co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900367: positive regulation of defense response to insect	0.00E+00
2	GO:0019428: allantoin biosynthetic process	0.00E+00
3	GO:0051553: flavone biosynthetic process	0.00E+00
4	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
5	GO:0071327: cellular response to trehalose stimulus	0.00E+00
6	GO:0015690: aluminum cation transport	0.00E+00
7	GO:0042742: defense response to bacterium	1.12E-16
8	GO:0009617: response to bacterium	8.87E-14
9	GO:0009627: systemic acquired resistance	1.56E-12
10	GO:0000162: tryptophan biosynthetic process	7.63E-10
11	GO:0080142: regulation of salicylic acid biosynthetic process	1.11E-09
12	GO:0009759: indole glucosinolate biosynthetic process	9.98E-09
13	GO:0006468: protein phosphorylation	4.36E-07
14	GO:0052544: defense response by callose deposition in cell wall	6.88E-07
15	GO:0009751: response to salicylic acid	8.72E-07
16	GO:0006952: defense response	1.10E-06
17	GO:0010942: positive regulation of cell death	1.78E-06
18	GO:0070588: calcium ion transmembrane transport	2.28E-06
19	GO:0009816: defense response to bacterium, incompatible interaction	3.10E-06
20	GO:0031349: positive regulation of defense response	3.96E-06
21	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.96E-06
22	GO:0010618: aerenchyma formation	3.96E-06
23	GO:0009626: plant-type hypersensitive response	4.94E-06
24	GO:0031348: negative regulation of defense response	7.07E-06
25	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	7.53E-06
26	GO:0010112: regulation of systemic acquired resistance	1.51E-05
27	GO:0050832: defense response to fungus	1.85E-05
28	GO:0051707: response to other organism	1.86E-05
29	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.03E-05
30	GO:0043069: negative regulation of programmed cell death	2.65E-05
31	GO:0002239: response to oomycetes	3.17E-05
32	GO:0009682: induced systemic resistance	3.39E-05
33	GO:0060548: negative regulation of cell death	5.68E-05
34	GO:0009697: salicylic acid biosynthetic process	8.98E-05
35	GO:0006979: response to oxidative stress	1.15E-04
36	GO:0071456: cellular response to hypoxia	1.60E-04
37	GO:0010310: regulation of hydrogen peroxide metabolic process	1.78E-04
38	GO:0009625: response to insect	1.82E-04
39	GO:0010150: leaf senescence	2.55E-04
40	GO:0009609: response to symbiotic bacterium	2.94E-04
41	GO:0009700: indole phytoalexin biosynthetic process	2.94E-04
42	GO:0055081: anion homeostasis	2.94E-04
43	GO:1901183: positive regulation of camalexin biosynthetic process	2.94E-04
44	GO:0010230: alternative respiration	2.94E-04
45	GO:0006643: membrane lipid metabolic process	2.94E-04
46	GO:0046244: salicylic acid catabolic process	2.94E-04
47	GO:0060862: negative regulation of floral organ abscission	2.94E-04
48	GO:0006144: purine nucleobase metabolic process	2.94E-04
49	GO:0010266: response to vitamin B1	2.94E-04
50	GO:0001560: regulation of cell growth by extracellular stimulus	2.94E-04
51	GO:0019628: urate catabolic process	2.94E-04
52	GO:0051245: negative regulation of cellular defense response	2.94E-04
53	GO:0010120: camalexin biosynthetic process	3.62E-04
54	GO:0043562: cellular response to nitrogen levels	3.62E-04
55	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.62E-04
56	GO:0002229: defense response to oomycetes	3.75E-04
57	GO:1900426: positive regulation of defense response to bacterium	5.16E-04
58	GO:0009620: response to fungus	5.32E-04
59	GO:0006212: uracil catabolic process	6.45E-04
60	GO:0019483: beta-alanine biosynthetic process	6.45E-04
61	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	6.45E-04
62	GO:0002221: pattern recognition receptor signaling pathway	6.45E-04
63	GO:0080185: effector dependent induction by symbiont of host immune response	6.45E-04
64	GO:0002213: defense response to insect	7.93E-04
65	GO:0010200: response to chitin	8.88E-04
66	GO:0009407: toxin catabolic process	9.53E-04
67	GO:0002237: response to molecule of bacterial origin	1.01E-03
68	GO:1900140: regulation of seedling development	1.04E-03
69	GO:0055074: calcium ion homeostasis	1.04E-03
70	GO:0072661: protein targeting to plasma membrane	1.04E-03
71	GO:0048281: inflorescence morphogenesis	1.04E-03
72	GO:0042343: indole glucosinolate metabolic process	1.13E-03
73	GO:0006886: intracellular protein transport	1.21E-03
