GO Enrichment Analysis of Co-expressed Genes with
AT3G28080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009249: protein lipoylation | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 6 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.86E-09 |
| 7 | GO:0009853: photorespiration | 5.33E-07 |
| 8 | GO:0071482: cellular response to light stimulus | 1.76E-05 |
| 9 | GO:0006438: valyl-tRNA aminoacylation | 4.04E-05 |
| 10 | GO:0080093: regulation of photorespiration | 4.04E-05 |
| 11 | GO:0031998: regulation of fatty acid beta-oxidation | 4.04E-05 |
| 12 | GO:0009767: photosynthetic electron transport chain | 5.43E-05 |
| 13 | GO:0019253: reductive pentose-phosphate cycle | 6.26E-05 |
| 14 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.00E-04 |
| 15 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.00E-04 |
| 16 | GO:0016117: carotenoid biosynthetic process | 1.65E-04 |
| 17 | GO:0006000: fructose metabolic process | 1.73E-04 |
| 18 | GO:0009416: response to light stimulus | 2.53E-04 |
| 19 | GO:0033014: tetrapyrrole biosynthetic process | 2.55E-04 |
| 20 | GO:2001141: regulation of RNA biosynthetic process | 2.55E-04 |
| 21 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.55E-04 |
| 22 | GO:0046686: response to cadmium ion | 2.69E-04 |
| 23 | GO:0006546: glycine catabolic process | 3.43E-04 |
| 24 | GO:0009902: chloroplast relocation | 3.43E-04 |
| 25 | GO:0016120: carotene biosynthetic process | 4.37E-04 |
| 26 | GO:0006544: glycine metabolic process | 4.37E-04 |
| 27 | GO:0010236: plastoquinone biosynthetic process | 4.37E-04 |
| 28 | GO:0006097: glyoxylate cycle | 4.37E-04 |
| 29 | GO:0009107: lipoate biosynthetic process | 4.37E-04 |
| 30 | GO:1902183: regulation of shoot apical meristem development | 4.37E-04 |
| 31 | GO:0016123: xanthophyll biosynthetic process | 4.37E-04 |
| 32 | GO:0006563: L-serine metabolic process | 5.37E-04 |
| 33 | GO:0009854: oxidative photosynthetic carbon pathway | 6.40E-04 |
| 34 | GO:0009744: response to sucrose | 7.35E-04 |
| 35 | GO:0048564: photosystem I assembly | 8.61E-04 |
| 36 | GO:0016559: peroxisome fission | 8.61E-04 |
| 37 | GO:0006002: fructose 6-phosphate metabolic process | 9.77E-04 |
| 38 | GO:0010100: negative regulation of photomorphogenesis | 9.77E-04 |
| 39 | GO:2000024: regulation of leaf development | 1.10E-03 |
| 40 | GO:0006783: heme biosynthetic process | 1.10E-03 |
| 41 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.22E-03 |
| 42 | GO:0035999: tetrahydrofolate interconversion | 1.22E-03 |
| 43 | GO:0031425: chloroplast RNA processing | 1.22E-03 |
| 44 | GO:0006810: transport | 1.34E-03 |
| 45 | GO:0009773: photosynthetic electron transport in photosystem I | 1.49E-03 |
| 46 | GO:0019684: photosynthesis, light reaction | 1.49E-03 |
| 47 | GO:0006352: DNA-templated transcription, initiation | 1.49E-03 |
| 48 | GO:0005986: sucrose biosynthetic process | 1.77E-03 |
| 49 | GO:0006108: malate metabolic process | 1.77E-03 |
| 50 | GO:0006006: glucose metabolic process | 1.77E-03 |
| 51 | GO:0006094: gluconeogenesis | 1.77E-03 |
| 52 | GO:0055114: oxidation-reduction process | 2.02E-03 |
| 53 | GO:0007031: peroxisome organization | 2.07E-03 |
| 54 | GO:0042343: indole glucosinolate metabolic process | 2.07E-03 |
| 55 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.39E-03 |
| 56 | GO:0006289: nucleotide-excision repair | 2.39E-03 |
