Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070212: protein poly-ADP-ribosylation0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0006793: phosphorus metabolic process0.00E+00
4GO:0036503: ERAD pathway0.00E+00
5GO:0072722: response to amitrole0.00E+00
6GO:0009617: response to bacterium2.54E-10
7GO:0042742: defense response to bacterium8.53E-09
8GO:0010200: response to chitin5.41E-08
9GO:0006979: response to oxidative stress8.20E-07
10GO:0009816: defense response to bacterium, incompatible interaction1.41E-06
11GO:0010112: regulation of systemic acquired resistance9.06E-06
12GO:0009751: response to salicylic acid2.80E-05
13GO:0002237: response to molecule of bacterial origin3.98E-05
14GO:0009697: salicylic acid biosynthetic process6.36E-05
15GO:0009863: salicylic acid mediated signaling pathway6.71E-05
16GO:0006952: defense response7.55E-05
17GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.29E-04
18GO:0030026: cellular manganese ion homeostasis1.69E-04
19GO:0030091: protein repair2.16E-04
20GO:0006047: UDP-N-acetylglucosamine metabolic process2.39E-04
21GO:0009700: indole phytoalexin biosynthetic process2.39E-04
22GO:0046244: salicylic acid catabolic process2.39E-04
23GO:0050691: regulation of defense response to virus by host2.39E-04
24GO:0019276: UDP-N-acetylgalactosamine metabolic process2.39E-04
25GO:0010193: response to ozone2.51E-04
26GO:0010120: camalexin biosynthetic process2.67E-04
27GO:0006468: protein phosphorylation2.81E-04
28GO:0009626: plant-type hypersensitive response3.14E-04
29GO:0009620: response to fungus3.30E-04
30GO:0009615: response to virus4.11E-04
31GO:0044419: interspecies interaction between organisms5.29E-04
32GO:0051592: response to calcium ion5.29E-04
33GO:0071395: cellular response to jasmonic acid stimulus5.29E-04
34GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.29E-04
35GO:0009838: abscission5.29E-04
36GO:0055114: oxidation-reduction process6.59E-04
37GO:0009611: response to wounding6.95E-04
38GO:0010581: regulation of starch biosynthetic process8.60E-04
39GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway8.60E-04
40GO:0006048: UDP-N-acetylglucosamine biosynthetic process8.60E-04
41GO:0055074: calcium ion homeostasis8.60E-04
42GO:0006556: S-adenosylmethionine biosynthetic process8.60E-04
43GO:0034051: negative regulation of plant-type hypersensitive response8.60E-04
44GO:0010351: lithium ion transport8.60E-04
45GO:0006011: UDP-glucose metabolic process8.60E-04
46GO:0010272: response to silver ion8.60E-04
47GO:0042542: response to hydrogen peroxide1.01E-03
48GO:0006457: protein folding1.11E-03
49GO:0006874: cellular calcium ion homeostasis1.14E-03
50GO:0002239: response to oomycetes1.23E-03
51GO:0030100: regulation of endocytosis1.23E-03
52GO:0006882: cellular zinc ion homeostasis1.23E-03
53GO:0046836: glycolipid transport1.23E-03
54GO:0019438: aromatic compound biosynthetic process1.23E-03
55GO:0071456: cellular response to hypoxia1.36E-03
56GO:0009651: response to salt stress1.37E-03
57GO:0009409: response to cold1.48E-03
58GO:0010224: response to UV-B1.62E-03
59GO:0045088: regulation of innate immune response1.64E-03
60GO:0006621: protein retention in ER lumen1.64E-03
61GO:0080142: regulation of salicylic acid biosynthetic process1.64E-03
62GO:0080037: negative regulation of cytokinin-activated signaling pathway1.64E-03
63GO:0034052: positive regulation of plant-type hypersensitive response2.09E-03
64GO:0000304: response to singlet oxygen2.09E-03
65GO:2000762: regulation of phenylpropanoid metabolic process2.09E-03
66GO:0045487: gibberellin catabolic process2.09E-03
67GO:0046283: anthocyanin-containing compound metabolic process2.09E-03
68GO:0006891: intra-Golgi vesicle-mediated transport2.50E-03
69GO:0009643: photosynthetic acclimation2.57E-03
70GO:0071281: cellular response to iron ion2.85E-03
71GO:0009094: L-phenylalanine biosynthetic process3.09E-03
72GO:0010555: response to mannitol3.09E-03
73GO:2000067: regulation of root morphogenesis3.09E-03
74GO:0071446: cellular response to salicylic acid stimulus3.64E-03
75GO:0019745: pentacyclic triterpenoid biosynthetic process3.64E-03
