co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
3	GO:0019370: leukotriene biosynthetic process	0.00E+00
4	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0009658: chloroplast organization	1.65E-06
7	GO:0016117: carotenoid biosynthetic process	3.50E-06
8	GO:0032544: plastid translation	3.95E-06
9	GO:0018119: peptidyl-cysteine S-nitrosylation	1.30E-05
10	GO:0043572: plastid fission	1.53E-05
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.53E-05
12	GO:0010020: chloroplast fission	2.52E-05
13	GO:0019253: reductive pentose-phosphate cycle	2.52E-05
14	GO:0019464: glycine decarboxylation via glycine cleavage system	2.82E-05
15	GO:0006546: glycine catabolic process	2.82E-05
16	GO:0016123: xanthophyll biosynthetic process	4.56E-05
17	GO:0006810: transport	5.48E-05
18	GO:0060627: regulation of vesicle-mediated transport	1.95E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	1.95E-04
20	GO:0010480: microsporocyte differentiation	1.95E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	1.95E-04
22	GO:0043087: regulation of GTPase activity	1.95E-04
23	GO:1902458: positive regulation of stomatal opening	1.95E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	1.95E-04
25	GO:0006412: translation	2.34E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	3.91E-04
27	GO:0043039: tRNA aminoacylation	4.38E-04
28	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.38E-04
29	GO:0080183: response to photooxidative stress	4.38E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.38E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.38E-04
32	GO:0045037: protein import into chloroplast stroma	4.48E-04
33	GO:0009767: photosynthetic electron transport chain	5.09E-04
34	GO:0010207: photosystem II assembly	5.74E-04
35	GO:0006000: fructose metabolic process	7.14E-04
36	GO:0001887: selenium compound metabolic process	7.14E-04
37	GO:0006518: peptide metabolic process	7.14E-04
38	GO:0006696: ergosterol biosynthetic process	7.14E-04
39	GO:2001295: malonyl-CoA biosynthetic process	7.14E-04
40	GO:0090506: axillary shoot meristem initiation	7.14E-04
41	GO:0007017: microtubule-based process	8.68E-04
42	GO:0061077: chaperone-mediated protein folding	9.50E-04
43	GO:0051085: chaperone mediated protein folding requiring cofactor	1.02E-03
44	GO:0019048: modulation by virus of host morphology or physiology	1.02E-03
45	GO:0031048: chromatin silencing by small RNA	1.02E-03
46	GO:0016556: mRNA modification	1.02E-03
47	GO:0055070: copper ion homeostasis	1.02E-03
48	GO:0042254: ribosome biogenesis	1.13E-03
49	GO:0006096: glycolytic process	1.33E-03
50	GO:0009765: photosynthesis, light harvesting	1.35E-03
51	GO:0045727: positive regulation of translation	1.35E-03
52	GO:2000122: negative regulation of stomatal complex development	1.35E-03
53	GO:0015846: polyamine transport	1.35E-03
54	GO:0051567: histone H3-K9 methylation	1.35E-03
55	GO:0009902: chloroplast relocation	1.35E-03
56	GO:0010037: response to carbon dioxide	1.35E-03
57	GO:0006542: glutamine biosynthetic process	1.35E-03
58	GO:0019676: ammonia assimilation cycle	1.35E-03
59	GO:0015976: carbon utilization	1.35E-03
60	GO:0000413: protein peptidyl-prolyl isomerization	1.42E-03
61	GO:0016120: carotene biosynthetic process	1.72E-03
62	GO:0006656: phosphatidylcholine biosynthetic process	1.72E-03
63	GO:0010236: plastoquinone biosynthetic process	1.72E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	1.72E-03
65	GO:0045454: cell redox homeostasis	2.00E-03
66	GO:0007264: small GTPase mediated signal transduction	2.01E-03
67	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.12E-03
68	GO:0010190: cytochrome b6f complex assembly	2.12E-03
69	GO:0032973: amino acid export	2.12E-03
70	GO:0016458: gene silencing	2.12E-03
71	GO:0009793: embryo development ending in seed dormancy	2.53E-03
72	GO:0009955: adaxial/abaxial pattern specification	2.54E-03
73	GO:0010067: procambium histogenesis	2.54E-03
74	GO:0042026: protein refolding	2.54E-03
75	GO:0017148: negative regulation of translation	2.54E-03
76	GO:1901259: chloroplast rRNA processing	2.54E-03
77	GO:0010189: vitamin E biosynthetic process	2.54E-03
