co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0043462: regulation of ATPase activity	0.00E+00
3	GO:0006042: glucosamine biosynthetic process	0.00E+00
4	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
5	GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response	0.00E+00
6	GO:0071731: response to nitric oxide	0.00E+00
7	GO:0006457: protein folding	2.22E-15
8	GO:0046686: response to cadmium ion	2.99E-10
9	GO:0009408: response to heat	1.16E-08
10	GO:0045041: protein import into mitochondrial intermembrane space	4.01E-07
11	GO:0009651: response to salt stress	2.17E-06
12	GO:0051131: chaperone-mediated protein complex assembly	3.65E-06
13	GO:0034976: response to endoplasmic reticulum stress	5.70E-06
14	GO:0061077: chaperone-mediated protein folding	9.63E-06
15	GO:0006458: 'de novo' protein folding	2.53E-05
16	GO:0042026: protein refolding	2.53E-05
17	GO:0006189: 'de novo' IMP biosynthetic process	7.10E-05
18	GO:0080093: regulation of photorespiration	8.61E-05
19	GO:0031998: regulation of fatty acid beta-oxidation	8.61E-05
20	GO:0000494: box C/D snoRNA 3'-end processing	8.61E-05
21	GO:1990258: histone glutamine methylation	8.61E-05
22	GO:0090332: stomatal closure	8.63E-05
23	GO:0000027: ribosomal large subunit assembly	2.63E-04
24	GO:0010187: negative regulation of seed germination	2.63E-04
25	GO:0006334: nucleosome assembly	3.20E-04
26	GO:0006954: inflammatory response	3.42E-04
27	GO:1902626: assembly of large subunit precursor of preribosome	3.42E-04
28	GO:0002181: cytoplasmic translation	3.42E-04
29	GO:0006412: translation	3.42E-04
30	GO:0055074: calcium ion homeostasis	3.42E-04
31	GO:0007005: mitochondrion organization	3.51E-04
32	GO:0051289: protein homotetramerization	4.92E-04
33	GO:0006986: response to unfolded protein	4.92E-04
34	GO:0070301: cellular response to hydrogen peroxide	4.92E-04
35	GO:0051085: chaperone mediated protein folding requiring cofactor	4.92E-04
36	GO:0006241: CTP biosynthetic process	4.92E-04
37	GO:0006165: nucleoside diphosphate phosphorylation	4.92E-04
38	GO:0006228: UTP biosynthetic process	4.92E-04
39	GO:0006164: purine nucleotide biosynthetic process	4.92E-04
40	GO:0042823: pyridoxal phosphate biosynthetic process	4.92E-04
41	GO:0010188: response to microbial phytotoxin	6.55E-04
42	GO:0006183: GTP biosynthetic process	6.55E-04
43	GO:0033356: UDP-L-arabinose metabolic process	6.55E-04
44	GO:0000956: nuclear-transcribed mRNA catabolic process	6.55E-04
45	GO:0006097: glyoxylate cycle	8.29E-04
46	GO:0031167: rRNA methylation	8.29E-04
47	GO:0009615: response to virus	9.13E-04
48	GO:0009816: defense response to bacterium, incompatible interaction	9.62E-04
49	GO:0016444: somatic cell DNA recombination	1.20E-03
50	GO:0009955: adaxial/abaxial pattern specification	1.20E-03
51	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.20E-03
52	GO:0042372: phylloquinone biosynthetic process	1.20E-03
53	GO:0071669: plant-type cell wall organization or biogenesis	1.41E-03
54	GO:0042254: ribosome biogenesis	1.44E-03
55	GO:0000028: ribosomal small subunit assembly	1.63E-03
56	GO:0050821: protein stabilization	1.63E-03
57	GO:0030968: endoplasmic reticulum unfolded protein response	1.86E-03
58	GO:0001510: RNA methylation	1.86E-03
59	GO:0010200: response to chitin	1.92E-03
60	GO:0015780: nucleotide-sugar transport	2.10E-03
61	GO:0098656: anion transmembrane transport	2.10E-03
62	GO:0045454: cell redox homeostasis	2.31E-03
63	GO:0006364: rRNA processing	2.54E-03
64	GO:0010162: seed dormancy process	2.61E-03
65	GO:0051555: flavonol biosynthetic process	2.61E-03
66	GO:0009299: mRNA transcription	2.61E-03
67	GO:0006820: anion transport	3.15E-03
68	GO:0009414: response to water deprivation	3.31E-03
69	GO:0006108: malate metabolic process	3.43E-03
70	GO:0010075: regulation of meristem growth	3.43E-03
71	GO:0009553: embryo sac development	3.49E-03
72	GO:0009934: regulation of meristem structural organization	3.73E-03
73	GO:0048467: gynoecium development	3.73E-03
74	GO:0006541: glutamine metabolic process	3.73E-03
75	GO:0009944: polarity specification of adaxial/abaxial axis	4.65E-03
76	GO:0015992: proton transport	5.32E-03
77	GO:0098542: defense response to other organism	5.32E-03
78	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
