co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
3	GO:0080052: response to histidine	0.00E+00
4	GO:0046865: terpenoid transport	0.00E+00
5	GO:0080053: response to phenylalanine	0.00E+00
6	GO:0006182: cGMP biosynthetic process	0.00E+00
7	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
8	GO:0010055: atrichoblast differentiation	0.00E+00
9	GO:0009751: response to salicylic acid	1.98E-05
10	GO:0009617: response to bacterium	2.81E-05
11	GO:0009620: response to fungus	6.91E-05
12	GO:0010120: camalexin biosynthetic process	1.02E-04
13	GO:0006952: defense response	1.24E-04
14	GO:0051938: L-glutamate import	1.25E-04
15	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.25E-04
16	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.25E-04
17	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.25E-04
18	GO:0032107: regulation of response to nutrient levels	1.25E-04
19	GO:0009817: defense response to fungus, incompatible interaction	1.76E-04
20	GO:0009407: toxin catabolic process	2.02E-04
21	GO:0009682: induced systemic resistance	2.10E-04
22	GO:0009805: coumarin biosynthetic process	2.90E-04
23	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	2.90E-04
24	GO:0042939: tripeptide transport	2.90E-04
25	GO:0043091: L-arginine import	2.90E-04
26	GO:0080183: response to photooxidative stress	2.90E-04
27	GO:0015802: basic amino acid transport	2.90E-04
28	GO:0009636: response to toxic substance	3.99E-04
29	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.78E-04
30	GO:0015692: lead ion transport	4.78E-04
31	GO:0080168: abscisic acid transport	4.78E-04
32	GO:0055114: oxidation-reduction process	4.99E-04
33	GO:0003333: amino acid transmembrane transport	5.28E-04
34	GO:0071456: cellular response to hypoxia	5.76E-04
35	GO:0010200: response to chitin	6.33E-04
36	GO:0033169: histone H3-K9 demethylation	6.85E-04
37	GO:0033358: UDP-L-arabinose biosynthetic process	9.08E-04
38	GO:0010600: regulation of auxin biosynthetic process	9.08E-04
39	GO:0042938: dipeptide transport	9.08E-04
40	GO:0045227: capsule polysaccharide biosynthetic process	9.08E-04
41	GO:0009851: auxin biosynthetic process	9.76E-04
42	GO:0002229: defense response to oomycetes	1.04E-03
43	GO:0010193: response to ozone	1.04E-03
44	GO:0000304: response to singlet oxygen	1.15E-03
45	GO:0010256: endomembrane system organization	1.41E-03
46	GO:0006561: proline biosynthetic process	1.41E-03
47	GO:0010942: positive regulation of cell death	1.41E-03
48	GO:0010150: leaf senescence	1.54E-03
49	GO:0009627: systemic acquired resistance	1.65E-03
50	GO:0045926: negative regulation of growth	1.68E-03
51	GO:0042742: defense response to bacterium	1.84E-03
52	GO:1900056: negative regulation of leaf senescence	1.98E-03
53	GO:0050829: defense response to Gram-negative bacterium	1.98E-03
54	GO:1900057: positive regulation of leaf senescence	1.98E-03
55	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.98E-03
56	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.29E-03
57	GO:0030091: protein repair	2.29E-03
58	GO:0009699: phenylpropanoid biosynthetic process	2.61E-03
59	GO:0010204: defense response signaling pathway, resistance gene-independent	2.61E-03
60	GO:0009821: alkaloid biosynthetic process	2.95E-03
61	GO:0051707: response to other organism	3.12E-03
62	GO:0009723: response to ethylene	3.21E-03
63	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.31E-03
64	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.68E-03
65	GO:0009688: abscisic acid biosynthetic process	3.68E-03