78	GO:0009854: oxidative photosynthetic carbon pathway	2.54E-03
79	GO:0010019: chloroplast-nucleus signaling pathway	2.54E-03
80	GO:0010555: response to mannitol	2.54E-03
81	GO:0009409: response to cold	2.74E-03
82	GO:0043090: amino acid import	3.00E-03
83	GO:0048437: floral organ development	3.00E-03
84	GO:0010196: nonphotochemical quenching	3.00E-03
85	GO:0048564: photosystem I assembly	3.47E-03
86	GO:0009819: drought recovery	3.47E-03
87	GO:0009642: response to light intensity	3.47E-03
88	GO:2000070: regulation of response to water deprivation	3.47E-03
89	GO:0018298: protein-chromophore linkage	3.53E-03
90	GO:0046686: response to cadmium ion	3.62E-03
91	GO:0006002: fructose 6-phosphate metabolic process	3.97E-03
92	GO:0015996: chlorophyll catabolic process	3.97E-03
93	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.97E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	3.97E-03
95	GO:0017004: cytochrome complex assembly	3.97E-03
96	GO:0009853: photorespiration	4.47E-03
97	GO:0010206: photosystem II repair	4.49E-03
98	GO:0080144: amino acid homeostasis	4.49E-03
99	GO:0055114: oxidation-reduction process	4.57E-03
100	GO:0034599: cellular response to oxidative stress	4.67E-03
101	GO:0009086: methionine biosynthetic process	5.04E-03
102	GO:0042742: defense response to bacterium	5.48E-03
103	GO:0019538: protein metabolic process	5.61E-03
104	GO:0030422: production of siRNA involved in RNA interference	5.61E-03
105	GO:0009735: response to cytokinin	5.75E-03
106	GO:0019684: photosynthesis, light reaction	6.20E-03
107	GO:0043085: positive regulation of catalytic activity	6.20E-03
108	GO:0000272: polysaccharide catabolic process	6.20E-03
109	GO:0048229: gametophyte development	6.20E-03
110	GO:0042538: hyperosmotic salinity response	7.22E-03
111	GO:0006006: glucose metabolic process	7.44E-03
112	GO:0010075: regulation of meristem growth	7.44E-03
113	GO:0006094: gluconeogenesis	7.44E-03
114	GO:0005986: sucrose biosynthetic process	7.44E-03
115	GO:0010223: secondary shoot formation	8.10E-03
116	GO:0009934: regulation of meristem structural organization	8.10E-03
117	GO:0046688: response to copper ion	8.77E-03
118	GO:0015979: photosynthesis	9.11E-03
119	GO:0006636: unsaturated fatty acid biosynthetic process	9.46E-03
120	GO:0006457: protein folding	9.75E-03
121	GO:0019344: cysteine biosynthetic process	1.02E-02
122	GO:0006418: tRNA aminoacylation for protein translation	1.09E-02
123	GO:0006306: DNA methylation	1.17E-02
124	GO:0007005: mitochondrion organization	1.24E-02
125	GO:0080092: regulation of pollen tube growth	1.24E-02
126	GO:0009411: response to UV	1.32E-02
127	GO:0001944: vasculature development	1.32E-02
128	GO:0019722: calcium-mediated signaling	1.40E-02
129	GO:0010089: xylem development	1.40E-02
130	GO:0048653: anther development	1.57E-02
131	GO:0042631: cellular response to water deprivation	1.57E-02
132	GO:0042335: cuticle development	1.57E-02
133	GO:0010087: phloem or xylem histogenesis	1.57E-02
134	GO:0008360: regulation of cell shape	1.65E-02
135	GO:0006662: glycerol ether metabolic process	1.65E-02
136	GO:0010182: sugar mediated signaling pathway	1.65E-02
137	GO:0006342: chromatin silencing	1.65E-02
138	GO:0007018: microtubule-based movement	1.74E-02
139	GO:0006633: fatty acid biosynthetic process	1.75E-02
140	GO:0006413: translational initiation	1.79E-02
141	GO:0019252: starch biosynthetic process	1.83E-02
142	GO:0071554: cell wall organization or biogenesis	1.92E-02
143	GO:0000302: response to reactive oxygen species	1.92E-02
144	GO:0010090: trichome morphogenesis	2.11E-02
145	GO:0010286: heat acclimation	2.30E-02
146	GO:0071805: potassium ion transmembrane transport	2.30E-02
147	GO:0007267: cell-cell signaling	2.30E-02
148	GO:0051607: defense response to virus	2.40E-02
149	GO:0010027: thylakoid membrane organization	2.50E-02
150	GO:0009816: defense response to bacterium, incompatible interaction	2.60E-02
151	GO:0009607: response to biotic stimulus	2.60E-02
152	GO:0009627: systemic acquired resistance	2.70E-02
153	GO:0015995: chlorophyll biosynthetic process	2.80E-02
154	GO:0009817: defense response to fungus, incompatible interaction	3.02E-02
155	GO:0008219: cell death	3.02E-02
