GO Enrichment Analysis of Co-expressed Genes with
AT3G28040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010027: thylakoid membrane organization | 2.48E-05 |
| 2 | GO:0060627: regulation of vesicle-mediated transport | 5.79E-05 |
| 3 | GO:0043087: regulation of GTPase activity | 5.79E-05 |
| 4 | GO:1902458: positive regulation of stomatal opening | 5.79E-05 |
| 5 | GO:0042254: ribosome biogenesis | 7.69E-05 |
| 6 | GO:0010207: photosystem II assembly | 1.06E-04 |
| 7 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.41E-04 |
| 8 | GO:0010115: regulation of abscisic acid biosynthetic process | 1.41E-04 |
| 9 | GO:0090391: granum assembly | 2.40E-04 |
| 10 | GO:0006696: ergosterol biosynthetic process | 2.40E-04 |
| 11 | GO:0010182: sugar mediated signaling pathway | 3.13E-04 |
| 12 | GO:0006166: purine ribonucleoside salvage | 3.49E-04 |
| 13 | GO:0071484: cellular response to light intensity | 3.49E-04 |
| 14 | GO:0051639: actin filament network formation | 3.49E-04 |
| 15 | GO:0006168: adenine salvage | 3.49E-04 |
| 16 | GO:0051764: actin crosslink formation | 4.66E-04 |
| 17 | GO:0015846: polyamine transport | 4.66E-04 |
| 18 | GO:0044209: AMP salvage | 5.92E-04 |
| 19 | GO:0016120: carotene biosynthetic process | 5.92E-04 |
| 20 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.92E-04 |
| 21 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 7.24E-04 |
| 22 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 7.24E-04 |
| 23 | GO:0035435: phosphate ion transmembrane transport | 7.24E-04 |
| 24 | GO:0006561: proline biosynthetic process | 7.24E-04 |
| 25 | GO:0010405: arabinogalactan protein metabolic process | 7.24E-04 |
| 26 | GO:0006694: steroid biosynthetic process | 8.63E-04 |
| 27 | GO:0009395: phospholipid catabolic process | 1.01E-03 |
| 28 | GO:0010196: nonphotochemical quenching | 1.01E-03 |
| 29 | GO:0006605: protein targeting | 1.16E-03 |
| 30 | GO:2000070: regulation of response to water deprivation | 1.16E-03 |
| 31 | GO:0015996: chlorophyll catabolic process | 1.32E-03 |
| 32 | GO:0007186: G-protein coupled receptor signaling pathway | 1.32E-03 |
| 33 | GO:0032544: plastid translation | 1.32E-03 |
| 34 | GO:0009808: lignin metabolic process | 1.32E-03 |
| 35 | GO:0006412: translation | 1.41E-03 |
| 36 | GO:0042538: hyperosmotic salinity response | 1.42E-03 |
| 37 | GO:0010206: photosystem II repair | 1.48E-03 |
| 38 | GO:0010205: photoinhibition | 1.65E-03 |
| 39 | GO:0009688: abscisic acid biosynthetic process | 1.83E-03 |
| 40 | GO:0009750: response to fructose | 2.02E-03 |
| 41 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.02E-03 |
| 42 | GO:0045037: protein import into chloroplast stroma | 2.21E-03 |
| 43 | GO:0009725: response to hormone | 2.41E-03 |
| 44 | GO:0010143: cutin biosynthetic process | 2.62E-03 |
| 45 | GO:0010025: wax biosynthetic process | 3.04E-03 |
| 46 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.04E-03 |
| 47 | GO:0000027: ribosomal large subunit assembly | 3.26E-03 |
| 48 | GO:0051017: actin filament bundle assembly | 3.26E-03 |
| 49 | GO:0031408: oxylipin biosynthetic process | 3.72E-03 |
| 50 | GO:0009306: protein secretion | 4.44E-03 |
| 51 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 6.02E-03 |
| 52 | GO:0016132: brassinosteroid biosynthetic process | 6.02E-03 |
| 53 | GO:1901657: glycosyl compound metabolic process | 6.59E-03 |
| 54 | GO:0042128: nitrate assimilation | 8.40E-03 |
| 55 | GO:0016311: dephosphorylation | 9.03E-03 |
| 56 | GO:0018298: protein-chromophore linkage | 9.36E-03 |
| 57 | GO:0010311: lateral root formation | 9.69E-03 |
| 58 | GO:0009834: plant-type secondary cell wall biogenesis | 1.00E-02 |
| 59 | GO:0006631: fatty acid metabolic process | 1.25E-02 |
| 60 | GO:0009744: response to sucrose | 1.32E-02 |
| 61 | GO:0009644: response to high light intensity | 1.40E-02 |
| 62 | GO:0006364: rRNA processing | 1.63E-02 |
| 63 | GO:0006486: protein glycosylation | 1.63E-02 |
| 64 | GO:0006857: oligopeptide transport | 1.71E-02 |
| 65 | GO:0006633: fatty acid biosynthetic process | 2.89E-02 |
| 66 | GO:0007623: circadian rhythm | 3.09E-02 |
| 67 | GO:0009451: RNA modification | 3.15E-02 |
| 68 | GO:0009414: response to water deprivation | 3.65E-02 |
| 69 | GO:0009826: unidimensional cell growth | 4.11E-02 |
