co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G27160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0006223: uracil salvage	0.00E+00
9	GO:0033494: ferulate metabolic process	0.00E+00
10	GO:0016553: base conversion or substitution editing	0.00E+00
11	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
12	GO:0006412: translation	5.50E-21
13	GO:0032544: plastid translation	1.68E-14
14	GO:0042254: ribosome biogenesis	7.81E-12
15	GO:0015979: photosynthesis	5.45E-11
16	GO:0009735: response to cytokinin	4.73E-08
17	GO:0010207: photosystem II assembly	1.48E-06
18	GO:0046620: regulation of organ growth	6.61E-06
19	GO:0010027: thylakoid membrane organization	4.74E-05
20	GO:0032543: mitochondrial translation	8.25E-05
21	GO:0010236: plastoquinone biosynthetic process	8.25E-05
22	GO:0009411: response to UV	1.63E-04
23	GO:0017148: negative regulation of translation	1.64E-04
24	GO:0042372: phylloquinone biosynthetic process	1.64E-04
25	GO:0009772: photosynthetic electron transport in photosystem II	2.16E-04
26	GO:0046520: sphingoid biosynthetic process	2.80E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.80E-04
28	GO:0010442: guard cell morphogenesis	2.80E-04
29	GO:0000481: maturation of 5S rRNA	2.80E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.80E-04
31	GO:0042759: long-chain fatty acid biosynthetic process	2.80E-04
32	GO:0046167: glycerol-3-phosphate biosynthetic process	2.80E-04
33	GO:1902458: positive regulation of stomatal opening	2.80E-04
34	GO:0034337: RNA folding	2.80E-04
35	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.80E-04
36	GO:0043489: RNA stabilization	2.80E-04
37	GO:0010206: photosystem II repair	4.05E-04
38	GO:0009658: chloroplast organization	5.00E-04
39	GO:0048829: root cap development	5.60E-04
40	GO:0006949: syncytium formation	5.60E-04
41	GO:0006650: glycerophospholipid metabolic process	6.14E-04
42	GO:0001736: establishment of planar polarity	6.14E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	6.14E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.14E-04
45	GO:0010024: phytochromobilin biosynthetic process	6.14E-04
46	GO:0052541: plant-type cell wall cellulose metabolic process	6.14E-04
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.14E-04
48	GO:0009734: auxin-activated signaling pathway	6.64E-04
49	GO:0015995: chlorophyll biosynthetic process	6.76E-04
50	GO:0009409: response to cold	7.77E-04
51	GO:0006006: glucose metabolic process	8.37E-04
52	GO:0010143: cutin biosynthetic process	9.39E-04
53	GO:0006788: heme oxidation	9.96E-04
54	GO:0015840: urea transport	9.96E-04
55	GO:0071492: cellular response to UV-A	9.96E-04
56	GO:2001295: malonyl-CoA biosynthetic process	9.96E-04
57	GO:0046168: glycerol-3-phosphate catabolic process	9.96E-04
58	GO:0090391: granum assembly	9.96E-04
59	GO:0006518: peptide metabolic process	9.96E-04
60	GO:0006833: water transport	1.16E-03
61	GO:1901332: negative regulation of lateral root development	1.42E-03
62	GO:0006228: UTP biosynthetic process	1.42E-03
63	GO:0006986: response to unfolded protein	1.42E-03
64	GO:0055070: copper ion homeostasis	1.42E-03
65	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.42E-03
66	GO:0009926: auxin polar transport	1.42E-03
67	GO:0071484: cellular response to light intensity	1.42E-03
68	GO:0051085: chaperone mediated protein folding requiring cofactor	1.42E-03
69	GO:0051639: actin filament network formation	1.42E-03