156	GO:0010119: regulation of stomatal movement	3.34E-02
157	GO:0009631: cold acclimation	3.34E-02
158	GO:0007568: aging	3.34E-02
159	GO:0055085: transmembrane transport	3.51E-02
160	GO:0016051: carbohydrate biosynthetic process	3.57E-02
161	GO:0009637: response to blue light	3.57E-02
162	GO:0006508: proteolysis	3.72E-02
163	GO:0006839: mitochondrial transport	3.92E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
11	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
12	GO:0004463: leukotriene-A4 hydrolase activity	0.00E+00
13	GO:0019843: rRNA binding	4.52E-09
14	GO:0051920: peroxiredoxin activity	1.09E-06
15	GO:0016209: antioxidant activity	2.70E-06
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.37E-06
17	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.53E-05
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.82E-05
19	GO:0003735: structural constituent of ribosome	3.05E-05
20	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.36E-05
21	GO:0003924: GTPase activity	1.01E-04
22	GO:0004831: tyrosine-tRNA ligase activity	1.95E-04
23	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.95E-04
24	GO:0051996: squalene synthase activity	1.95E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.95E-04
26	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.95E-04
27	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.38E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.38E-04
29	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.38E-04
30	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.38E-04
31	GO:0008967: phosphoglycolate phosphatase activity	4.38E-04
32	GO:0010291: carotene beta-ring hydroxylase activity	4.38E-04
33	GO:0042389: omega-3 fatty acid desaturase activity	4.38E-04
34	GO:0004618: phosphoglycerate kinase activity	4.38E-04
35	GO:0010297: heteropolysaccharide binding	4.38E-04
36	GO:0004047: aminomethyltransferase activity	4.38E-04
37	GO:0004222: metalloendopeptidase activity	4.55E-04
38	GO:0003913: DNA photolyase activity	7.14E-04
39	GO:0003962: cystathionine gamma-synthase activity	7.14E-04
40	GO:0004148: dihydrolipoyl dehydrogenase activity	7.14E-04
41	GO:0004075: biotin carboxylase activity	7.14E-04
42	GO:0030267: glyoxylate reductase (NADP) activity	7.14E-04
43	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.14E-04
44	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.14E-04
45	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.14E-04
46	GO:0005515: protein binding	7.60E-04
47	GO:0005528: FK506 binding	7.89E-04
48	GO:0033612: receptor serine/threonine kinase binding	9.50E-04
49	GO:0005525: GTP binding	9.99E-04
50	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.02E-03
51	GO:0035197: siRNA binding	1.02E-03
52	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.35E-03
53	GO:1990137: plant seed peroxidase activity	1.35E-03
54	GO:0043495: protein anchor	1.35E-03
55	GO:0004659: prenyltransferase activity	1.35E-03
56	GO:0051011: microtubule minus-end binding	1.72E-03
57	GO:0004356: glutamate-ammonia ligase activity	1.72E-03
58	GO:0003989: acetyl-CoA carboxylase activity	1.72E-03
59	GO:0048038: quinone binding	1.89E-03
60	GO:0004130: cytochrome-c peroxidase activity	2.12E-03
61	GO:0016688: L-ascorbate peroxidase activity	2.12E-03
62	GO:0042578: phosphoric ester hydrolase activity	2.12E-03
63	GO:0008200: ion channel inhibitor activity	2.12E-03
64	GO:0008237: metallopeptidase activity	2.42E-03
65	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.54E-03
66	GO:0009881: photoreceptor activity	3.00E-03
67	GO:0019899: enzyme binding	3.00E-03
68	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.97E-03
69	GO:0003843: 1,3-beta-D-glucan synthase activity	3.97E-03
70	GO:0042802: identical protein binding	4.56E-03
71	GO:0047617: acyl-CoA hydrolase activity	5.04E-03
72	GO:0008047: enzyme activator activity	5.61E-03
73	GO:0004601: peroxidase activity	5.85E-03
74	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.20E-03
75	GO:0044183: protein binding involved in protein folding	6.20E-03
76	GO:0043621: protein self-association	6.22E-03
77	GO:0005198: structural molecule activity	6.46E-03