| 57 | GO:0006418: tRNA aminoacylation for protein translation | 2.55E-03 |
| 58 | GO:0098542: defense response to other organism | 2.72E-03 |
| 59 | GO:0016226: iron-sulfur cluster assembly | 2.89E-03 |
| 60 | GO:0080092: regulation of pollen tube growth | 2.89E-03 |
| 61 | GO:0042631: cellular response to water deprivation | 3.61E-03 |
| 62 | GO:0019252: starch biosynthetic process | 4.19E-03 |
| 63 | GO:0000302: response to reactive oxygen species | 4.38E-03 |
| 64 | GO:0080167: response to karrikin | 4.42E-03 |
| 65 | GO:0009409: response to cold | 6.32E-03 |
| 66 | GO:0009817: defense response to fungus, incompatible interaction | 6.77E-03 |
| 67 | GO:0048481: plant ovule development | 6.77E-03 |
| 68 | GO:0005975: carbohydrate metabolic process | 7.30E-03 |
| 69 | GO:0016051: carbohydrate biosynthetic process | 7.99E-03 |
| 70 | GO:0006099: tricarboxylic acid cycle | 8.24E-03 |
| 71 | GO:0009735: response to cytokinin | 1.06E-02 |
| 72 | GO:0006096: glycolytic process | 1.32E-02 |
| 73 | GO:0048316: seed development | 1.35E-02 |
| 74 | GO:0009626: plant-type hypersensitive response | 1.38E-02 |
| 75 | GO:0018105: peptidyl-serine phosphorylation | 1.54E-02 |
| 76 | GO:0009742: brassinosteroid mediated signaling pathway | 1.57E-02 |
| 77 | GO:0040008: regulation of growth | 2.15E-02 |
| 78 | GO:0007623: circadian rhythm | 2.22E-02 |
| 79 | GO:0010468: regulation of gene expression | 2.52E-02 |
| 80 | GO:0009658: chloroplast organization | 3.04E-02 |
| 81 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.63E-02 |
| 82 | GO:0046777: protein autophosphorylation | 3.71E-02 |
| 83 | GO:0044550: secondary metabolite biosynthetic process | 3.76E-02 |
| 84 | GO:0045454: cell redox homeostasis | 4.02E-02 |
| 85 | GO:0045892: negative regulation of transcription, DNA-templated | 4.07E-02 |
| 86 | GO:0009751: response to salicylic acid | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 2 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 3 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 6 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 7 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 8 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 9 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 9.85E-07 |
| 10 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 7.36E-06 |
| 11 | GO:0004325: ferrochelatase activity | 4.04E-05 |
| 12 | GO:0004832: valine-tRNA ligase activity | 4.04E-05 |
| 13 | GO:0008266: poly(U) RNA binding | 6.26E-05 |
| 14 | GO:0016415: octanoyltransferase activity | 1.00E-04 |
| 15 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.00E-04 |
| 16 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.00E-04 |
| 17 | GO:0010291: carotene beta-ring hydroxylase activity | 1.00E-04 |
| 18 | GO:0017118: lipoyltransferase activity | 1.00E-04 |
| 19 | GO:0032947: protein complex scaffold | 1.73E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.73E-04 |
| 21 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 2.55E-04 |
| 22 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.43E-04 |
| 23 | GO:0008453: alanine-glyoxylate transaminase activity | 3.43E-04 |
| 24 | GO:0016987: sigma factor activity | 3.43E-04 |
| 25 | GO:0001053: plastid sigma factor activity | 3.43E-04 |
| 26 | GO:0004372: glycine hydroxymethyltransferase activity | 4.37E-04 |
| 27 | GO:0042578: phosphoric ester hydrolase activity | 5.37E-04 |