70	GO:0006241: CTP biosynthetic process	1.42E-03
71	GO:0009650: UV protection	1.42E-03
72	GO:0006072: glycerol-3-phosphate metabolic process	1.42E-03
73	GO:0006424: glutamyl-tRNA aminoacylation	1.42E-03
74	GO:0006165: nucleoside diphosphate phosphorylation	1.42E-03
75	GO:0003333: amino acid transmembrane transport	1.56E-03
76	GO:0009733: response to auxin	1.64E-03
77	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.86E-03
78	GO:0044206: UMP salvage	1.91E-03
79	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.91E-03
80	GO:0010037: response to carbon dioxide	1.91E-03
81	GO:0006808: regulation of nitrogen utilization	1.91E-03
82	GO:0015976: carbon utilization	1.91E-03
83	GO:0071486: cellular response to high light intensity	1.91E-03
84	GO:0051764: actin crosslink formation	1.91E-03
85	GO:0006183: GTP biosynthetic process	1.91E-03
86	GO:2000122: negative regulation of stomatal complex development	1.91E-03
87	GO:0022622: root system development	1.91E-03
88	GO:0000413: protein peptidyl-prolyl isomerization	2.36E-03
89	GO:0048359: mucilage metabolic process involved in seed coat development	2.43E-03
90	GO:0043097: pyrimidine nucleoside salvage	2.43E-03
91	GO:0045038: protein import into chloroplast thylakoid membrane	2.43E-03
92	GO:0031365: N-terminal protein amino acid modification	2.43E-03
93	GO:0009958: positive gravitropism	2.54E-03
94	GO:0006206: pyrimidine nucleobase metabolic process	3.00E-03
95	GO:0032973: amino acid export	3.00E-03
96	GO:0042549: photosystem II stabilization	3.00E-03
97	GO:1901259: chloroplast rRNA processing	3.62E-03
98	GO:0010189: vitamin E biosynthetic process	3.62E-03
99	GO:0009854: oxidative photosynthetic carbon pathway	3.62E-03
100	GO:0009955: adaxial/abaxial pattern specification	3.62E-03
101	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.62E-03
102	GO:0009828: plant-type cell wall loosening	3.80E-03
103	GO:0042742: defense response to bacterium	4.23E-03
104	GO:0032880: regulation of protein localization	4.26E-03
105	GO:0009610: response to symbiotic fungus	4.26E-03
106	GO:0043090: amino acid import	4.26E-03
107	GO:0010196: nonphotochemical quenching	4.26E-03
108	GO:0006605: protein targeting	4.95E-03
109	GO:0032508: DNA duplex unwinding	4.95E-03
110	GO:2000070: regulation of response to water deprivation	4.95E-03
111	GO:0048564: photosystem I assembly	4.95E-03
112	GO:0008610: lipid biosynthetic process	4.95E-03
113	GO:0009932: cell tip growth	5.67E-03
114	GO:0015996: chlorophyll catabolic process	5.67E-03
115	GO:0007186: G-protein coupled receptor signaling pathway	5.67E-03
116	GO:0006633: fatty acid biosynthetic process	5.76E-03
117	GO:0009817: defense response to fungus, incompatible interaction	5.91E-03
118	GO:0010311: lateral root formation	6.21E-03
119	GO:0015780: nucleotide-sugar transport	6.43E-03
120	GO:0009051: pentose-phosphate shunt, oxidative branch	6.43E-03
121	GO:0080144: amino acid homeostasis	6.43E-03
122	GO:0045490: pectin catabolic process	6.50E-03
123	GO:0006865: amino acid transport	7.16E-03
124	GO:0010205: photoinhibition	7.22E-03
125	GO:0043069: negative regulation of programmed cell death	8.04E-03
126	GO:0018119: peptidyl-cysteine S-nitrosylation	8.90E-03
127	GO:0048765: root hair cell differentiation	8.90E-03
128	GO:0010015: root morphogenesis	8.90E-03
129	GO:0009773: photosynthetic electron transport in photosystem I	8.90E-03
130	GO:0043085: positive regulation of catalytic activity	8.90E-03
