoribosyltransferase activity1.22E-04
6GO:0015293: symporter activity1.87E-04
7GO:0004849: uridine kinase activity2.39E-04
8GO:0000989: transcription factor activity, transcription factor binding4.21E-04
9GO:0015174: basic amino acid transmembrane transporter activity4.69E-04
10GO:0047372: acylglycerol lipase activity5.71E-04
11GO:0004022: alcohol dehydrogenase (NAD) activity6.76E-04
12GO:0005315: inorganic phosphate transmembrane transporter activity6.76E-04
13GO:0004565: beta-galactosidase activity6.76E-04
14GO:0008514: organic anion transmembrane transporter activity1.21E-03
15GO:0000156: phosphorelay response regulator activity1.76E-03
16GO:0005198: structural molecule activity3.71E-03
17GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.35E-03
18GO:0046983: protein dimerization activity6.96E-03
19GO:0015144: carbohydrate transmembrane transporter activity7.06E-03
20GO:0015297: antiporter activity7.55E-03
21GO:0005351: sugar:proton symporter activity7.67E-03
22GO:0008270: zinc ion binding9.73E-03
23GO:0005515: protein binding1.01E-02
24GO:0004497: monooxygenase activity1.23E-02
25GO:0003924: GTPase activity1.62E-02
26GO:0046872: metal ion binding1.70E-02
27GO:0004519: endonuclease activity1.72E-02
28GO:0003700: transcription factor activity, sequence-specific DNA binding3.08E-02
29GO:0019825: oxygen binding3.14E-02
30GO:0005525: GTP binding3.48E-02
31GO:0005506: iron ion binding3.99E-02
32GO:0003824: catalytic activity4.32E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex2.82E-13
2GO:0009522: photosystem I1.53E-09
3GO:0010287: plastoglobule1.99E-09
4GO:0009579: thylakoid1.70E-08
5GO:0009523: photosystem II3.73E-07
6GO:0009534: chloroplast thylakoid7.42E-07
7GO:0009535: chloroplast thylakoid membrane1.05E-06
8GO:0009941: chloroplast envelope1.07E-04
9GO:0009517: PSII associated light-harvesting complex II1.22E-04
10GO:0005680: anaphase-promoting complex4.21E-04
11GO:0016604: nuclear body4.69E-04
12GO:0042651: thylakoid membrane9.61E-04
13GO:0005774: vacuolar membrane3.03E-03
14GO:0016021: integral component of membrane4.12E-03
15GO:0016607: nuclear speck4.81E-03
16GO:0016020: membrane8.65E-03
17GO:0005887: integral component of plasma membrane2.02E-02
18GO:0009507: chloroplast3.38E-02
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Gene type



Gene DE type