79	GO:0009814: defense response, incompatible interaction	5.66E-03
80	GO:0009294: DNA mediated transformation	6.01E-03
81	GO:0001944: vasculature development	6.01E-03
82	GO:0009555: pollen development	6.22E-03
83	GO:0009306: protein secretion	6.36E-03
84	GO:0070417: cellular response to cold	6.73E-03
85	GO:0008033: tRNA processing	7.10E-03
86	GO:0034220: ion transmembrane transport	7.10E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	7.10E-03
88	GO:0010118: stomatal movement	7.10E-03
89	GO:0009617: response to bacterium	7.37E-03
90	GO:0006662: glycerol ether metabolic process	7.48E-03
91	GO:0010197: polar nucleus fusion	7.48E-03
92	GO:0048868: pollen tube development	7.48E-03
93	GO:0010193: response to ozone	8.66E-03
94	GO:0009567: double fertilization forming a zygote and endosperm	9.91E-03
95	GO:0010286: heat acclimation	1.03E-02
96	GO:0009911: positive regulation of flower development	1.12E-02
97	GO:0048573: photoperiodism, flowering	1.26E-02
98	GO:0016049: cell growth	1.31E-02
99	GO:0030244: cellulose biosynthetic process	1.35E-02
100	GO:0009832: plant-type cell wall biogenesis	1.40E-02
101	GO:0010311: lateral root formation	1.40E-02
102	GO:0048527: lateral root development	1.50E-02
103	GO:0042742: defense response to bacterium	1.52E-02
104	GO:0000724: double-strand break repair via homologous recombination	1.55E-02
105	GO:0009853: photorespiration	1.60E-02
106	GO:0034599: cellular response to oxidative stress	1.65E-02
107	GO:0006099: tricarboxylic acid cycle	1.65E-02
108	GO:0006839: mitochondrial transport	1.76E-02
109	GO:0050832: defense response to fungus	1.78E-02
110	GO:0048364: root development	1.83E-02
111	GO:0042542: response to hydrogen peroxide	1.86E-02
112	GO:0051707: response to other organism	1.92E-02
113	GO:0008283: cell proliferation	1.92E-02
114	GO:0006855: drug transmembrane transport	2.14E-02
115	GO:0031347: regulation of defense response	2.19E-02
116	GO:0006486: protein glycosylation	2.37E-02
117	GO:0051603: proteolysis involved in cellular protein catabolic process	2.43E-02
118	GO:0009735: response to cytokinin	2.85E-02
119	GO:0016569: covalent chromatin modification	2.92E-02
120	GO:0009624: response to nematode	3.04E-02
121	GO:0000398: mRNA splicing, via spliceosome	3.37E-02
122	GO:0051301: cell division	3.40E-02
123	GO:0045893: positive regulation of transcription, DNA-templated	3.58E-02
124	GO:0006413: translational initiation	4.27E-02
125	GO:0009793: embryo development ending in seed dormancy	4.34E-02
126	GO:0006952: defense response	4.44E-02
127	GO:0010150: leaf senescence	4.49E-02
128	GO:0009451: RNA modification	4.56E-02
129	GO:0006414: translational elongation	4.63E-02
130	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
2	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
3	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
4	GO:0051082: unfolded protein binding	4.21E-15
5	GO:0003735: structural constituent of ribosome	2.24E-06
6	GO:1990259: histone-glutamine methyltransferase activity	8.61E-05
7	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	8.61E-05
8	GO:0097367: carbohydrate derivative binding	8.61E-05
9	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	8.61E-05
10	GO:0003746: translation elongation factor activity	1.20E-04
11	GO:0044183: protein binding involved in protein folding	1.22E-04
12	GO:0031072: heat shock protein binding	1.63E-04
13	GO:0005524: ATP binding	1.73E-04
14	GO:0008517: folic acid transporter activity	2.04E-04
15	GO:0052691: UDP-arabinopyranose mutase activity	2.04E-04
16	GO:0008649: rRNA methyltransferase activity	3.42E-04
17	GO:0070180: large ribosomal subunit rRNA binding	3.42E-04
18	GO:0000030: mannosyltransferase activity	3.42E-04
19	GO:0005507: copper ion binding	4.00E-04
20	GO:0003756: protein disulfide isomerase activity	4.16E-04
21	GO:0005460: UDP-glucose transmembrane transporter activity	4.92E-04
22	GO:0004550: nucleoside diphosphate kinase activity	4.92E-04
23	GO:0016866: intramolecular transferase activity	6.55E-04
24	GO:0002020: protease binding	8.29E-04
25	GO:0005459: UDP-galactose transmembrane transporter activity	8.29E-04
26	GO:0003723: RNA binding	9.20E-04
27	GO:0016462: pyrophosphatase activity	1.01E-03
28	GO:0016615: malate dehydrogenase activity	1.01E-03
29	GO:0030060: L-malate dehydrogenase activity	1.20E-03