131	GO:0006631: fatty acid metabolic process	8.91E-03
132	GO:0045037: protein import into chloroplast stroma	9.79E-03
133	GO:0016024: CDP-diacylglycerol biosynthetic process	9.79E-03
134	GO:2000012: regulation of auxin polar transport	1.07E-02
135	GO:0019253: reductive pentose-phosphate cycle	1.17E-02
136	GO:0009664: plant-type cell wall organization	1.22E-02
137	GO:0046688: response to copper ion	1.26E-02
138	GO:0006636: unsaturated fatty acid biosynthetic process	1.37E-02
139	GO:0006071: glycerol metabolic process	1.37E-02
140	GO:0010025: wax biosynthetic process	1.37E-02
141	GO:0051017: actin filament bundle assembly	1.47E-02
142	GO:0009116: nucleoside metabolic process	1.47E-02
143	GO:0000027: ribosomal large subunit assembly	1.47E-02
144	GO:0010026: trichome differentiation	1.58E-02
145	GO:0061077: chaperone-mediated protein folding	1.68E-02
146	GO:0031408: oxylipin biosynthetic process	1.68E-02
147	GO:0045454: cell redox homeostasis	1.87E-02
148	GO:0009306: protein secretion	2.03E-02
149	GO:0055085: transmembrane transport	2.07E-02
150	GO:0006869: lipid transport	2.10E-02
151	GO:0009793: embryo development ending in seed dormancy	2.14E-02
152	GO:0008284: positive regulation of cell proliferation	2.15E-02
153	GO:0042335: cuticle development	2.27E-02
154	GO:0034220: ion transmembrane transport	2.27E-02
155	GO:0006662: glycerol ether metabolic process	2.39E-02
156	GO:0010182: sugar mediated signaling pathway	2.39E-02
157	GO:0015986: ATP synthesis coupled proton transport	2.52E-02
158	GO:0007018: microtubule-based movement	2.52E-02
159	GO:0055114: oxidation-reduction process	2.56E-02
160	GO:0008654: phospholipid biosynthetic process	2.65E-02
161	GO:0009790: embryo development	2.73E-02
162	GO:0002229: defense response to oomycetes	2.78E-02
163	GO:0032502: developmental process	2.91E-02
164	GO:0009630: gravitropism	2.91E-02
165	GO:0030163: protein catabolic process	3.05E-02
166	GO:0040008: regulation of growth	3.08E-02
167	GO:0009451: RNA modification	3.30E-02
168	GO:0009739: response to gibberellin	3.61E-02
169	GO:0016126: sterol biosynthetic process	3.62E-02
170	GO:0009627: systemic acquired resistance	3.91E-02
171	GO:0010411: xyloglucan metabolic process	4.06E-02
172	GO:0016311: dephosphorylation	4.21E-02
173	GO:0018298: protein-chromophore linkage	4.37E-02
174	GO:0009813: flavonoid biosynthetic process	4.52E-02
175	GO:0009826: unidimensional cell growth	4.78E-02
176	GO:0009631: cold acclimation	4.84E-02
177	GO:0007568: aging	4.84E-02
178	GO:0048527: lateral root development	4.84E-02
179	GO:0010119: regulation of stomatal movement	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
5	GO:0008887: glycerate kinase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0019843: rRNA binding	1.01E-23
10	GO:0003735: structural constituent of ribosome	2.57E-23
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.26E-06
12	GO:0005528: FK506 binding	3.17E-06
13	GO:0016851: magnesium chelatase activity	2.89E-05
14	GO:0043023: ribosomal large subunit binding	2.89E-05
15	GO:0010328: auxin influx transmembrane transporter activity	5.21E-05
16	GO:0051920: peroxiredoxin activity	1.64E-04
17	GO:0016209: antioxidant activity	2.73E-04
18	GO:0015200: methylammonium transmembrane transporter activity	2.80E-04
19	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.80E-04
20	GO:0004163: diphosphomevalonate decarboxylase activity	2.80E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.80E-04