66	GO:0042538: hyperosmotic salinity response	3.91E-03
67	GO:0009089: lysine biosynthetic process via diaminopimelate	4.06E-03
68	GO:0009809: lignin biosynthetic process	4.20E-03
69	GO:0006790: sulfur compound metabolic process	4.45E-03
70	GO:0002213: defense response to insect	4.45E-03
71	GO:0055046: microgametogenesis	4.86E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	4.86E-03
73	GO:0032259: methylation	5.45E-03
74	GO:0009969: xyloglucan biosynthetic process	5.71E-03
75	GO:0009225: nucleotide-sugar metabolic process	5.71E-03
76	GO:0070588: calcium ion transmembrane transport	5.71E-03
77	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
78	GO:0000162: tryptophan biosynthetic process	6.15E-03
79	GO:0009753: response to jasmonic acid	6.29E-03
80	GO:0080147: root hair cell development	6.61E-03
81	GO:0005992: trehalose biosynthetic process	6.61E-03
82	GO:0006874: cellular calcium ion homeostasis	7.08E-03
83	GO:0016998: cell wall macromolecule catabolic process	7.56E-03
84	GO:0019748: secondary metabolic process	8.05E-03
85	GO:0006012: galactose metabolic process	8.56E-03
86	GO:0009561: megagametogenesis	9.07E-03
87	GO:0006885: regulation of pH	1.07E-02
88	GO:0042752: regulation of circadian rhythm	1.12E-02
89	GO:0006623: protein targeting to vacuole	1.18E-02
90	GO:0009611: response to wounding	1.23E-02
91	GO:0050832: defense response to fungus	1.23E-02
92	GO:0010252: auxin homeostasis	1.42E-02
93	GO:0051607: defense response to virus	1.54E-02
94	GO:0009615: response to virus	1.61E-02
95	GO:0009607: response to biotic stimulus	1.67E-02
96	GO:0008219: cell death	1.94E-02
97	GO:0010311: lateral root formation	2.01E-02
98	GO:0009832: plant-type cell wall biogenesis	2.01E-02
99	GO:0006499: N-terminal protein myristoylation	2.08E-02
100	GO:0048527: lateral root development	2.15E-02
101	GO:0007568: aging	2.15E-02
102	GO:0006865: amino acid transport	2.23E-02
103	GO:0007165: signal transduction	2.26E-02
104	GO:0042542: response to hydrogen peroxide	2.68E-02
105	GO:0006979: response to oxidative stress	2.93E-02
106	GO:0006855: drug transmembrane transport	3.07E-02
107	GO:0006812: cation transport	3.24E-02
108	GO:0006486: protein glycosylation	3.40E-02
109	GO:0006813: potassium ion transport	3.40E-02
110	GO:0006857: oligopeptide transport	3.57E-02
111	GO:0009626: plant-type hypersensitive response	4.01E-02
112	GO:0042545: cell wall modification	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.14E-05
3	GO:0050660: flavin adenine dinucleotide binding	7.02E-05
4	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.25E-04
5	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.25E-04
6	GO:0008171: O-methyltransferase activity	1.79E-04
7	GO:0009055: electron carrier activity	2.10E-04
8	GO:0042937: tripeptide transporter activity	2.90E-04
9	GO:0032454: histone demethylase activity (H3-K9 specific)	2.90E-04
10	GO:0004566: beta-glucuronidase activity	2.90E-04
11	GO:0004364: glutathione transferase activity	3.25E-04
12	GO:0042409: caffeoyl-CoA O-methyltransferase activity	4.78E-04
13	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.78E-04
14	GO:0004383: guanylate cyclase activity	4.78E-04
15	GO:0004049: anthranilate synthase activity	4.78E-04
16	GO:0015189: L-lysine transmembrane transporter activity	6.85E-04
17	GO:0015181: arginine transmembrane transporter activity	6.85E-04
18	GO:0005313: L-glutamate transmembrane transporter activity	9.08E-04
19	GO:0004031: aldehyde oxidase activity	9.08E-04
20	GO:0050302: indole-3-acetaldehyde oxidase activity	9.08E-04
