co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G29170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006858: extracellular transport	0.00E+00
2	GO:0039694: viral RNA genome replication	0.00E+00
3	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
4	GO:0007141: male meiosis I	0.00E+00
5	GO:0002376: immune system process	0.00E+00
6	GO:0010360: negative regulation of anion channel activity	0.00E+00
7	GO:0030149: sphingolipid catabolic process	0.00E+00
8	GO:0009819: drought recovery	6.75E-05
9	GO:1990022: RNA polymerase III complex localization to nucleus	1.12E-04
10	GO:1902361: mitochondrial pyruvate transmembrane transport	1.12E-04
11	GO:0044376: RNA polymerase II complex import to nucleus	1.12E-04
12	GO:0010265: SCF complex assembly	1.12E-04
13	GO:0071806: protein transmembrane transport	1.12E-04
14	GO:0080120: CAAX-box protein maturation	1.12E-04
15	GO:0071586: CAAX-box protein processing	1.12E-04
16	GO:0006805: xenobiotic metabolic process	1.12E-04
17	GO:0060919: auxin influx	2.61E-04
18	GO:0006850: mitochondrial pyruvate transport	2.61E-04
19	GO:0019752: carboxylic acid metabolic process	2.61E-04
20	GO:0019441: tryptophan catabolic process to kynurenine	2.61E-04
21	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.61E-04
22	GO:0031648: protein destabilization	2.61E-04
23	GO:0015914: phospholipid transport	2.61E-04
24	GO:0010498: proteasomal protein catabolic process	4.32E-04
25	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	4.32E-04
26	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	4.32E-04
27	GO:0010359: regulation of anion channel activity	4.32E-04
28	GO:0061158: 3'-UTR-mediated mRNA destabilization	4.32E-04
29	GO:0051176: positive regulation of sulfur metabolic process	4.32E-04
30	GO:0009410: response to xenobiotic stimulus	4.32E-04
31	GO:0015031: protein transport	5.13E-04
32	GO:0046777: protein autophosphorylation	5.24E-04
33	GO:0010255: glucose mediated signaling pathway	6.19E-04
34	GO:0001676: long-chain fatty acid metabolic process	6.19E-04
35	GO:0034613: cellular protein localization	8.23E-04
36	GO:0009165: nucleotide biosynthetic process	8.23E-04
37	GO:0006564: L-serine biosynthetic process	1.04E-03
38	GO:0016094: polyprenol biosynthetic process	1.04E-03
39	GO:0010315: auxin efflux	1.27E-03
40	GO:0035435: phosphate ion transmembrane transport	1.27E-03
41	GO:1902456: regulation of stomatal opening	1.27E-03
42	GO:1900425: negative regulation of defense response to bacterium	1.27E-03
43	GO:0010150: leaf senescence	1.27E-03
44	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.27E-03
45	GO:0006751: glutathione catabolic process	1.27E-03
46	GO:0048232: male gamete generation	1.27E-03
47	GO:0070814: hydrogen sulfide biosynthetic process	1.27E-03
48	GO:0050790: regulation of catalytic activity	1.78E-03
49	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.06E-03
50	GO:0006605: protein targeting	2.06E-03
51	GO:2000070: regulation of response to water deprivation	2.06E-03
52	GO:0016559: peroxisome fission	2.06E-03
53	GO:0030968: endoplasmic reticulum unfolded protein response	2.35E-03
54	GO:0009051: pentose-phosphate shunt, oxidative branch	2.66E-03
55	GO:0009821: alkaloid biosynthetic process	2.66E-03
56	GO:0090333: regulation of stomatal closure	2.66E-03
57	GO:0051026: chiasma assembly	3.30E-03
58	GO:0000103: sulfate assimilation	3.30E-03
59	GO:0043069: negative regulation of programmed cell death	3.30E-03