74	GO:0009863: salicylic acid mediated signaling pathway	1.39E-03
75	GO:0080147: root hair cell development	1.39E-03
76	GO:0006612: protein targeting to membrane	1.50E-03
77	GO:0010148: transpiration	1.50E-03
78	GO:0048530: fruit morphogenesis	1.50E-03
79	GO:0051289: protein homotetramerization	1.50E-03
80	GO:0000187: activation of MAPK activity	1.50E-03
81	GO:0043207: response to external biotic stimulus	1.50E-03
82	GO:0009636: response to toxic substance	1.81E-03
83	GO:0009814: defense response, incompatible interaction	1.83E-03
84	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.83E-03
85	GO:0031347: regulation of defense response	1.98E-03
86	GO:0010600: regulation of auxin biosynthetic process	2.01E-03
87	GO:0071219: cellular response to molecule of bacterial origin	2.01E-03
88	GO:1901141: regulation of lignin biosynthetic process	2.01E-03
89	GO:0048830: adventitious root development	2.01E-03
90	GO:0045088: regulation of innate immune response	2.01E-03
91	GO:0010363: regulation of plant-type hypersensitive response	2.01E-03
92	GO:0006508: proteolysis	2.42E-03
93	GO:0000304: response to singlet oxygen	2.56E-03
94	GO:0046283: anthocyanin-containing compound metabolic process	2.56E-03
95	GO:0006564: L-serine biosynthetic process	2.56E-03
96	GO:0031365: N-terminal protein amino acid modification	2.56E-03
97	GO:0010225: response to UV-C	2.56E-03
98	GO:0007165: signal transduction	2.60E-03
99	GO:0061025: membrane fusion	2.94E-03
100	GO:0060918: auxin transport	3.16E-03
101	GO:0009117: nucleotide metabolic process	3.16E-03
102	GO:0009851: auxin biosynthetic process	3.16E-03
103	GO:0000302: response to reactive oxygen species	3.38E-03
104	GO:0006891: intra-Golgi vesicle-mediated transport	3.38E-03
105	GO:0009723: response to ethylene	3.39E-03
106	GO:0000911: cytokinesis by cell plate formation	3.81E-03
107	GO:0009612: response to mechanical stimulus	3.81E-03
108	GO:0006694: steroid biosynthetic process	3.81E-03
109	GO:0010199: organ boundary specification between lateral organs and the meristem	3.81E-03
110	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.81E-03
111	GO:0030163: protein catabolic process	3.85E-03
112	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.49E-03
113	GO:0010044: response to aluminum ion	4.49E-03
114	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.49E-03
115	GO:0009610: response to symbiotic fungus	4.49E-03
116	GO:0080027: response to herbivore	4.49E-03
117	GO:0046470: phosphatidylcholine metabolic process	4.49E-03
118	GO:0071446: cellular response to salicylic acid stimulus	4.49E-03
119	GO:1900056: negative regulation of leaf senescence	4.49E-03
120	GO:0055114: oxidation-reduction process	4.71E-03
121	GO:0001666: response to hypoxia	4.88E-03
122	GO:0009615: response to virus	4.88E-03
123	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.21E-03
124	GO:0030162: regulation of proteolysis	5.21E-03
125	GO:0006605: protein targeting	5.21E-03
126	GO:0031540: regulation of anthocyanin biosynthetic process	5.21E-03
127	GO:0006102: isocitrate metabolic process	5.21E-03
128	GO:0010204: defense response signaling pathway, resistance gene-independent	5.98E-03
129	GO:0009699: phenylpropanoid biosynthetic process	5.98E-03
130	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	5.98E-03
131	GO:0009817: defense response to fungus, incompatible interaction	6.37E-03
132	GO:0009813: flavonoid biosynthetic process	6.69E-03
133	GO:0010119: regulation of stomatal movement	7.37E-03
134	GO:0009753: response to jasmonic acid	7.58E-03
135	GO:0048268: clathrin coat assembly	7.60E-03
136	GO:0010205: photoinhibition	7.60E-03
137	GO:0009737: response to abscisic acid	7.78E-03
138	GO:0006099: tricarboxylic acid cycle	8.45E-03
139	GO:0006032: chitin catabolic process	8.48E-03
140	GO:0009641: shade avoidance	8.48E-03
141	GO:0010215: cellulose microfibril organization	8.48E-03
142	GO:0048229: gametophyte development	9.38E-03
143	GO:0009684: indoleacetic acid biosynthetic process	9.38E-03
144	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.03E-02
145	GO:0012501: programmed cell death	1.03E-02
146	GO:0006807: nitrogen compound metabolic process	1.13E-02
147	GO:0006541: glutamine metabolic process	1.23E-02
148	GO:0034976: response to endoplasmic reticulum stress	1.44E-02