22	GO:0000170: sphingosine hydroxylase activity	2.80E-04
23	GO:0080132: fatty acid alpha-hydroxylase activity	2.80E-04
24	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.80E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.14E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.14E-04
27	GO:0042284: sphingolipid delta-4 desaturase activity	6.14E-04
28	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.14E-04
29	GO:0008266: poly(U) RNA binding	9.39E-04
30	GO:0004075: biotin carboxylase activity	9.96E-04
31	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.96E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.96E-04
33	GO:0005504: fatty acid binding	9.96E-04
34	GO:0017150: tRNA dihydrouridine synthase activity	9.96E-04
35	GO:0050734: hydroxycinnamoyltransferase activity	9.96E-04
36	GO:0004550: nucleoside diphosphate kinase activity	1.42E-03
37	GO:0008097: 5S rRNA binding	1.42E-03
38	GO:0022891: substrate-specific transmembrane transporter activity	1.86E-03
39	GO:0030570: pectate lyase activity	1.86E-03
40	GO:0043495: protein anchor	1.91E-03
41	GO:0004392: heme oxygenase (decyclizing) activity	1.91E-03
42	GO:0015204: urea transmembrane transporter activity	1.91E-03
43	GO:0004659: prenyltransferase activity	1.91E-03
44	GO:0004845: uracil phosphoribosyltransferase activity	1.91E-03
45	GO:0010011: auxin binding	1.91E-03
46	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.91E-03
47	GO:0016836: hydro-lyase activity	1.91E-03
48	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.91E-03
49	GO:0045430: chalcone isomerase activity	1.91E-03
50	GO:0052793: pectin acetylesterase activity	1.91E-03
51	GO:0015171: amino acid transmembrane transporter activity	2.35E-03
52	GO:0004040: amidase activity	2.43E-03
53	GO:0003989: acetyl-CoA carboxylase activity	2.43E-03
54	GO:0016208: AMP binding	3.00E-03
55	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.00E-03
56	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.00E-03
57	GO:0008519: ammonium transmembrane transporter activity	3.00E-03
58	GO:0004017: adenylate kinase activity	3.62E-03
59	GO:0004849: uridine kinase activity	3.62E-03
60	GO:0008235: metalloexopeptidase activity	4.26E-03
61	GO:0019899: enzyme binding	4.26E-03
62	GO:0015250: water channel activity	4.53E-03
63	GO:0016168: chlorophyll binding	4.79E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.67E-03
65	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.43E-03
66	GO:0003993: acid phosphatase activity	7.83E-03
67	GO:0008047: enzyme activator activity	8.04E-03
68	GO:0050661: NADP binding	8.54E-03
69	GO:0004177: aminopeptidase activity	8.90E-03
70	GO:0003723: RNA binding	9.09E-03
71	GO:0004089: carbonate dehydratase activity	1.07E-02
72	GO:0015293: symporter activity	1.09E-02
73	GO:0051287: NAD binding	1.17E-02
74	GO:0008083: growth factor activity	1.17E-02
75	GO:0005509: calcium ion binding	1.18E-02
76	GO:0003777: microtubule motor activity	1.45E-02
77	GO:0051087: chaperone binding	1.58E-02
78	GO:0052689: carboxylic ester hydrolase activity	1.69E-02
79	GO:0008514: organic anion transmembrane transporter activity	2.03E-02
80	GO:0047134: protein-disulfide reductase activity	2.15E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.39E-02
82	GO:0008080: N-acetyltransferase activity	2.39E-02
83	GO:0005507: copper ion binding	2.45E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	2.52E-02