60	GO:0009651: response to salt stress	3.49E-03
61	GO:0015706: nitrate transport	4.00E-03
62	GO:0000266: mitochondrial fission	4.00E-03
63	GO:0006626: protein targeting to mitochondrion	4.36E-03
64	GO:0006006: glucose metabolic process	4.36E-03
65	GO:0007034: vacuolar transport	4.74E-03
66	GO:0010540: basipetal auxin transport	4.74E-03
67	GO:0009553: embryo sac development	4.95E-03
68	GO:0010167: response to nitrate	5.13E-03
69	GO:0018105: peptidyl-serine phosphorylation	5.25E-03
70	GO:0000027: ribosomal large subunit assembly	5.93E-03
71	GO:0009863: salicylic acid mediated signaling pathway	5.93E-03
72	GO:0030150: protein import into mitochondrial matrix	5.93E-03
73	GO:2000377: regulation of reactive oxygen species metabolic process	5.93E-03
74	GO:0009116: nucleoside metabolic process	5.93E-03
75	GO:0016575: histone deacetylation	6.35E-03
76	GO:0009814: defense response, incompatible interaction	7.22E-03
77	GO:0016226: iron-sulfur cluster assembly	7.22E-03
78	GO:0007131: reciprocal meiotic recombination	7.22E-03
79	GO:0030433: ubiquitin-dependent ERAD pathway	7.22E-03
80	GO:0031348: negative regulation of defense response	7.22E-03
81	GO:0009790: embryo development	7.44E-03
82	GO:0009625: response to insect	7.67E-03
83	GO:0010091: trichome branching	8.13E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.60E-03
85	GO:0010501: RNA secondary structure unwinding	9.08E-03
86	GO:0010087: phloem or xylem histogenesis	9.08E-03
87	GO:0042631: cellular response to water deprivation	9.08E-03
88	GO:0009738: abscisic acid-activated signaling pathway	9.36E-03
89	GO:0006520: cellular amino acid metabolic process	9.57E-03
90	GO:0006470: protein dephosphorylation	1.01E-02
91	GO:0042752: regulation of circadian rhythm	1.01E-02
92	GO:0009646: response to absence of light	1.01E-02
93	GO:0035556: intracellular signal transduction	1.05E-02
94	GO:0006623: protein targeting to vacuole	1.06E-02
95	GO:0002229: defense response to oomycetes	1.11E-02
96	GO:0010193: response to ozone	1.11E-02
97	GO:0000302: response to reactive oxygen species	1.11E-02
98	GO:0046686: response to cadmium ion	1.15E-02
99	GO:0009630: gravitropism	1.16E-02
100	GO:0006310: DNA recombination	1.27E-02
101	GO:0051607: defense response to virus	1.38E-02
102	GO:0009615: response to virus	1.44E-02
103	GO:0009607: response to biotic stimulus	1.50E-02
104	GO:0007049: cell cycle	1.53E-02
105	GO:0042128: nitrate assimilation	1.56E-02
106	GO:0009723: response to ethylene	1.58E-02
107	GO:0008219: cell death	1.74E-02
108	GO:0048767: root hair elongation	1.80E-02
109	GO:0009407: toxin catabolic process	1.86E-02
110	GO:0010119: regulation of stomatal movement	1.93E-02
111	GO:0010043: response to zinc ion	1.93E-02
112	GO:0009867: jasmonic acid mediated signaling pathway	2.06E-02
113	GO:0006886: intracellular protein transport	2.10E-02
114	GO:0055114: oxidation-reduction process	2.29E-02
115	GO:0006631: fatty acid metabolic process	2.32E-02
116	GO:0006897: endocytosis	2.32E-02
117	GO:0042742: defense response to bacterium	2.38E-02
118	GO:0009926: auxin polar transport	2.46E-02
119	GO:0009636: response to toxic substance	2.67E-02
120	GO:0009753: response to jasmonic acid	2.69E-02
121	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.82E-02
122	GO:0006260: DNA replication	2.82E-02
123	GO:0009846: pollen germination	2.89E-02
124	GO:0006486: protein glycosylation	3.04E-02
125	GO:0051603: proteolysis involved in cellular protein catabolic process	3.12E-02