149	GO:0010224: response to UV-B	1.46E-02
150	GO:0006487: protein N-linked glycosylation	1.55E-02
151	GO:0016192: vesicle-mediated transport	1.75E-02
152	GO:0048278: vesicle docking	1.78E-02
153	GO:0016998: cell wall macromolecule catabolic process	1.78E-02
154	GO:0098542: defense response to other organism	1.78E-02
155	GO:0019748: secondary metabolic process	1.90E-02
156	GO:0006012: galactose metabolic process	2.02E-02
157	GO:0009651: response to salt stress	2.03E-02
158	GO:0009742: brassinosteroid mediated signaling pathway	2.13E-02
159	GO:0009306: protein secretion	2.14E-02
160	GO:0070417: cellular response to cold	2.27E-02
161	GO:0015031: protein transport	2.32E-02
162	GO:0042391: regulation of membrane potential	2.40E-02
163	GO:0000413: protein peptidyl-prolyl isomerization	2.40E-02
164	GO:0010051: xylem and phloem pattern formation	2.40E-02
165	GO:0008360: regulation of cell shape	2.53E-02
166	GO:0010197: polar nucleus fusion	2.53E-02
167	GO:0009409: response to cold	2.58E-02
168	GO:0009646: response to absence of light	2.66E-02
169	GO:0006629: lipid metabolic process	2.68E-02
170	GO:0010183: pollen tube guidance	2.80E-02
171	GO:0006623: protein targeting to vacuole	2.80E-02
172	GO:0009630: gravitropism	3.08E-02
173	GO:0019760: glucosinolate metabolic process	3.37E-02
174	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.88E-02
175	GO:0007166: cell surface receptor signaling pathway	3.97E-02
176	GO:0006906: vesicle fusion	4.13E-02
177	GO:0009414: response to water deprivation	4.42E-02
178	GO:0016049: cell growth	4.44E-02
179	GO:0008219: cell death	4.61E-02
180	GO:0010311: lateral root formation	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
3	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
6	GO:0003837: beta-ureidopropionase activity	0.00E+00
7	GO:0016301: kinase activity	4.27E-07
8	GO:0005516: calmodulin binding	8.36E-07
9	GO:0005388: calcium-transporting ATPase activity	1.30E-06
10	GO:0004656: procollagen-proline 4-dioxygenase activity	3.09E-06
11	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.89E-06
12	GO:0004049: anthranilate synthase activity	1.41E-05
13	GO:0004674: protein serine/threonine kinase activity	4.87E-05
14	GO:0004190: aspartic-type endopeptidase activity	7.60E-05
15	GO:0005524: ATP binding	1.61E-04
16	GO:0008565: protein transporter activity	1.93E-04
17	GO:0004048: anthranilate phosphoribosyltransferase activity	2.94E-04
18	GO:2001147: camalexin binding	2.94E-04
19	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.94E-04
20	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.94E-04
21	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.94E-04
22	GO:2001227: quercitrin binding	2.94E-04
23	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.94E-04
24	GO:1901149: salicylic acid binding	2.94E-04
25	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.94E-04
26	GO:0015085: calcium ion transmembrane transporter activity	2.94E-04
27	GO:0004338: glucan exo-1,3-beta-glucosidase activity	6.45E-04
28	GO:0004385: guanylate kinase activity	6.45E-04
29	GO:0004566: beta-glucuronidase activity	6.45E-04
30	GO:0004806: triglyceride lipase activity	7.43E-04
31	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.04E-03
32	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
33	GO:0004672: protein kinase activity	1.13E-03
34	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.31E-03
35	GO:0031418: L-ascorbic acid binding	1.39E-03
36	GO:0005506: iron ion binding	1.45E-03
37	GO:0004364: glutathione transferase activity	1.48E-03
38	GO:0035529: NADH pyrophosphatase activity	1.50E-03
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.50E-03
40	GO:0033612: receptor serine/threonine kinase binding	1.68E-03
41	GO:0008810: cellulase activity	2.00E-03
42	GO:0043495: protein anchor	2.01E-03
43	GO:0004834: tryptophan synthase activity	2.01E-03
44	GO:0016298: lipase activity	2.38E-03
45	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.56E-03
46	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.56E-03
47	GO:0047631: ADP-ribose diphosphatase activity	2.56E-03
48	GO:0045431: flavonol synthase activity	2.56E-03
49	GO:0030276: clathrin binding	2.74E-03
50	GO:0000210: NAD+ diphosphatase activity	3.16E-03
51	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.16E-03
