co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
3	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
4	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
5	GO:0048227: plasma membrane to endosome transport	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
9	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
10	GO:0080056: petal vascular tissue pattern formation	0.00E+00
11	GO:0006014: D-ribose metabolic process	9.17E-05
12	GO:0010150: leaf senescence	1.35E-04
13	GO:0035344: hypoxanthine transport	2.36E-04
14	GO:0098721: uracil import across plasma membrane	2.36E-04
15	GO:0042759: long-chain fatty acid biosynthetic process	2.36E-04
16	GO:0098702: adenine import across plasma membrane	2.36E-04
17	GO:0034975: protein folding in endoplasmic reticulum	2.36E-04
18	GO:0098710: guanine import across plasma membrane	2.36E-04
19	GO:0006481: C-terminal protein methylation	2.36E-04
20	GO:0010941: regulation of cell death	2.36E-04
21	GO:0006468: protein phosphorylation	2.66E-04
22	GO:0009821: alkaloid biosynthetic process	3.18E-04
23	GO:0043069: negative regulation of programmed cell death	4.42E-04
24	GO:0019374: galactolipid metabolic process	5.24E-04
25	GO:0009727: detection of ethylene stimulus	5.24E-04
26	GO:0043066: negative regulation of apoptotic process	5.24E-04
27	GO:0019483: beta-alanine biosynthetic process	5.24E-04
28	GO:0015865: purine nucleotide transport	5.24E-04
29	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.24E-04
30	GO:0042325: regulation of phosphorylation	5.24E-04
31	GO:0019441: tryptophan catabolic process to kynurenine	5.24E-04
32	GO:0050684: regulation of mRNA processing	5.24E-04
33	GO:0006212: uracil catabolic process	5.24E-04
34	GO:0000266: mitochondrial fission	5.84E-04
35	GO:0010498: proteasomal protein catabolic process	8.52E-04
36	GO:1900055: regulation of leaf senescence	8.52E-04
37	GO:0032784: regulation of DNA-templated transcription, elongation	8.52E-04
38	GO:2000377: regulation of reactive oxygen species metabolic process	1.02E-03
39	GO:0009399: nitrogen fixation	1.21E-03
40	GO:0046513: ceramide biosynthetic process	1.21E-03
41	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.21E-03
42	GO:2001289: lipid X metabolic process	1.21E-03
43	GO:0070301: cellular response to hydrogen peroxide	1.21E-03
44	GO:0046902: regulation of mitochondrial membrane permeability	1.21E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.21E-03
46	GO:0030433: ubiquitin-dependent ERAD pathway	1.35E-03
47	GO:0006542: glutamine biosynthetic process	1.62E-03
48	GO:0033320: UDP-D-xylose biosynthetic process	1.62E-03
49	GO:0046686: response to cadmium ion	1.96E-03
50	GO:0006090: pyruvate metabolic process	2.07E-03
51	GO:0005513: detection of calcium ion	2.07E-03
52	GO:0006461: protein complex assembly	2.07E-03
53	GO:0007029: endoplasmic reticulum organization	2.07E-03
54	GO:0009620: response to fungus	2.12E-03
55	GO:0019252: starch biosynthetic process	2.31E-03
56	GO:1900425: negative regulation of defense response to bacterium	2.55E-03
57	GO:0002238: response to molecule of fungal origin	2.55E-03
58	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.55E-03
59	GO:0042732: D-xylose metabolic process	2.55E-03
60	GO:0007264: small GTPase mediated signal transduction	2.63E-03
61	GO:0009612: response to mechanical stimulus	3.06E-03
62	GO:0048280: vesicle fusion with Golgi apparatus	3.06E-03
63	GO:0009615: response to virus	3.56E-03
64	GO:0000338: protein deneddylation	3.61E-03
65	GO:0006400: tRNA modification	3.61E-03
66	GO:1902074: response to salt	3.61E-03
67	GO:0006744: ubiquinone biosynthetic process	3.61E-03
68	GO:0009819: drought recovery	4.19E-03
69	GO:1900150: regulation of defense response to fungus	4.19E-03