85	GO:0016829: lyase activity	2.53E-02
86	GO:0003729: mRNA binding	2.66E-02
87	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.78E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-02
89	GO:0051015: actin filament binding	3.05E-02
90	GO:0016791: phosphatase activity	3.19E-02
91	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.33E-02
92	GO:0008017: microtubule binding	3.37E-02
93	GO:0008289: lipid binding	3.67E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.06E-02
95	GO:0042802: identical protein binding	4.09E-02
96	GO:0008236: serine-type peptidase activity	4.21E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.21E-02
98	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.37E-02
99	GO:0004222: metalloendopeptidase activity	4.68E-02
100	GO:0004601: peroxidase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009570: chloroplast stroma	1.10E-59
3	GO:0009507: chloroplast	4.98E-53
4	GO:0009941: chloroplast envelope	1.78E-42
5	GO:0009579: thylakoid	8.76E-37
6	GO:0009535: chloroplast thylakoid membrane	1.38E-27
7	GO:0009543: chloroplast thylakoid lumen	1.01E-23
8	GO:0005840: ribosome	4.30E-23
9	GO:0031977: thylakoid lumen	5.10E-22
10	GO:0009534: chloroplast thylakoid	2.21E-15
11	GO:0030095: chloroplast photosystem II	2.28E-08
12	GO:0009654: photosystem II oxygen evolving complex	8.13E-08
13	GO:0019898: extrinsic component of membrane	6.64E-07
14	GO:0010319: stromule	1.61E-06
15	GO:0016020: membrane	7.10E-06
16	GO:0010007: magnesium chelatase complex	1.29E-05
17	GO:0000311: plastid large ribosomal subunit	3.77E-05
18	GO:0015935: small ribosomal subunit	1.26E-04
19	GO:0031969: chloroplast membrane	1.37E-04
20	GO:0009536: plastid	1.67E-04
21	GO:0009515: granal stacked thylakoid	2.80E-04
22	GO:0009547: plastid ribosome	2.80E-04
23	GO:0009523: photosystem II	3.11E-04
24	GO:0009505: plant-type cell wall	6.44E-04
25	GO:0015934: large ribosomal subunit	9.21E-04
26	GO:0000312: plastid small ribosomal subunit	9.39E-04
27	GO:0009528: plastid inner membrane	9.96E-04
28	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.42E-03
29	GO:0032432: actin filament bundle	1.42E-03
30	GO:0009527: plastid outer membrane	1.91E-03
31	GO:0055035: plastid thylakoid membrane	2.43E-03
32	GO:0031225: anchored component of membrane	2.52E-03
33	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.00E-03
34	GO:0048046: apoplast	3.07E-03
35	GO:0009986: cell surface	4.26E-03
36	GO:0009533: chloroplast stromal thylakoid	4.26E-03
37	GO:0042807: central vacuole	4.26E-03
38	GO:0000326: protein storage vacuole	5.67E-03
39	GO:0005763: mitochondrial small ribosomal subunit	6.43E-03
40	GO:0008180: COP9 signalosome	6.43E-03
41	GO:0005884: actin filament	8.90E-03
42	GO:0046658: anchored component of plasma membrane	9.29E-03
43	GO:0032040: small-subunit processome	9.79E-03
44	GO:0005874: microtubule	1.43E-02
45	GO:0042651: thylakoid membrane	1.58E-02
46	GO:0022625: cytosolic large ribosomal subunit	1.59E-02
47	GO:0009532: plastid stroma	1.68E-02
48	GO:0005871: kinesin complex	2.15E-02
49	GO:0010287: plastoglobule	2.21E-02
50	GO:0005618: cell wall	2.44E-02
51	GO:0005778: peroxisomal membrane	3.33E-02
52	GO:0009295: nucleoid	3.33E-02
53	GO:0030529: intracellular ribonucleoprotein complex	3.62E-02
54	GO:0022627: cytosolic small ribosomal subunit	4.26E-02
55	GO:0019005: SCF ubiquitin ligase complex	4.37E-02
56	GO:0009707: chloroplast outer membrane	4.37E-02
57	GO:0022626: cytosolic ribosome	4.69E-02