co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.95E-07
6	GO:0015979: photosynthesis	5.87E-06
7	GO:0042335: cuticle development	1.17E-04
8	GO:0010196: nonphotochemical quenching	1.29E-04
9	GO:0043953: protein transport by the Tat complex	2.00E-04
10	GO:1904966: positive regulation of vitamin E biosynthetic process	2.00E-04
11	GO:0000481: maturation of 5S rRNA	2.00E-04
12	GO:1904964: positive regulation of phytol biosynthetic process	2.00E-04
13	GO:0065002: intracellular protein transmembrane transport	2.00E-04
14	GO:0006106: fumarate metabolic process	2.00E-04
15	GO:0034337: RNA folding	2.00E-04
16	GO:0071588: hydrogen peroxide mediated signaling pathway	2.00E-04
17	GO:0071482: cellular response to light stimulus	2.04E-04
18	GO:0010027: thylakoid membrane organization	2.94E-04
19	GO:0009735: response to cytokinin	3.26E-04
20	GO:0018298: protein-chromophore linkage	4.18E-04
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.48E-04
22	GO:0035304: regulation of protein dephosphorylation	4.48E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	4.48E-04
24	GO:0080005: photosystem stoichiometry adjustment	4.48E-04
25	GO:0010115: regulation of abscisic acid biosynthetic process	4.48E-04
26	GO:1900871: chloroplast mRNA modification	4.48E-04
27	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.48E-04
28	GO:0006869: lipid transport	5.01E-04
29	GO:0009631: cold acclimation	5.04E-04
30	GO:0010207: photosystem II assembly	5.92E-04
31	GO:0055085: transmembrane transport	6.40E-04
32	GO:1902448: positive regulation of shade avoidance	7.29E-04
33	GO:0006000: fructose metabolic process	7.29E-04
34	GO:0090391: granum assembly	7.29E-04
35	GO:0006518: peptide metabolic process	7.29E-04
36	GO:0008152: metabolic process	7.34E-04
37	GO:0010025: wax biosynthetic process	7.36E-04
38	GO:0006833: water transport	7.36E-04
39	GO:0009152: purine ribonucleotide biosynthetic process	1.04E-03
40	GO:0046653: tetrahydrofolate metabolic process	1.04E-03
41	GO:0080170: hydrogen peroxide transmembrane transport	1.04E-03
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.04E-03
43	GO:2001141: regulation of RNA biosynthetic process	1.04E-03
44	GO:0009765: photosynthesis, light harvesting	1.38E-03
45	GO:0045727: positive regulation of translation	1.38E-03
46	GO:0015994: chlorophyll metabolic process	1.38E-03
47	GO:0010021: amylopectin biosynthetic process	1.38E-03
48	GO:0010109: regulation of photosynthesis	1.38E-03
49	GO:0034220: ion transmembrane transport	1.47E-03
50	GO:0009416: response to light stimulus	1.68E-03
51	GO:0006564: L-serine biosynthetic process	1.76E-03
52	GO:0016554: cytidine to uridine editing	2.17E-03
53	GO:0009913: epidermal cell differentiation	2.17E-03
54	GO:0006655: phosphatidylglycerol biosynthetic process	2.17E-03
55	GO:0010190: cytochrome b6f complex assembly	2.17E-03
56	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.17E-03
57	GO:0010337: regulation of salicylic acid metabolic process	2.17E-03
58	GO:0006561: proline biosynthetic process	2.17E-03
59	GO:0042549: photosystem II stabilization	2.17E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	2.60E-03
62	GO:0042744: hydrogen peroxide catabolic process	2.74E-03
63	GO:1900057: positive regulation of leaf senescence	3.06E-03
64	GO:0015693: magnesium ion transport	3.06E-03
65	GO:0015995: chlorophyll biosynthetic process	3.29E-03
66	GO:0008610: lipid biosynthetic process	3.55E-03
67	GO:0032508: DNA duplex unwinding	3.55E-03
68	GO:0005975: carbohydrate metabolic process	3.66E-03
69	GO:0006002: fructose 6-phosphate metabolic process	4.06E-03
70	GO:0032544: plastid translation	4.06E-03
71	GO:0009637: response to blue light	4.61E-03
72	GO:0010205: photoinhibition	5.15E-03
73	GO:0009638: phototropism	5.15E-03
74	GO:1900865: chloroplast RNA modification	5.15E-03
75	GO:0042761: very long-chain fatty acid biosynthetic process	5.15E-03
76	GO:0055062: phosphate ion homeostasis	5.74E-03
77	GO:0006032: chitin catabolic process	5.74E-03
78	GO:0009688: abscisic acid biosynthetic process	5.74E-03
79	GO:0010114: response to red light	5.94E-03
80	GO:0000038: very long-chain fatty acid metabolic process	6.34E-03
81	GO:0019684: photosynthesis, light reaction	6.34E-03
82	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
83	GO:0006352: DNA-templated transcription, initiation	6.34E-03
84	GO:0009750: response to fructose	6.34E-03