70	GO:0016559: peroxisome fission	4.19E-03
71	GO:0006644: phospholipid metabolic process	4.19E-03
72	GO:0008219: cell death	4.64E-03
73	GO:0043562: cellular response to nitrogen levels	4.79E-03
74	GO:0017004: cytochrome complex assembly	4.79E-03
75	GO:0006972: hyperosmotic response	4.79E-03
76	GO:0015996: chlorophyll catabolic process	4.79E-03
77	GO:0016310: phosphorylation	5.26E-03
78	GO:0009051: pentose-phosphate shunt, oxidative branch	5.43E-03
79	GO:0007166: cell surface receptor signaling pathway	5.65E-03
80	GO:0006896: Golgi to vacuole transport	6.78E-03
81	GO:0010629: negative regulation of gene expression	6.78E-03
82	GO:0030148: sphingolipid biosynthetic process	7.50E-03
83	GO:0000038: very long-chain fatty acid metabolic process	7.50E-03
84	GO:0051707: response to other organism	7.57E-03
85	GO:0071365: cellular response to auxin stimulus	8.25E-03
86	GO:0006807: nitrogen compound metabolic process	9.02E-03
87	GO:0006626: protein targeting to mitochondrion	9.02E-03
88	GO:0006108: malate metabolic process	9.02E-03
89	GO:0055046: microgametogenesis	9.02E-03
90	GO:0010588: cotyledon vascular tissue pattern formation	9.02E-03
91	GO:0009809: lignin biosynthetic process	1.02E-02
92	GO:0009225: nucleotide-sugar metabolic process	1.06E-02
93	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-02
94	GO:0006096: glycolytic process	1.21E-02
95	GO:0080147: root hair cell development	1.24E-02
96	GO:0048367: shoot system development	1.25E-02
97	GO:0006874: cellular calcium ion homeostasis	1.32E-02
98	GO:0016998: cell wall macromolecule catabolic process	1.42E-02
99	GO:0051260: protein homooligomerization	1.42E-02
100	GO:0009742: brassinosteroid mediated signaling pathway	1.55E-02
101	GO:0071369: cellular response to ethylene stimulus	1.61E-02
102	GO:0006012: galactose metabolic process	1.61E-02
103	GO:0009561: megagametogenesis	1.70E-02
104	GO:0045492: xylan biosynthetic process	1.70E-02
105	GO:0042147: retrograde transport, endosome to Golgi	1.80E-02
106	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.80E-02
107	GO:0009058: biosynthetic process	1.93E-02
108	GO:0006885: regulation of pH	2.01E-02
109	GO:0010305: leaf vascular tissue pattern formation	2.01E-02
110	GO:0009646: response to absence of light	2.12E-02
111	GO:0006623: protein targeting to vacuole	2.23E-02
112	GO:0006633: fatty acid biosynthetic process	2.30E-02
113	GO:0071554: cell wall organization or biogenesis	2.34E-02
114	GO:0002229: defense response to oomycetes	2.34E-02
115	GO:0000302: response to reactive oxygen species	2.34E-02
116	GO:0006891: intra-Golgi vesicle-mediated transport	2.34E-02
117	GO:0010583: response to cyclopentenone	2.45E-02
118	GO:0016032: viral process	2.45E-02
119	GO:0009630: gravitropism	2.45E-02
120	GO:0006464: cellular protein modification process	2.68E-02
121	GO:0006904: vesicle docking involved in exocytosis	2.80E-02
122	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.83E-02
123	GO:0042742: defense response to bacterium	2.87E-02
124	GO:0006470: protein dephosphorylation	2.89E-02
125	GO:0009607: response to biotic stimulus	3.16E-02
126	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.16E-02
127	GO:0042128: nitrate assimilation	3.29E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	3.41E-02
129	GO:0006950: response to stress	3.41E-02
130	GO:0016049: cell growth	3.54E-02
131	GO:0006499: N-terminal protein myristoylation	3.93E-02
132	GO:0009407: toxin catabolic process	3.93E-02
133	GO:0045087: innate immune response	4.34E-02
134	GO:0016051: carbohydrate biosynthetic process	4.34E-02
135	GO:0006099: tricarboxylic acid cycle	4.48E-02
136	GO:0009723: response to ethylene	4.51E-02
137	GO:0048366: leaf development	4.58E-02
138	GO:0006839: mitochondrial transport	4.76E-02