30	GO:0030515: snoRNA binding	1.41E-03
31	GO:0015288: porin activity	1.63E-03
32	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.63E-03
33	GO:0042393: histone binding	1.68E-03
34	GO:0008308: voltage-gated anion channel activity	1.86E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.20E-03
36	GO:0047617: acyl-CoA hydrolase activity	2.35E-03
37	GO:0008559: xenobiotic-transporting ATPase activity	2.87E-03
38	GO:0005509: calcium ion binding	3.04E-03
39	GO:0015114: phosphate ion transmembrane transporter activity	3.43E-03
40	GO:0019843: rRNA binding	4.49E-03
41	GO:0004407: histone deacetylase activity	4.65E-03
42	GO:0005528: FK506 binding	4.65E-03
43	GO:0051087: chaperone binding	4.98E-03
44	GO:0016887: ATPase activity	5.24E-03
45	GO:0004298: threonine-type endopeptidase activity	5.32E-03
46	GO:0035251: UDP-glucosyltransferase activity	5.32E-03
47	GO:0016760: cellulose synthase (UDP-forming) activity	6.01E-03
48	GO:0047134: protein-disulfide reductase activity	6.73E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	7.87E-03
50	GO:0016853: isomerase activity	7.87E-03
51	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.48E-03
52	GO:0008483: transaminase activity	1.03E-02
53	GO:0015250: water channel activity	1.12E-02
54	GO:0008233: peptidase activity	1.17E-02
55	GO:0050897: cobalt ion binding	1.50E-02
56	GO:0003924: GTPase activity	1.76E-02
57	GO:0043621: protein self-association	2.02E-02
58	GO:0003729: mRNA binding	2.51E-02
59	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.85E-02
60	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.85E-02
61	GO:0015035: protein disulfide oxidoreductase activity	3.11E-02
62	GO:0016758: transferase activity, transferring hexosyl groups	3.50E-02
63	GO:0016787: hydrolase activity	3.95E-02
64	GO:0030246: carbohydrate binding	4.19E-02
65	GO:0008194: UDP-glycosyltransferase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005774: vacuolar membrane	7.97E-13
2	GO:0005730: nucleolus	4.77E-10
3	GO:0009506: plasmodesma	9.03E-08
4	GO:0005773: vacuole	2.52E-07
5	GO:0005829: cytosol	3.28E-07
6	GO:0005788: endoplasmic reticulum lumen	1.77E-06
7	GO:0005739: mitochondrion	4.50E-06
8	GO:0005783: endoplasmic reticulum	7.41E-06
9	GO:0022625: cytosolic large ribosomal subunit	2.90E-05
10	GO:0005618: cell wall	3.09E-05
11	GO:0005759: mitochondrial matrix	7.36E-05
12	GO:0000138: Golgi trans cisterna	8.61E-05
13	GO:0031351: integral component of plastid membrane	8.61E-05
14	GO:0022626: cytosolic ribosome	1.88E-04
15	GO:1990726: Lsm1-7-Pat1 complex	4.92E-04
16	GO:0005886: plasma membrane	6.64E-04
17	GO:0005840: ribosome	8.13E-04
18	GO:0009507: chloroplast	8.36E-04
19	GO:0031428: box C/D snoRNP complex	1.01E-03
20	GO:0005762: mitochondrial large ribosomal subunit	1.20E-03
21	GO:0015934: large ribosomal subunit	1.35E-03
22	GO:0005777: peroxisome	1.45E-03
23	GO:0005688: U6 snRNP	1.63E-03
24	GO:0046930: pore complex	1.86E-03
25	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.86E-03
26	GO:0005742: mitochondrial outer membrane translocase complex	1.86E-03
27	GO:0048046: apoplast	2.01E-03
28	GO:0005763: mitochondrial small ribosomal subunit	2.10E-03
29	GO:0015030: Cajal body	2.35E-03
30	GO:0005852: eukaryotic translation initiation factor 3 complex	2.87E-03
31	GO:0005747: mitochondrial respiratory chain complex I	3.09E-03
32	GO:0032040: small-subunit processome	3.15E-03
33	GO:0030176: integral component of endoplasmic reticulum membrane	4.03E-03
34	GO:0005795: Golgi stack	4.03E-03
35	GO:0005737: cytoplasm	4.29E-03
36	GO:0045271: respiratory chain complex I	4.98E-03
37	GO:0005741: mitochondrial outer membrane	5.32E-03
38	GO:0005839: proteasome core complex	5.32E-03
39	GO:0005794: Golgi apparatus	6.59E-03
40	GO:0016020: membrane	7.25E-03
41	GO:0016592: mediator complex	9.07E-03
42	GO:0005643: nuclear pore	1.35E-02
43	GO:0000325: plant-type vacuole	1.50E-02
44	GO:0043231: intracellular membrane-bounded organelle	1.94E-02
45	GO:0009505: plant-type cell wall	2.03E-02
46	GO:0031966: mitochondrial membrane	2.25E-02
47	GO:0000502: proteasome complex	2.37E-02
48	GO:0005789: endoplasmic reticulum membrane	2.60E-02
49	GO:0005681: spliceosomal complex	2.67E-02
50	GO:0005732: small nucleolar ribonucleoprotein complex	3.24E-02
51	GO:0009941: chloroplast envelope	3.50E-02