85	GO:0006855: drug transmembrane transport	6.93E-03
86	GO:0016024: CDP-diacylglycerol biosynthetic process	6.96E-03
87	GO:0009785: blue light signaling pathway	7.61E-03
88	GO:0010628: positive regulation of gene expression	7.61E-03
89	GO:0006108: malate metabolic process	7.61E-03
90	GO:0009718: anthocyanin-containing compound biosynthetic process	7.61E-03
91	GO:0006094: gluconeogenesis	7.61E-03
92	GO:0005986: sucrose biosynthetic process	7.61E-03
93	GO:0006364: rRNA processing	8.01E-03
94	GO:0010143: cutin biosynthetic process	8.28E-03
95	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
96	GO:0009825: multidimensional cell growth	8.97E-03
97	GO:0010167: response to nitrate	8.97E-03
98	GO:0005985: sucrose metabolic process	8.97E-03
99	GO:0071732: cellular response to nitric oxide	8.97E-03
100	GO:0010053: root epidermal cell differentiation	8.97E-03
101	GO:0006636: unsaturated fatty acid biosynthetic process	9.68E-03
102	GO:0008299: isoprenoid biosynthetic process	1.12E-02
103	GO:0009695: jasmonic acid biosynthetic process	1.12E-02
104	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-02
105	GO:0031408: oxylipin biosynthetic process	1.19E-02
106	GO:0016998: cell wall macromolecule catabolic process	1.19E-02
107	GO:0035428: hexose transmembrane transport	1.27E-02
108	GO:0071369: cellular response to ethylene stimulus	1.35E-02
109	GO:0010182: sugar mediated signaling pathway	1.69E-02
110	GO:0046323: glucose import	1.69E-02
111	GO:0006633: fatty acid biosynthetic process	1.80E-02
112	GO:0019252: starch biosynthetic process	1.87E-02
113	GO:0008654: phospholipid biosynthetic process	1.87E-02
114	GO:0071554: cell wall organization or biogenesis	1.97E-02
115	GO:0000302: response to reactive oxygen species	1.97E-02
116	GO:0007623: circadian rhythm	1.98E-02
117	GO:0016032: viral process	2.06E-02
118	GO:0071281: cellular response to iron ion	2.16E-02
119	GO:0009567: double fertilization forming a zygote and endosperm	2.25E-02
120	GO:0007166: cell surface receptor signaling pathway	2.27E-02
121	GO:0042128: nitrate assimilation	2.76E-02
122	GO:0009658: chloroplast organization	3.07E-02
123	GO:0030244: cellulose biosynthetic process	3.09E-02
124	GO:0009409: response to cold	3.13E-02
125	GO:0000160: phosphorelay signal transduction system	3.20E-02
126	GO:0010218: response to far red light	3.31E-02
127	GO:0006810: transport	3.53E-02
128	GO:0009853: photorespiration	3.65E-02
129	GO:0034599: cellular response to oxidative stress	3.77E-02
130	GO:0006099: tricarboxylic acid cycle	3.77E-02
131	GO:0080167: response to karrikin	3.80E-02
132	GO:0045454: cell redox homeostasis	4.54E-02
133	GO:0009644: response to high light intensity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0010242: oxygen evolving activity	2.00E-04
5	GO:0004856: xylulokinase activity	2.00E-04
6	GO:0004321: fatty-acyl-CoA synthase activity	2.00E-04
7	GO:0004333: fumarate hydratase activity	2.00E-04
8	GO:0050139: nicotinate-N-glucosyltransferase activity	2.00E-04
9	GO:0016168: chlorophyll binding	3.17E-04
10	GO:0033201: alpha-1,4-glucan synthase activity	4.48E-04
11	GO:0004312: fatty acid synthase activity	4.48E-04
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.48E-04
13	GO:0047746: chlorophyllase activity	4.48E-04
14	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.48E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	4.48E-04
16	GO:0004565: beta-galactosidase activity	5.25E-04
17	GO:0004022: alcohol dehydrogenase (NAD) activity	5.25E-04
18	GO:0008266: poly(U) RNA binding	5.92E-04
19	GO:0004373: glycogen (starch) synthase activity	7.29E-04
20	GO:0004751: ribose-5-phosphate isomerase activity	7.29E-04
21	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.29E-04
22	GO:0070402: NADPH binding	7.29E-04
23	GO:0008864: formyltetrahydrofolate deformylase activity	7.29E-04
24	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.29E-04
25	GO:0005528: FK506 binding	8.13E-04
26	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.62E-04
27	GO:0016851: magnesium chelatase activity	1.04E-03
28	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.04E-03
29	GO:0001872: (1->3)-beta-D-glucan binding	1.04E-03
30	GO:0008289: lipid binding	1.10E-03
31	GO:0022891: substrate-specific transmembrane transporter activity	1.16E-03
32	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.38E-03