139	GO:0006887: exocytosis	4.90E-02
140	GO:0006897: endocytosis	4.90E-02
141	GO:0006631: fatty acid metabolic process	4.90E-02
142	GO:0055085: transmembrane transport	4.91E-02
143	GO:0010200: response to chitin	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
3	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0070577: lysine-acetylated histone binding	0.00E+00
6	GO:0016301: kinase activity	9.34E-06
7	GO:0004674: protein serine/threonine kinase activity	9.56E-06
8	GO:0004747: ribokinase activity	1.27E-04
9	GO:0005524: ATP binding	1.86E-04
10	GO:0008865: fructokinase activity	2.12E-04
11	GO:0015294: solute:cation symporter activity	2.36E-04
12	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.36E-04
13	GO:0015207: adenine transmembrane transporter activity	2.36E-04
14	GO:0019707: protein-cysteine S-acyltransferase activity	2.36E-04
15	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.36E-04
16	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.36E-04
17	GO:0015208: guanine transmembrane transporter activity	2.36E-04
18	GO:0030955: potassium ion binding	3.78E-04
19	GO:0016844: strictosidine synthase activity	3.78E-04
20	GO:0004743: pyruvate kinase activity	3.78E-04
21	GO:0045140: inositol phosphoceramide synthase activity	5.24E-04
22	GO:0004061: arylformamidase activity	5.24E-04
23	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	5.24E-04
24	GO:0015036: disulfide oxidoreductase activity	5.24E-04
25	GO:0050291: sphingosine N-acyltransferase activity	5.24E-04
26	GO:0004557: alpha-galactosidase activity	8.52E-04
27	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.52E-04
28	GO:0004383: guanylate cyclase activity	8.52E-04
29	GO:0016805: dipeptidase activity	8.52E-04
30	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	8.52E-04
31	GO:0052692: raffinose alpha-galactosidase activity	8.52E-04
32	GO:0005093: Rab GDP-dissociation inhibitor activity	8.52E-04
33	GO:0008430: selenium binding	8.52E-04
34	GO:0001653: peptide receptor activity	1.21E-03
35	GO:0070628: proteasome binding	1.62E-03
36	GO:0004470: malic enzyme activity	1.62E-03
37	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.62E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.62E-03
39	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.62E-03
40	GO:0015210: uracil transmembrane transporter activity	1.62E-03
41	GO:0008948: oxaloacetate decarboxylase activity	2.07E-03
42	GO:0004040: amidase activity	2.07E-03
43	GO:0005496: steroid binding	2.07E-03
44	GO:0005471: ATP:ADP antiporter activity	2.07E-03
45	GO:0004356: glutamate-ammonia ligase activity	2.07E-03
46	GO:0005459: UDP-galactose transmembrane transporter activity	2.07E-03
47	GO:0036402: proteasome-activating ATPase activity	2.55E-03
48	GO:0048040: UDP-glucuronate decarboxylase activity	2.55E-03
49	GO:0102391: decanoate--CoA ligase activity	3.06E-03
50	GO:0070403: NAD+ binding	3.06E-03
51	GO:0004620: phospholipase activity	3.61E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	3.61E-03
53	GO:0008235: metalloexopeptidase activity	3.61E-03
54	GO:0052747: sinapyl alcohol dehydrogenase activity	4.19E-03
55	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.19E-03
56	GO:0004034: aldose 1-epimerase activity	4.19E-03
57	GO:0030145: manganese ion binding	5.36E-03
58	GO:0071949: FAD binding	5.43E-03
59	GO:0003678: DNA helicase activity	5.43E-03
60	GO:0047617: acyl-CoA hydrolase activity	6.09E-03
61	GO:0004713: protein tyrosine kinase activity	6.78E-03
62	GO:0008171: O-methyltransferase activity	6.78E-03
63	GO:0004364: glutathione transferase activity	7.27E-03
64	GO:0005543: phospholipid binding	7.50E-03
65	GO:0004177: aminopeptidase activity	7.50E-03
66	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.25E-03
