Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0042407: cristae formation0.00E+00
4GO:0015805: S-adenosyl-L-methionine transport0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0006223: uracil salvage0.00E+00
13GO:0032544: plastid translation6.03E-08
14GO:0015979: photosynthesis6.89E-08
15GO:0006546: glycine catabolic process2.16E-07
16GO:0010236: plastoquinone biosynthetic process6.05E-05
17GO:0010190: cytochrome b6f complex assembly8.88E-05
18GO:1904966: positive regulation of vitamin E biosynthetic process2.32E-04
19GO:1904964: positive regulation of phytol biosynthetic process2.32E-04
20GO:0046167: glycerol-3-phosphate biosynthetic process2.32E-04
21GO:1902458: positive regulation of stomatal opening2.32E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.32E-04
23GO:0009657: plastid organization2.55E-04
24GO:0071482: cellular response to light stimulus2.55E-04
25GO:0006096: glycolytic process2.64E-04
26GO:0043085: positive regulation of catalytic activity4.97E-04
27GO:0006352: DNA-templated transcription, initiation4.97E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process5.15E-04
29GO:0006423: cysteinyl-tRNA aminoacylation5.15E-04
30GO:0006650: glycerophospholipid metabolic process5.15E-04
31GO:0006729: tetrahydrobiopterin biosynthetic process5.15E-04
32GO:1903426: regulation of reactive oxygen species biosynthetic process5.15E-04
33GO:0009767: photosynthetic electron transport chain6.45E-04
34GO:0006633: fatty acid biosynthetic process7.19E-04
35GO:0010207: photosystem II assembly7.26E-04
36GO:0010020: chloroplast fission7.26E-04
37GO:0019253: reductive pentose-phosphate cycle7.26E-04
38GO:0046168: glycerol-3-phosphate catabolic process8.37E-04
39GO:0010581: regulation of starch biosynthetic process8.37E-04
40GO:0006518: peptide metabolic process8.37E-04
41GO:0071492: cellular response to UV-A8.37E-04
42GO:0006696: ergosterol biosynthetic process8.37E-04
43GO:2001295: malonyl-CoA biosynthetic process8.37E-04
44GO:0010731: protein glutathionylation1.19E-03
45GO:0006424: glutamyl-tRNA aminoacylation1.19E-03
46GO:0016556: mRNA modification1.19E-03
47GO:0055070: copper ion homeostasis1.19E-03
48GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.19E-03
49GO:2001141: regulation of RNA biosynthetic process1.19E-03
50GO:0051085: chaperone mediated protein folding requiring cofactor1.19E-03
51GO:0009052: pentose-phosphate shunt, non-oxidative branch1.19E-03
52GO:0006072: glycerol-3-phosphate metabolic process1.19E-03
53GO:0006412: translation1.42E-03
54GO:0044206: UMP salvage1.59E-03
55GO:0071483: cellular response to blue light1.59E-03
56GO:0010037: response to carbon dioxide1.59E-03
57GO:0006808: regulation of nitrogen utilization1.59E-03
58GO:0015976: carbon utilization1.59E-03
59GO:0071486: cellular response to high light intensity1.59E-03
60GO:0019464: glycine decarboxylation via glycine cleavage system1.59E-03
61GO:2000122: negative regulation of stomatal complex development1.59E-03
62GO:0009658: chloroplast organization1.60E-03
63GO:0006810: transport1.61E-03
64GO:0016117: carotenoid biosynthetic process1.67E-03
65GO:0042335: cuticle development1.81E-03
66GO:0032543: mitochondrial translation2.03E-03
67GO:0043097: pyrimidine nucleoside salvage2.03E-03
68GO:0045038: protein import into chloroplast thylakoid membrane2.03E-03
69GO:0031365: N-terminal protein amino acid modification2.03E-03
70GO:0035434: copper ion transmembrane transport2.03E-03
71GO:0006461: protein complex assembly2.03E-03
72GO:0009107: lipoate biosynthetic process2.03E-03
73GO:0000304: response to singlet oxygen2.03E-03
74GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.50E-03
75GO:0006206: pyrimidine nucleobase metabolic process2.50E-03
76GO:0032973: amino acid export2.50E-03
77GO:0042549: photosystem II stabilization2.50E-03
78GO:0006555: methionine metabolic process2.50E-03
79GO:0016554: cytidine to uridine editing2.50E-03
80GO:0045454: cell redox homeostasis2.91E-03
81GO:0042372: phylloquinone biosynthetic process3.00E-03
82GO:0042026: protein refolding3.00E-03
83GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.00E-03
84GO:1901259: chloroplast rRNA processing3.00E-03
85GO:0010189: vitamin E biosynthetic process3.00E-03
86GO:0009854: oxidative photosynthetic carbon pathway3.00E-03
87GO:0009955: adaxial/abaxial pattern specification3.00E-03
88GO:0010027: thylakoid membrane organization3.46E-03
89GO:0010196: nonphotochemical quenching3.54E-03
90GO:0006400: tRNA modification3.54E-03
91GO:0043090: amino acid import3.54E-03
92GO:0030497: fatty acid elongation3.54E-03
93GO:2000070: regulation of response to water deprivation4.10E-03
94GO:0018298: protein-chromophore linkage4.50E-03
95GO:0008152: metabolic process4.65E-03
96GO:0007186: G-protein coupled receptor signaling pathway4.70E-03
97GO:0015996: chlorophyll catabolic process4.70E-03
98GO:0019430: removal of superoxide radicals4.70E-03