76GO:0050829: defense response to Gram-negative bacterium3.64E-03
77GO:0006880: intracellular sequestering of iron ion3.64E-03
78GO:0009737: response to abscisic acid4.00E-03
79GO:0009627: systemic acquired resistance4.03E-03
80GO:0030162: regulation of proteolysis4.23E-03
81GO:1900150: regulation of defense response to fungus4.23E-03
82GO:0031540: regulation of anthocyanin biosynthetic process4.23E-03
83GO:0006102: isocitrate metabolic process4.23E-03
84GO:0007186: G-protein coupled receptor signaling pathway4.84E-03
85GO:0010497: plasmodesmata-mediated intercellular transport4.84E-03
86GO:0010204: defense response signaling pathway, resistance gene-independent4.84E-03
87GO:0043562: cellular response to nitrogen levels4.84E-03
88GO:0009699: phenylpropanoid biosynthetic process4.84E-03
89GO:0010150: leaf senescence4.85E-03
90GO:0007568: aging5.43E-03
91GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process5.60E-03
92GO:2000280: regulation of root development6.15E-03
93GO:0006099: tricarboxylic acid cycle6.23E-03
94GO:0055062: phosphate ion homeostasis6.85E-03
95GO:0007064: mitotic sister chromatid cohesion6.85E-03
96GO:0009870: defense response signaling pathway, resistance gene-dependent6.85E-03
97GO:0006032: chitin catabolic process6.85E-03
98GO:0009682: induced systemic resistance7.58E-03
99GO:0015770: sucrose transport7.58E-03
100GO:0072593: reactive oxygen species metabolic process7.58E-03
101GO:0009073: aromatic amino acid family biosynthetic process7.58E-03
102GO:0000272: polysaccharide catabolic process7.58E-03
103GO:0009750: response to fructose7.58E-03
104GO:0051707: response to other organism7.68E-03
105GO:0006790: sulfur compound metabolic process8.33E-03
106GO:0002213: defense response to insect8.33E-03
107GO:0015706: nitrate transport8.33E-03
108GO:0009636: response to toxic substance8.64E-03
109GO:0006855: drug transmembrane transport8.97E-03
110GO:0010075: regulation of meristem growth9.11E-03
111GO:0031347: regulation of defense response9.31E-03
112GO:0010143: cutin biosynthetic process9.92E-03
113GO:0009887: animal organ morphogenesis9.92E-03
114GO:0009934: regulation of meristem structural organization9.92E-03
115GO:0042343: indole glucosinolate metabolic process1.07E-02
116GO:0010167: response to nitrate1.07E-02
117GO:0070588: calcium ion transmembrane transport1.07E-02
118GO:0046854: phosphatidylinositol phosphorylation1.07E-02
119GO:0080167: response to karrikin1.11E-02
120GO:0007165: signal transduction1.13E-02
121GO:0000162: tryptophan biosynthetic process1.16E-02
122GO:0034976: response to endoplasmic reticulum stress1.16E-02
123GO:0010025: wax biosynthetic process1.16E-02
124GO:0009695: jasmonic acid biosynthetic process1.34E-02
125GO:0003333: amino acid transmembrane transport1.43E-02
126GO:0016998: cell wall macromolecule catabolic process1.43E-02
127GO:0098542: defense response to other organism1.43E-02
128GO:0009624: response to nematode1.48E-02
129GO:0009814: defense response, incompatible interaction1.53E-02
130GO:0035428: hexose transmembrane transport1.53E-02
131GO:0006730: one-carbon metabolic process1.53E-02
132GO:0031348: negative regulation of defense response1.53E-02
133GO:0019748: secondary metabolic process1.53E-02
134GO:0009693: ethylene biosynthetic process1.62E-02
135GO:0009686: gibberellin biosynthetic process1.62E-02
136GO:0009411: response to UV1.62E-02
137GO:0009625: response to insect1.62E-02
138GO:0009306: protein secretion1.72E-02
139GO:0042391: regulation of membrane potential1.93E-02
140GO:0046686: response to cadmium ion1.95E-02
141GO:0009845: seed germination2.01E-02
142GO:0046323: glucose import2.03E-02
143GO:0009741: response to brassinosteroid2.03E-02
144GO:0048544: recognition of pollen2.14E-02
145GO:0006814: sodium ion transport2.14E-02
146GO:0009749: response to glucose2.25E-02
147GO:0002229: defense response to oomycetes2.36E-02
148GO:0000302: response to reactive oxygen species2.36E-02
149GO:0009639: response to red or far red light2.71E-02
150GO:0007166: cell surface receptor signaling pathway2.93E-02
151GO:0051607: defense response to virus2.95E-02