67	GO:0019888: protein phosphatase regulator activity	9.02E-03
68	GO:0017025: TBP-class protein binding	1.06E-02
69	GO:0005217: intracellular ligand-gated ion channel activity	1.06E-02
70	GO:0004970: ionotropic glutamate receptor activity	1.06E-02
71	GO:0003954: NADH dehydrogenase activity	1.24E-02
72	GO:0043424: protein histidine kinase binding	1.32E-02
73	GO:0033612: receptor serine/threonine kinase binding	1.42E-02
74	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.42E-02
75	GO:0004722: protein serine/threonine phosphatase activity	1.54E-02
76	GO:0003756: protein disulfide isomerase activity	1.70E-02
77	GO:0005451: monovalent cation:proton antiporter activity	1.91E-02
78	GO:0015299: solute:proton antiporter activity	2.12E-02
79	GO:0010181: FMN binding	2.12E-02
80	GO:0016853: isomerase activity	2.12E-02
81	GO:0004872: receptor activity	2.23E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-02
83	GO:0015385: sodium:proton antiporter activity	2.56E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.56E-02
85	GO:0016791: phosphatase activity	2.68E-02
86	GO:0008483: transaminase activity	2.80E-02
87	GO:0016413: O-acetyltransferase activity	2.92E-02
88	GO:0051213: dioxygenase activity	3.04E-02
89	GO:0016887: ATPase activity	3.10E-02
90	GO:0008375: acetylglucosaminyltransferase activity	3.29E-02
91	GO:0004721: phosphoprotein phosphatase activity	3.41E-02
92	GO:0005096: GTPase activator activity	3.80E-02
93	GO:0046982: protein heterodimerization activity	3.83E-02
94	GO:0000287: magnesium ion binding	3.83E-02
95	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.34E-02
96	GO:0003746: translation elongation factor activity	4.34E-02
97	GO:0000149: SNARE binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.54E-08
2	GO:0005886: plasma membrane	7.39E-08
3	GO:0005783: endoplasmic reticulum	2.92E-06
4	GO:0005789: endoplasmic reticulum membrane	3.24E-05
5	GO:0005829: cytosol	1.17E-04
6	GO:0005794: Golgi apparatus	1.41E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	2.36E-04
8	GO:0000138: Golgi trans cisterna	2.36E-04
9	GO:0031314: extrinsic component of mitochondrial inner membrane	5.24E-04
10	GO:0031304: intrinsic component of mitochondrial inner membrane	5.24E-04
11	GO:0005773: vacuole	6.04E-04
12	GO:0070062: extracellular exosome	1.21E-03
13	GO:0016020: membrane	1.47E-03
14	GO:0005746: mitochondrial respiratory chain	2.07E-03
15	GO:0030140: trans-Golgi network transport vesicle	2.55E-03
16	GO:0031597: cytosolic proteasome complex	3.06E-03
17	GO:0030173: integral component of Golgi membrane	3.06E-03
18	GO:0031595: nuclear proteasome complex	3.61E-03
19	GO:0005774: vacuolar membrane	4.04E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	4.19E-03
21	GO:0030131: clathrin adaptor complex	4.19E-03
22	GO:0008180: COP9 signalosome	5.43E-03
23	GO:0005802: trans-Golgi network	5.90E-03
24	GO:0008540: proteasome regulatory particle, base subcomplex	6.09E-03
25	GO:0030125: clathrin vesicle coat	6.78E-03
26	GO:0031902: late endosome membrane	6.98E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	1.06E-02
28	GO:0005795: Golgi stack	1.06E-02
29	GO:0005769: early endosome	1.15E-02
30	GO:0043234: protein complex	1.15E-02
31	GO:0005741: mitochondrial outer membrane	1.42E-02
32	GO:0005905: clathrin-coated pit	1.42E-02
33	GO:0005839: proteasome core complex	1.42E-02
34	GO:0005743: mitochondrial inner membrane	1.63E-02
35	GO:0005770: late endosome	2.01E-02
36	GO:0019898: extrinsic component of membrane	2.23E-02
37	GO:0000145: exocyst	2.45E-02
38	GO:0005778: peroxisomal membrane	2.80E-02
39	GO:0009506: plasmodesma	3.96E-02
40	GO:0000325: plant-type vacuole	4.07E-02
41	GO:0000786: nucleosome	4.20E-02
42	GO:0005777: peroxisome	4.34E-02
43	GO:0031201: SNARE complex	4.90E-02