21	GO:0010279: indole-3-acetic acid amido synthetase activity	9.08E-04
22	GO:0050373: UDP-arabinose 4-epimerase activity	9.08E-04
23	GO:0042936: dipeptide transporter activity	9.08E-04
24	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.68E-03
25	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.68E-03
26	GO:0003978: UDP-glucose 4-epimerase activity	1.68E-03
27	GO:0004656: procollagen-proline 4-dioxygenase activity	1.68E-03
28	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.68E-03
29	GO:0005085: guanyl-nucleotide exchange factor activity	1.98E-03
30	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.98E-03
31	GO:0004033: aldo-keto reductase (NADP) activity	2.29E-03
32	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.43E-03
33	GO:0008417: fucosyltransferase activity	2.95E-03
34	GO:0015174: basic amino acid transmembrane transporter activity	3.31E-03
35	GO:0031490: chromatin DNA binding	3.31E-03
36	GO:0016844: strictosidine synthase activity	3.31E-03
37	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-03
38	GO:0000976: transcription regulatory region sequence-specific DNA binding	4.45E-03
39	GO:0015171: amino acid transmembrane transporter activity	4.64E-03
40	GO:0005388: calcium-transporting ATPase activity	4.86E-03
41	GO:0004022: alcohol dehydrogenase (NAD) activity	4.86E-03
42	GO:0005217: intracellular ligand-gated ion channel activity	5.71E-03
43	GO:0004970: ionotropic glutamate receptor activity	5.71E-03
44	GO:0015035: protein disulfide oxidoreductase activity	6.13E-03
45	GO:0001046: core promoter sequence-specific DNA binding	6.61E-03
46	GO:0031418: L-ascorbic acid binding	6.61E-03
47	GO:0005506: iron ion binding	7.31E-03
48	GO:0004499: N,N-dimethylaniline monooxygenase activity	9.07E-03
49	GO:0005451: monovalent cation:proton antiporter activity	1.01E-02
50	GO:0015299: solute:proton antiporter activity	1.12E-02
51	GO:0046872: metal ion binding	1.13E-02
52	GO:0015385: sodium:proton antiporter activity	1.36E-02
53	GO:0008483: transaminase activity	1.48E-02
54	GO:0051213: dioxygenase activity	1.61E-02
55	GO:0043531: ADP binding	1.75E-02
56	GO:0030247: polysaccharide binding	1.81E-02
57	GO:0016301: kinase activity	1.90E-02
58	GO:0030145: manganese ion binding	2.15E-02
59	GO:0052689: carboxylic ester hydrolase activity	2.19E-02
60	GO:0050661: NADP binding	2.52E-02
61	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.57E-02
62	GO:0044212: transcription regulatory region DNA binding	2.90E-02
63	GO:0005198: structural molecule activity	2.99E-02
64	GO:0016298: lipase activity	3.49E-02
65	GO:0045330: aspartyl esterase activity	3.66E-02
66	GO:0045735: nutrient reservoir activity	3.83E-02
67	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.92E-02
68	GO:0016491: oxidoreductase activity	4.07E-02
69	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.10E-02
70	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.10E-02
71	GO:0030599: pectinesterase activity	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0005950: anthranilate synthase complex	2.90E-04
2	GO:0016021: integral component of membrane	5.89E-04
3	GO:0005770: late endosome	8.52E-04
4	GO:0032580: Golgi cisterna membrane	1.25E-03
5	GO:0032588: trans-Golgi network membrane	1.41E-03
6	GO:0005765: lysosomal membrane	4.06E-03
7	GO:0000785: chromatin	1.30E-02
8	GO:0071944: cell periphery	1.36E-02
9	GO:0000325: plant-type vacuole	2.15E-02
10	GO:0005576: extracellular region	2.65E-02
11	GO:0043231: intracellular membrane-bounded organelle	3.23E-02
12	GO:0005829: cytosol	4.04E-02