152GO:0042128: nitrate assimilation3.32E-02
153GO:0016311: dephosphorylation3.58E-02
154GO:0008219: cell death3.71E-02
155GO:0009407: toxin catabolic process3.97E-02
156GO:0048527: lateral root development4.11E-02
157GO:0009631: cold acclimation4.11E-02
158GO:0006865: amino acid transport4.25E-02
159GO:0009867: jasmonic acid mediated signaling pathway4.39E-02
160GO:0045087: innate immune response4.39E-02
161GO:0006839: mitochondrial transport4.81E-02
162GO:0006631: fatty acid metabolic process4.95E-02
163GO:0006897: endocytosis4.95E-02
RankGO TermAdjusted P value
1GO:0051670: inulinase activity0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0052873: FMN reductase (NADPH) activity0.00E+00
5GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
6GO:0005046: KDEL sequence binding0.00E+00
7GO:0008752: FMN reductase activity0.00E+00
8GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
9GO:0005524: ATP binding3.65E-05
10GO:0051082: unfolded protein binding4.25E-05
11GO:0047631: ADP-ribose diphosphatase activity6.36E-05
12GO:0000210: NAD+ diphosphatase activity9.33E-05
13GO:0016301: kinase activity1.11E-04
14GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.29E-04
15GO:0004674: protein serine/threonine kinase activity1.64E-04
16GO:0080042: ADP-glucose pyrophosphohydrolase activity2.39E-04
17GO:0051669: fructan beta-fructosidase activity2.39E-04
18GO:0004048: anthranilate phosphoribosyltransferase activity2.39E-04
19GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.39E-04
20GO:0031957: very long-chain fatty acid-CoA ligase activity2.39E-04
21GO:0031219: levanase activity2.39E-04
22GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.39E-04
23GO:0017110: nucleoside-diphosphatase activity5.29E-04
24GO:0004775: succinate-CoA ligase (ADP-forming) activity5.29E-04
25GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity5.29E-04
26GO:0050736: O-malonyltransferase activity5.29E-04
27GO:0004776: succinate-CoA ligase (GDP-forming) activity5.29E-04
28GO:0004103: choline kinase activity5.29E-04
29GO:0045543: gibberellin 2-beta-dioxygenase activity5.29E-04
30GO:0080041: ADP-ribose pyrophosphohydrolase activity5.29E-04
31GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.94E-04
32GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.60E-04
33GO:0031683: G-protein beta/gamma-subunit complex binding8.60E-04
34GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.60E-04
35GO:0046423: allene-oxide cyclase activity8.60E-04
36GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity8.60E-04
37GO:0004478: methionine adenosyltransferase activity8.60E-04
38GO:0001664: G-protein coupled receptor binding8.60E-04
39GO:0030246: carbohydrate binding1.19E-03
40GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.23E-03
41GO:0035529: NADH pyrophosphatase activity1.23E-03
42GO:0004449: isocitrate dehydrogenase (NAD+) activity1.23E-03
43GO:0042299: lupeol synthase activity1.23E-03
44GO:0017089: glycolipid transporter activity1.23E-03
45GO:0051287: NAD binding1.35E-03
46GO:0005516: calmodulin binding1.49E-03
47GO:0015369: calcium:proton antiporter activity1.64E-03
48GO:0046923: ER retention sequence binding1.64E-03
49GO:0016866: intramolecular transferase activity1.64E-03
50GO:0015368: calcium:cation antiporter activity1.64E-03
51GO:0047769: arogenate dehydratase activity1.64E-03
52GO:0004664: prephenate dehydratase activity1.64E-03
53GO:0051861: glycolipid binding1.64E-03
54GO:0015145: monosaccharide transmembrane transporter activity2.09E-03
55GO:0005509: calcium ion binding2.28E-03
56GO:0047714: galactolipase activity2.57E-03
57GO:0004029: aldehyde dehydrogenase (NAD) activity2.57E-03
58GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.09E-03
59GO:0102391: decanoate--CoA ligase activity3.09E-03
60GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.09E-03
61GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.50E-03
62GO:0008506: sucrose:proton symporter activity3.64E-03
63GO:0008121: ubiquinol-cytochrome-c reductase activity3.64E-03
64GO:0004467: long-chain fatty acid-CoA ligase activity3.64E-03
65GO:0043565: sequence-specific DNA binding4.04E-03