| 28 | GO:0016615: malate dehydrogenase activity | 5.37E-04 |
| 29 | GO:0030060: L-malate dehydrogenase activity | 6.40E-04 |
| 30 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 6.40E-04 |
| 31 | GO:0005198: structural molecule activity | 8.22E-04 |
| 32 | GO:0051287: NAD binding | 8.82E-04 |
| 33 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.49E-03 |
| 34 | GO:0005528: FK506 binding | 2.39E-03 |
| 35 | GO:0051536: iron-sulfur cluster binding | 2.39E-03 |
| 36 | GO:0004812: aminoacyl-tRNA ligase activity | 3.42E-03 |
| 37 | GO:0005509: calcium ion binding | 3.88E-03 |
| 38 | GO:0005506: iron ion binding | 4.22E-03 |
| 39 | GO:0048038: quinone binding | 4.38E-03 |
| 40 | GO:0004518: nuclease activity | 4.58E-03 |
| 41 | GO:0016597: amino acid binding | 5.42E-03 |
| 42 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 6.09E-03 |
| 43 | GO:0004683: calmodulin-dependent protein kinase activity | 6.31E-03 |
| 44 | GO:0050897: cobalt ion binding | 7.49E-03 |
| 45 | GO:0003746: translation elongation factor activity | 7.99E-03 |
| 46 | GO:0050661: NADP binding | 8.75E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.06E-02 |
| 48 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.18E-02 |
| 49 | GO:0016746: transferase activity, transferring acyl groups | 1.54E-02 |
| 50 | GO:0019825: oxygen binding | 1.65E-02 |
| 51 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.80E-02 |
| 52 | GO:0030170: pyridoxal phosphate binding | 1.91E-02 |
| 53 | GO:0003824: catalytic activity | 2.58E-02 |
| 54 | GO:0042802: identical protein binding | 2.64E-02 |
| 55 | GO:0050660: flavin adenine dinucleotide binding | 3.37E-02 |
| 56 | GO:0020037: heme binding | 3.70E-02 |
| 57 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 4.02E-02 |
| 58 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 4.25E-02 |
| 59 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 4.34E-02 |
| 60 | GO:0016787: hydrolase activity | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0042579: microbody | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.24E-18 |
| 4 | GO:0009570: chloroplast stroma | 3.25E-08 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.28E-07 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 7.29E-07 |
| 7 | GO:0005960: glycine cleavage complex | 9.85E-07 |
| 8 | GO:0009941: chloroplast envelope | 1.06E-06 |
| 9 | GO:0048046: apoplast | 4.39E-06 |
| 10 | GO:0010319: stromule | 9.45E-06 |
| 11 | GO:0009534: chloroplast thylakoid | 3.61E-05 |
| 12 | GO:0031969: chloroplast membrane | 4.61E-05 |
| 13 | GO:0030095: chloroplast photosystem II | 6.26E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.02E-04 |
| 15 | GO:0009543: chloroplast thylakoid lumen | 1.47E-04 |
| 16 | GO:0009509: chromoplast | 1.73E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 2.26E-04 |
| 18 | GO:0005777: peroxisome | 3.17E-04 |
| 19 | GO:0055035: plastid thylakoid membrane | 4.37E-04 |
| 20 | GO:0009840: chloroplastic endopeptidase Clp complex | 6.40E-04 |
| 21 | GO:0005779: integral component of peroxisomal membrane | 9.77E-04 |
| 22 | GO:0005759: mitochondrial matrix | 2.12E-03 |
| 23 | GO:0005778: peroxisomal membrane | 5.21E-03 |
| 24 | GO:0009707: chloroplast outer membrane | 6.77E-03 |
| 25 | GO:0005747: mitochondrial respiratory chain complex I | 1.35E-02 |
| 26 | GO:0009579: thylakoid | 1.38E-02 |
| 27 | GO:0005623: cell | 1.80E-02 |
| 28 | GO:0016020: membrane | 4.91E-02 |