78	GO:0004521: endoribonuclease activity	6.81E-03
79	GO:0004565: beta-galactosidase activity	7.44E-03
80	GO:0004089: carbonate dehydratase activity	7.44E-03
81	GO:0031072: heat shock protein binding	7.44E-03
82	GO:0043424: protein histidine kinase binding	1.09E-02
83	GO:0015079: potassium ion transmembrane transporter activity	1.09E-02
84	GO:0051082: unfolded protein binding	1.11E-02
85	GO:0004176: ATP-dependent peptidase activity	1.17E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.32E-02
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.42E-02
88	GO:0005102: receptor binding	1.48E-02
89	GO:0047134: protein-disulfide reductase activity	1.48E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.48E-02
91	GO:0005509: calcium ion binding	1.69E-02
92	GO:0050662: coenzyme binding	1.74E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	1.74E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.11E-02
95	GO:0016759: cellulose synthase activity	2.20E-02
96	GO:0003743: translation initiation factor activity	2.24E-02
97	GO:0008483: transaminase activity	2.30E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.30E-02
99	GO:0005200: structural constituent of cytoskeleton	2.30E-02
100	GO:0016413: O-acetyltransferase activity	2.40E-02
101	GO:0016168: chlorophyll binding	2.60E-02
102	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.91E-02
103	GO:0008236: serine-type peptidase activity	2.91E-02
104	GO:0005096: GTPase activator activity	3.12E-02
105	GO:0003746: translation elongation factor activity	3.57E-02
106	GO:0050661: NADP binding	3.92E-02
107	GO:0035091: phosphatidylinositol binding	4.52E-02
108	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02
109	GO:0051287: NAD binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	3.13E-54
4	GO:0009941: chloroplast envelope	1.04E-39
5	GO:0009535: chloroplast thylakoid membrane	9.14E-33
6	GO:0009570: chloroplast stroma	1.37E-31
7	GO:0009579: thylakoid	1.27E-21
8	GO:0009543: chloroplast thylakoid lumen	1.25E-13
9	GO:0009534: chloroplast thylakoid	3.80E-12
10	GO:0031977: thylakoid lumen	3.37E-09
11	GO:0048046: apoplast	4.86E-08
12	GO:0005840: ribosome	2.34E-07
13	GO:0010319: stromule	4.09E-07
14	GO:0009654: photosystem II oxygen evolving complex	1.29E-06
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.55E-06
16	GO:0005960: glycine cleavage complex	1.53E-05
17	GO:0030095: chloroplast photosystem II	2.52E-05
18	GO:0042651: thylakoid membrane	5.05E-05
19	GO:0009532: plastid stroma	5.87E-05
20	GO:0019898: extrinsic component of membrane	1.53E-04
21	GO:0009706: chloroplast inner membrane	2.40E-04
22	GO:0031969: chloroplast membrane	2.85E-04
23	GO:0010287: plastoglobule	3.17E-04
24	GO:0022626: cytosolic ribosome	3.34E-04
25	GO:0042170: plastid membrane	4.38E-04
26	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.38E-04
27	GO:0000311: plastid large ribosomal subunit	4.48E-04
28	GO:0009536: plastid	6.32E-04
29	GO:0009528: plastid inner membrane	7.14E-04
30	GO:0005719: nuclear euchromatin	1.02E-03
31	GO:0009527: plastid outer membrane	1.35E-03
32	GO:0005874: microtubule	1.45E-03
33	GO:0055035: plastid thylakoid membrane	1.72E-03
34	GO:0009533: chloroplast stromal thylakoid	3.00E-03
35	GO:0009539: photosystem II reaction center	3.97E-03
36	GO:0000148: 1,3-beta-D-glucan synthase complex	3.97E-03
37	GO:0005811: lipid particle	3.97E-03
38	GO:0015934: large ribosomal subunit	4.08E-03
39	GO:0045298: tubulin complex	4.49E-03
40	GO:0005763: mitochondrial small ribosomal subunit	4.49E-03
41	GO:0005876: spindle microtubule	5.04E-03
42	GO:0015030: Cajal body	5.04E-03
43	GO:0016324: apical plasma membrane	5.61E-03
44	GO:0016020: membrane	7.36E-03
45	GO:0009574: preprophase band	7.44E-03
46	GO:0009505: plant-type cell wall	8.12E-03
47	GO:0005875: microtubule associated complex	9.46E-03
48	GO:0009524: phragmoplast	1.46E-02
49	GO:0005871: kinesin complex	1.48E-02
50	GO:0009523: photosystem II	1.83E-02
51	GO:0005778: peroxisomal membrane	2.30E-02
52	GO:0030529: intracellular ribonucleoprotein complex	2.50E-02
53	GO:0046658: anchored component of plasma membrane	2.54E-02
54	GO:0009707: chloroplast outer membrane	3.02E-02
55	GO:0005819: spindle	3.80E-02