126	GO:0006417: regulation of translation	3.27E-02
127	GO:0009734: auxin-activated signaling pathway	3.52E-02
128	GO:0009620: response to fungus	3.67E-02
129	GO:0009555: pollen development	4.43E-02
130	GO:0006468: protein phosphorylation	4.68E-02
131	GO:0009058: biosynthetic process	4.76E-02
132	GO:0051301: cell division	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0004061: arylformamidase activity	2.61E-04
3	GO:0004617: phosphoglycerate dehydrogenase activity	2.61E-04
4	GO:0050833: pyruvate transmembrane transporter activity	4.32E-04
5	GO:0003840: gamma-glutamyltransferase activity	4.32E-04
6	GO:0036374: glutathione hydrolase activity	4.32E-04
7	GO:0032403: protein complex binding	4.32E-04
8	GO:0004781: sulfate adenylyltransferase (ATP) activity	4.32E-04
9	GO:0008430: selenium binding	4.32E-04
10	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	6.19E-04
11	GO:0031176: endo-1,4-beta-xylanase activity	6.19E-04
12	GO:0004749: ribose phosphate diphosphokinase activity	6.19E-04
13	GO:0010328: auxin influx transmembrane transporter activity	8.23E-04
14	GO:0004345: glucose-6-phosphate dehydrogenase activity	8.23E-04
15	GO:0004040: amidase activity	1.04E-03
16	GO:0002094: polyprenyltransferase activity	1.04E-03
17	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.04E-03
18	GO:0005509: calcium ion binding	1.21E-03
19	GO:0031593: polyubiquitin binding	1.27E-03
20	GO:0036402: proteasome-activating ATPase activity	1.27E-03
21	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.42E-03
22	GO:0004683: calmodulin-dependent protein kinase activity	1.49E-03
23	GO:0102391: decanoate--CoA ligase activity	1.52E-03
24	GO:0004602: glutathione peroxidase activity	1.52E-03
25	GO:0004656: procollagen-proline 4-dioxygenase activity	1.52E-03
26	GO:0008320: protein transmembrane transporter activity	1.78E-03
27	GO:0043295: glutathione binding	1.78E-03
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.78E-03
29	GO:0016831: carboxy-lyase activity	1.78E-03
30	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.08E-03
31	GO:0003746: translation elongation factor activity	2.08E-03
32	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.35E-03
33	GO:0008135: translation factor activity, RNA binding	2.35E-03
34	GO:0004364: glutathione transferase activity	2.57E-03
35	GO:0071949: FAD binding	2.66E-03
36	GO:0016844: strictosidine synthase activity	2.97E-03
37	GO:0015112: nitrate transmembrane transporter activity	2.97E-03
38	GO:0008047: enzyme activator activity	3.30E-03
39	GO:0008794: arsenate reductase (glutaredoxin) activity	3.65E-03
40	GO:0005543: phospholipid binding	3.65E-03
41	GO:0008559: xenobiotic-transporting ATPase activity	3.65E-03
42	GO:0005516: calmodulin binding	3.76E-03
43	GO:0005524: ATP binding	4.11E-03
44	GO:0000175: 3'-5'-exoribonuclease activity	4.36E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	4.36E-03
46	GO:0015266: protein channel activity	4.36E-03
47	GO:0005315: inorganic phosphate transmembrane transporter activity	4.36E-03
48	GO:0004175: endopeptidase activity	4.74E-03
49	GO:0004535: poly(A)-specific ribonuclease activity	4.74E-03
50	GO:0017025: TBP-class protein binding	5.13E-03
51	GO:0016787: hydrolase activity	5.29E-03
52	GO:0005515: protein binding	5.54E-03
53	GO:0031418: L-ascorbic acid binding	5.93E-03
54	GO:0004407: histone deacetylase activity	5.93E-03
55	GO:0004540: ribonuclease activity	6.78E-03
56	GO:0008408: 3'-5' exonuclease activity	6.78E-03