| 70 | GO:0009658: chloroplast organization | 4.22E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0019808: polyamine binding | 0.00E+00 |
| 5 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 6 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 7 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 5.79E-05 |
| 8 | GO:0003735: structural constituent of ribosome | 1.98E-04 |
| 9 | GO:0019843: rRNA binding | 2.79E-04 |
| 10 | GO:0003999: adenine phosphoribosyltransferase activity | 3.49E-04 |
| 11 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 7.24E-04 |
| 12 | GO:0102391: decanoate--CoA ligase activity | 8.63E-04 |
| 13 | GO:0003993: acid phosphatase activity | 9.36E-04 |
| 14 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.01E-03 |
| 15 | GO:0030674: protein binding, bridging | 1.16E-03 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.32E-03 |
| 17 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.32E-03 |
| 18 | GO:0008378: galactosyltransferase activity | 2.21E-03 |
| 19 | GO:0015114: phosphate ion transmembrane transporter activity | 2.41E-03 |
| 20 | GO:0004565: beta-galactosidase activity | 2.41E-03 |
| 21 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.41E-03 |
| 22 | GO:0016758: transferase activity, transferring hexosyl groups | 2.61E-03 |
| 23 | GO:0008131: primary amine oxidase activity | 2.62E-03 |
| 24 | GO:0008146: sulfotransferase activity | 2.82E-03 |
| 25 | GO:0005528: FK506 binding | 3.26E-03 |
| 26 | GO:0022891: substrate-specific transmembrane transporter activity | 4.20E-03 |
| 27 | GO:0004872: receptor activity | 5.75E-03 |
| 28 | GO:0016788: hydrolase activity, acting on ester bonds | 5.77E-03 |
| 29 | GO:0051015: actin filament binding | 6.59E-03 |
| 30 | GO:0016168: chlorophyll binding | 8.08E-03 |
| 31 | GO:0102483: scopolin beta-glucosidase activity | 8.71E-03 |
| 32 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 9.36E-03 |
| 33 | GO:0005096: GTPase activator activity | 9.69E-03 |
| 34 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.04E-02 |
| 35 | GO:0008422: beta-glucosidase activity | 1.18E-02 |
| 36 | GO:0035091: phosphatidylinositol binding | 1.40E-02 |
| 37 | GO:0015293: symporter activity | 1.44E-02 |
| 38 | GO:0003690: double-stranded DNA binding | 1.67E-02 |
| 39 | GO:0003777: microtubule motor activity | 1.75E-02 |
| 40 | GO:0003779: actin binding | 2.05E-02 |
| 41 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.44E-02 |
| 42 | GO:0030246: carbohydrate binding | 2.49E-02 |
| 43 | GO:0008168: methyltransferase activity | 4.11E-02 |
| 44 | GO:0005215: transporter activity | 4.12E-02 |
| 45 | GO:0050660: flavin adenine dinucleotide binding | 4.68E-02 |
| 46 | GO:0016491: oxidoreductase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042597: periplasmic space | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.05E-07 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.47E-06 |
| 4 | GO:0005840: ribosome | 4.25E-05 |
| 5 | GO:0009941: chloroplast envelope | 5.44E-05 |
| 6 | GO:0009515: granal stacked thylakoid | 5.79E-05 |
| 7 | GO:0009528: plastid inner membrane | 2.40E-04 |
| 8 | GO:0032432: actin filament bundle | 3.49E-04 |
| 9 | GO:0009527: plastid outer membrane | 4.66E-04 |
| 10 | GO:0009534: chloroplast thylakoid | 7.10E-04 |
| 11 | GO:0015934: large ribosomal subunit | 8.23E-04 |
| 12 | GO:0031969: chloroplast membrane | 9.57E-04 |
| 13 | GO:0005884: actin filament | 2.02E-03 |
| 14 | GO:0009570: chloroplast stroma | 2.23E-03 |
| 15 | GO:0009574: preprophase band | 2.41E-03 |
| 16 | GO:0030095: chloroplast photosystem II | 2.62E-03 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 2.67E-03 |
| 18 | GO:0009532: plastid stroma | 3.72E-03 |
| 19 | GO:0009579: thylakoid | 4.00E-03 |
| 20 | GO:0009523: photosystem II | 5.75E-03 |
| 21 | GO:0010319: stromule | 7.18E-03 |
| 22 | GO:0009295: nucleoid | 7.18E-03 |
| 23 | GO:0009707: chloroplast outer membrane | 9.36E-03 |
| 24 | GO:0009536: plastid | 1.01E-02 |
| 25 | GO:0031977: thylakoid lumen | 1.25E-02 |
| 26 | GO:0022626: cytosolic ribosome | 1.77E-02 |
| 27 | GO:0016021: integral component of membrane | 1.84E-02 |
| 28 | GO:0005773: vacuole | 1.92E-02 |
| 29 | GO:0005874: microtubule | 4.80E-02 |