52	GO:0004012: phospholipid-translocating ATPase activity	3.81E-03
53	GO:0004602: glutathione peroxidase activity	3.81E-03
54	GO:0043295: glutathione binding	4.49E-03
55	GO:0008235: metalloexopeptidase activity	4.49E-03
56	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.49E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	5.21E-03
58	GO:0004708: MAP kinase kinase activity	5.21E-03
59	GO:0004034: aldose 1-epimerase activity	5.21E-03
60	GO:0030247: polysaccharide binding	5.75E-03
61	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	5.98E-03
62	GO:0003843: 1,3-beta-D-glucan synthase activity	5.98E-03
63	GO:0004630: phospholipase D activity	5.98E-03
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.54E-03
65	GO:0050897: cobalt ion binding	7.37E-03
66	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.60E-03
67	GO:0019825: oxygen binding	8.40E-03
68	GO:0004713: protein tyrosine kinase activity	8.48E-03
69	GO:0004568: chitinase activity	8.48E-03
70	GO:0005545: 1-phosphatidylinositol binding	8.48E-03
71	GO:0004177: aminopeptidase activity	9.38E-03
72	GO:0008559: xenobiotic-transporting ATPase activity	9.38E-03
73	GO:0005484: SNAP receptor activity	1.04E-02
74	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.13E-02
75	GO:0015095: magnesium ion transmembrane transporter activity	1.13E-02
76	GO:0005262: calcium channel activity	1.13E-02
77	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.23E-02
78	GO:0051287: NAD binding	1.27E-02
79	GO:0008061: chitin binding	1.33E-02
80	GO:0003712: transcription cofactor activity	1.33E-02
81	GO:0030552: cAMP binding	1.33E-02
82	GO:0030553: cGMP binding	1.33E-02
83	GO:0031625: ubiquitin protein ligase binding	1.56E-02
84	GO:0005216: ion channel activity	1.66E-02
85	GO:0004540: ribonuclease activity	1.78E-02
86	GO:0004707: MAP kinase activity	1.78E-02
87	GO:0003756: protein disulfide isomerase activity	2.14E-02
88	GO:0030551: cyclic nucleotide binding	2.40E-02
89	GO:0005249: voltage-gated potassium channel activity	2.40E-02
90	GO:0016853: isomerase activity	2.66E-02
91	GO:0005507: copper ion binding	2.74E-02
92	GO:0020037: heme binding	3.33E-02
93	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.51E-02
94	GO:0051213: dioxygenase activity	3.82E-02
95	GO:0005509: calcium ion binding	4.07E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	4.29E-02
97	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.61E-02
98	GO:0043565: sequence-specific DNA binding	4.73E-02
99	GO:0015238: drug transmembrane transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.47E-09
2	GO:0016021: integral component of membrane	8.03E-07
3	GO:0005783: endoplasmic reticulum	4.83E-06
4	GO:0045252: oxoglutarate dehydrogenase complex	2.94E-04
5	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.94E-04
6	GO:0009504: cell plate	3.43E-04
7	GO:0030665: clathrin-coated vesicle membrane	5.16E-04
8	GO:0005901: caveola	6.45E-04
9	GO:0005950: anthranilate synthase complex	6.45E-04
10	GO:0005765: lysosomal membrane	6.94E-04
11	GO:0005887: integral component of plasma membrane	7.18E-04
12	GO:0005750: mitochondrial respiratory chain complex III	1.01E-03
13	GO:0005795: Golgi stack	1.13E-03
14	GO:0005774: vacuolar membrane	1.22E-03
15	GO:0030660: Golgi-associated vesicle membrane	2.01E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.01E-03
17	GO:0000164: protein phosphatase type 1 complex	2.56E-03
18	GO:0008250: oligosaccharyltransferase complex	2.56E-03
19	GO:0005789: endoplasmic reticulum membrane	3.79E-03
20	GO:0005788: endoplasmic reticulum lumen	5.16E-03
21	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.21E-03
22	GO:0030131: clathrin adaptor complex	5.21E-03
23	GO:0000148: 1,3-beta-D-glucan synthase complex	5.98E-03
24	GO:0017119: Golgi transport complex	8.48E-03
25	GO:0031225: anchored component of membrane	9.84E-03
26	GO:0009506: plasmodesma	1.01E-02
27	GO:0046658: anchored component of plasma membrane	1.02E-02
28	GO:0016020: membrane	1.10E-02
29	GO:0005618: cell wall	1.18E-02
30	GO:0005769: early endosome	1.44E-02
31	GO:0005905: clathrin-coated pit	1.78E-02
32	GO:0030136: clathrin-coated vesicle	2.27E-02
33	GO:0048046: apoplast	2.39E-02
34	GO:0005829: cytosol	2.79E-02
35	GO:0000151: ubiquitin ligase complex	4.61E-02
36	GO:0005643: nuclear pore	4.61E-02
37	GO:0019005: SCF ubiquitin ligase complex	4.61E-02