57	GO:0003727: single-stranded RNA binding	8.13E-03
58	GO:0016887: ATPase activity	8.21E-03
59	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.12E-02
60	GO:0042802: identical protein binding	1.12E-02
61	GO:0004197: cysteine-type endopeptidase activity	1.16E-02
62	GO:0016597: amino acid binding	1.38E-02
63	GO:0051213: dioxygenase activity	1.44E-02
64	GO:0004004: ATP-dependent RNA helicase activity	1.62E-02
65	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.74E-02
66	GO:0004222: metalloendopeptidase activity	1.86E-02
67	GO:0004674: protein serine/threonine kinase activity	2.22E-02
68	GO:0004722: protein serine/threonine phosphatase activity	2.23E-02
69	GO:0050661: NADP binding	2.25E-02
70	GO:0003924: GTPase activity	2.51E-02
71	GO:0005198: structural molecule activity	2.67E-02
72	GO:0005215: transporter activity	2.70E-02
73	GO:0051287: NAD binding	2.82E-02
74	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.04E-02
75	GO:0016298: lipase activity	3.12E-02
76	GO:0016301: kinase activity	3.18E-02
77	GO:0031625: ubiquitin protein ligase binding	3.27E-02
78	GO:0008234: cysteine-type peptidase activity	3.27E-02
79	GO:0022857: transmembrane transporter activity	3.75E-02
80	GO:0051082: unfolded protein binding	3.91E-02
81	GO:0016746: transferase activity, transferring acyl groups	3.99E-02
82	GO:0015035: protein disulfide oxidoreductase activity	3.99E-02
83	GO:0008026: ATP-dependent helicase activity	4.08E-02
84	GO:0004386: helicase activity	4.16E-02
85	GO:0030170: pyridoxal phosphate binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005789: endoplasmic reticulum membrane	3.36E-06
3	GO:0005783: endoplasmic reticulum	3.58E-05
4	GO:0031305: integral component of mitochondrial inner membrane	6.75E-05
5	GO:0032783: ELL-EAF complex	1.12E-04
6	GO:0030014: CCR4-NOT complex	1.12E-04
7	GO:0030134: ER to Golgi transport vesicle	2.61E-04
8	GO:0030139: endocytic vesicle	4.32E-04
9	GO:0030658: transport vesicle membrane	6.19E-04
10	GO:0031461: cullin-RING ubiquitin ligase complex	6.19E-04
11	GO:0016020: membrane	8.31E-04
12	GO:0000813: ESCRT I complex	1.04E-03
13	GO:0005778: peroxisomal membrane	1.14E-03
14	GO:0005829: cytosol	1.18E-03
15	GO:0005801: cis-Golgi network	1.52E-03
16	GO:0016272: prefoldin complex	1.52E-03
17	GO:0031597: cytosolic proteasome complex	1.52E-03
18	GO:0000794: condensed nuclear chromosome	1.78E-03
19	GO:0031595: nuclear proteasome complex	1.78E-03
20	GO:0005819: spindle	2.27E-03
21	GO:0005794: Golgi apparatus	2.37E-03
22	GO:0031902: late endosome membrane	2.47E-03
23	GO:0005773: vacuole	2.78E-03
24	GO:0008540: proteasome regulatory particle, base subcomplex	2.97E-03
25	GO:0017119: Golgi transport complex	3.30E-03
26	GO:0005764: lysosome	4.74E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	5.13E-03
28	GO:0043234: protein complex	5.52E-03
29	GO:0009524: phragmoplast	6.72E-03
30	GO:0005741: mitochondrial outer membrane	6.78E-03
31	GO:0005886: plasma membrane	7.52E-03
32	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.13E-03
33	GO:0000790: nuclear chromatin	8.60E-03
34	GO:0000151: ubiquitin ligase complex	1.74E-02
35	GO:0005802: trans-Golgi network	1.77E-02
36	GO:0005768: endosome	2.09E-02
37	GO:0016021: integral component of membrane	2.49E-02
38	GO:0000502: proteasome complex	3.04E-02
39	GO:0005635: nuclear envelope	3.20E-02
40	GO:0005737: cytoplasm	3.71E-02
41	GO:0005774: vacuolar membrane	3.77E-02
42	GO:0005623: cell	4.68E-02