66GO:0008565: protein transporter activity4.05E-03
67GO:0015491: cation:cation antiporter activity4.23E-03
68GO:0004564: beta-fructofuranosidase activity4.23E-03
69GO:0009055: electron carrier activity4.76E-03
70GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.84E-03
71GO:0015238: drug transmembrane transporter activity4.94E-03
72GO:0046872: metal ion binding5.62E-03
73GO:0004575: sucrose alpha-glucosidase activity6.15E-03
74GO:0005381: iron ion transmembrane transporter activity6.15E-03
75GO:0005384: manganese ion transmembrane transporter activity6.15E-03
76GO:0015112: nitrate transmembrane transporter activity6.15E-03
77GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.15E-03
78GO:0004568: chitinase activity6.85E-03
79GO:0008171: O-methyltransferase activity6.85E-03
80GO:0016887: ATPase activity8.33E-03
81GO:0015114: phosphate ion transmembrane transporter activity9.11E-03
82GO:0005388: calcium-transporting ATPase activity9.11E-03
83GO:0004022: alcohol dehydrogenase (NAD) activity9.11E-03
84GO:0005262: calcium channel activity9.11E-03
85GO:0043531: ADP binding9.51E-03
86GO:0008083: growth factor activity9.92E-03
87GO:0050660: flavin adenine dinucleotide binding1.02E-02
88GO:0030553: cGMP binding1.07E-02
89GO:0008061: chitin binding1.07E-02
90GO:0005217: intracellular ligand-gated ion channel activity1.07E-02
91GO:0004970: ionotropic glutamate receptor activity1.07E-02
92GO:0030552: cAMP binding1.07E-02
93GO:0004867: serine-type endopeptidase inhibitor activity1.07E-02
94GO:0005216: ion channel activity1.34E-02
95GO:0004871: signal transducer activity1.48E-02
96GO:0016779: nucleotidyltransferase activity1.53E-02
97GO:0022891: substrate-specific transmembrane transporter activity1.62E-02
98GO:0019825: oxygen binding1.74E-02
99GO:0004672: protein kinase activity1.76E-02
100GO:0030551: cyclic nucleotide binding1.93E-02
101GO:0005249: voltage-gated potassium channel activity1.93E-02
102GO:0020037: heme binding1.99E-02
103GO:0005355: glucose transmembrane transporter activity2.14E-02
104GO:0010181: FMN binding2.14E-02
105GO:0004872: receptor activity2.25E-02
106GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.39E-02
107GO:0015297: antiporter activity2.45E-02
108GO:0005506: iron ion binding2.87E-02
109GO:0016597: amino acid binding2.95E-02
110GO:0051213: dioxygenase activity3.07E-02
111GO:0005515: protein binding3.10E-02
112GO:0042802: identical protein binding3.26E-02
113GO:0004806: triglyceride lipase activity3.45E-02
114GO:0004683: calmodulin-dependent protein kinase activity3.45E-02
115GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.58E-02
116GO:0005096: GTPase activator activity3.84E-02
117GO:0004222: metalloendopeptidase activity3.97E-02
118GO:0030145: manganese ion binding4.11E-02
119GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.39E-02
120GO:0000987: core promoter proximal region sequence-specific DNA binding4.53E-02
121GO:0004712: protein serine/threonine/tyrosine kinase activity4.67E-02
122GO:0004497: monooxygenase activity4.89E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane8.47E-10
2GO:0005783: endoplasmic reticulum6.23E-07
3GO:0005788: endoplasmic reticulum lumen3.40E-05
4GO:0031012: extracellular matrix6.71E-04
5GO:0005795: Golgi stack8.45E-04
6GO:0010168: ER body2.57E-03
7GO:0005801: cis-Golgi network3.09E-03
8GO:0016020: membrane3.09E-03
9GO:0048046: apoplast4.69E-03
10GO:0005618: cell wall5.74E-03
11GO:0016021: integral component of membrane6.04E-03
12GO:0005740: mitochondrial envelope6.85E-03
13GO:0005829: cytosol8.71E-03
14GO:0005750: mitochondrial respiratory chain complex III9.92E-03
15GO:0005576: extracellular region1.21E-02
16GO:0005834: heterotrimeric G-protein complex1.31E-02
17GO:0005741: mitochondrial outer membrane1.43E-02
18GO:0031225: anchored component of membrane2.00E-02
19GO:0071944: cell periphery2.59E-02
20GO:0005887: integral component of plasma membrane2.68E-02
21GO:0005774: vacuolar membrane2.95E-02
22GO:0019005: SCF ubiquitin ligase complex3.71E-02
23GO:0009505: plant-type cell wall4.07E-02
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Gene type



Gene DE type