33	GO:0004045: aminoacyl-tRNA hydrolase activity	1.38E-03
34	GO:0016987: sigma factor activity	1.38E-03
35	GO:0043495: protein anchor	1.38E-03
36	GO:0009011: starch synthase activity	1.38E-03
37	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.38E-03
38	GO:0001053: plastid sigma factor activity	1.38E-03
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.76E-03
40	GO:0016746: transferase activity, transferring acyl groups	1.82E-03
41	GO:0004130: cytochrome-c peroxidase activity	2.17E-03
42	GO:0042578: phosphoric ester hydrolase activity	2.17E-03
43	GO:0016688: L-ascorbate peroxidase activity	2.17E-03
44	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.17E-03
45	GO:0016787: hydrolase activity	2.30E-03
46	GO:0015250: water channel activity	2.80E-03
47	GO:0019899: enzyme binding	3.06E-03
48	GO:0030247: polysaccharide binding	3.29E-03
49	GO:0043022: ribosome binding	3.55E-03
50	GO:0016207: 4-coumarate-CoA ligase activity	4.60E-03
51	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.60E-03
52	GO:0004568: chitinase activity	5.74E-03
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.93E-03
54	GO:0008081: phosphoric diester hydrolase activity	7.61E-03
55	GO:0015095: magnesium ion transmembrane transporter activity	7.61E-03
56	GO:0009982: pseudouridine synthase activity	7.61E-03
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.68E-03
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.68E-03
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.68E-03
60	GO:0031409: pigment binding	9.68E-03
61	GO:0005355: glucose transmembrane transporter activity	1.78E-02
62	GO:0050662: coenzyme binding	1.78E-02
63	GO:0016853: isomerase activity	1.78E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.85E-02
65	GO:0000156: phosphorelay response regulator activity	2.16E-02
66	GO:0016791: phosphatase activity	2.25E-02
67	GO:0005215: transporter activity	2.33E-02
68	GO:0016413: O-acetyltransferase activity	2.45E-02
69	GO:0016597: amino acid binding	2.45E-02
70	GO:0042802: identical protein binding	2.52E-02
71	GO:0004721: phosphoprotein phosphatase activity	2.87E-02
72	GO:0004601: peroxidase activity	3.07E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	3.13E-02
74	GO:0015238: drug transmembrane transporter activity	3.20E-02
75	GO:0004222: metalloendopeptidase activity	3.31E-02
76	GO:0030145: manganese ion binding	3.42E-02
77	GO:0003746: translation elongation factor activity	3.65E-02
78	GO:0003993: acid phosphatase activity	3.77E-02
79	GO:0030246: carbohydrate binding	3.92E-02
80	GO:0052689: carboxylic ester hydrolase activity	4.19E-02
81	GO:0004871: signal transducer activity	4.75E-02
82	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	8.71E-31
4	GO:0009535: chloroplast thylakoid membrane	4.38E-18
5	GO:0009534: chloroplast thylakoid	6.81E-16
6	GO:0009570: chloroplast stroma	2.90E-14
7	GO:0009941: chloroplast envelope	9.97E-12
8	GO:0009579: thylakoid	2.01E-06
9	GO:0009543: chloroplast thylakoid lumen	2.66E-06
10	GO:0010287: plastoglobule	3.50E-05
11	GO:0031977: thylakoid lumen	6.93E-05
12	GO:0009515: granal stacked thylakoid	2.00E-04
13	GO:0045239: tricarboxylic acid cycle enzyme complex	2.00E-04
14	GO:0031361: integral component of thylakoid membrane	2.00E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-04
16	GO:0010007: magnesium chelatase complex	7.29E-04
17	GO:0033281: TAT protein transport complex	7.29E-04
18	GO:0009654: photosystem II oxygen evolving complex	8.95E-04
19	GO:0042651: thylakoid membrane	8.95E-04
20	GO:0031969: chloroplast membrane	1.60E-03
21	GO:0009523: photosystem II	1.82E-03
22	GO:0019898: extrinsic component of membrane	1.82E-03
23	GO:0009501: amyloplast	3.55E-03
24	GO:0008180: COP9 signalosome	4.60E-03
25	GO:0046658: anchored component of plasma membrane	5.00E-03
26	GO:0032040: small-subunit processome	6.96E-03
27	GO:0016021: integral component of membrane	7.66E-03
28	GO:0030095: chloroplast photosystem II	8.28E-03
29	GO:0016020: membrane	8.30E-03
30	GO:0030076: light-harvesting complex	8.97E-03
31	GO:0031225: anchored component of membrane	1.36E-02
32	GO:0009522: photosystem I	1.78E-02
33	GO:0048046: apoplast	1.99E-02
34	GO:0010319: stromule	2.35E-02
35	GO:0030529: intracellular ribonucleoprotein complex	2.55E-02
36	GO:0009536: plastid	2.71E-02
37	GO:0009505: plant-type cell wall	2.80E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.09E-02