99GO:0055114: oxidation-reduction process5.20E-03
100GO:0010206: photosystem II repair5.32E-03
101GO:0080144: amino acid homeostasis5.32E-03
102GO:0009051: pentose-phosphate shunt, oxidative branch5.32E-03
103GO:0006098: pentose-phosphate shunt5.32E-03
104GO:0009637: response to blue light5.71E-03
105GO:0046686: response to cadmium ion5.89E-03
106GO:1900865: chloroplast RNA modification5.97E-03
107GO:0010380: regulation of chlorophyll biosynthetic process5.97E-03
108GO:0043067: regulation of programmed cell death5.97E-03
109GO:0035999: tetrahydrofolate interconversion5.97E-03
110GO:0006839: mitochondrial transport6.50E-03
111GO:0006535: cysteine biosynthetic process from serine6.65E-03
112GO:0048829: root cap development6.65E-03
113GO:0045036: protein targeting to chloroplast6.65E-03
114GO:0009773: photosynthetic electron transport in photosystem I7.35E-03
115GO:0009089: lysine biosynthetic process via diaminopimelate7.35E-03
116GO:0009073: aromatic amino acid family biosynthetic process7.35E-03
117GO:0006415: translational termination7.35E-03
118GO:0018119: peptidyl-cysteine S-nitrosylation7.35E-03
119GO:0000038: very long-chain fatty acid metabolic process7.35E-03
120GO:0019684: photosynthesis, light reaction7.35E-03
121GO:0010114: response to red light7.36E-03
122GO:0045037: protein import into chloroplast stroma8.08E-03
123GO:0006790: sulfur compound metabolic process8.08E-03
124GO:0009636: response to toxic substance8.27E-03
125GO:0009735: response to cytokinin8.37E-03
126GO:0006006: glucose metabolic process8.84E-03
127GO:0006094: gluconeogenesis8.84E-03
128GO:0090351: seedling development1.04E-02
129GO:0046854: phosphatidylinositol phosphorylation1.04E-02
130GO:0010025: wax biosynthetic process1.13E-02
131GO:0019344: cysteine biosynthetic process1.21E-02
132GO:0009116: nucleoside metabolic process1.21E-02
133GO:0009768: photosynthesis, light harvesting in photosystem I1.30E-02
134GO:0016575: histone deacetylation1.30E-02
135GO:0006418: tRNA aminoacylation for protein translation1.30E-02
136GO:0031408: oxylipin biosynthetic process1.39E-02
137GO:0003333: amino acid transmembrane transport1.39E-02
138GO:0061077: chaperone-mediated protein folding1.39E-02
139GO:0009409: response to cold1.42E-02
140GO:0006457: protein folding1.42E-02
141GO:0006730: one-carbon metabolic process1.48E-02
142GO:0007005: mitochondrion organization1.48E-02
143GO:0006662: glycerol ether metabolic process1.97E-02
144GO:0010197: polar nucleus fusion1.97E-02
145GO:0010182: sugar mediated signaling pathway1.97E-02
146GO:0048868: pollen tube development1.97E-02
147GO:0007018: microtubule-based movement2.07E-02
148GO:0008654: phospholipid biosynthetic process2.18E-02
149GO:0032502: developmental process2.40E-02
150GO:0001666: response to hypoxia2.98E-02
151GO:0009627: systemic acquired resistance3.22E-02
152GO:0042128: nitrate assimilation3.22E-02
153GO:0015995: chlorophyll biosynthetic process3.34E-02
154GO:0048481: plant ovule development3.59E-02
155GO:0008219: cell death3.59E-02
156GO:0010218: response to far red light3.85E-02
157GO:0009407: toxin catabolic process3.85E-02
158GO:0042254: ribosome biogenesis3.86E-02
159GO:0010119: regulation of stomatal movement3.98E-02
160GO:0006865: amino acid transport4.12E-02
161GO:0009853: photorespiration4.25E-02
162GO:0034599: cellular response to oxidative stress4.39E-02
163GO:0030001: metal ion transport4.67E-02
164GO:0055085: transmembrane transport4.74E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0046905: phytoene synthase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
11GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
14GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
15GO:0019843: rRNA binding4.73E-10
16GO:0001053: plastid sigma factor activity3.78E-05
17GO:0016987: sigma factor activity3.78E-05
18GO:0004033: aldo-keto reductase (NADP) activity2.06E-04
19GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.32E-04
20GO:0051996: squalene synthase activity2.32E-04
21GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.32E-04
22GO:0005080: protein kinase C binding2.32E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.32E-04
24GO:0004560: alpha-L-fucosidase activity2.32E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.32E-04
26GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.83E-04
27GO:0003735: structural constituent of ribosome3.06E-04
28GO:0016168: chlorophyll binding4.18E-04
29GO:0008047: enzyme activator activity4.30E-04
30GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.15E-04
31GO:0004802: transketolase activity5.15E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.15E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.15E-04
34GO:0050017: L-3-cyanoalanine synthase activity5.15E-04
35GO:0004618: phosphoglycerate kinase activity5.15E-04
36GO:0004047: aminomethyltransferase activity5.15E-04
37GO:0004817: cysteine-tRNA ligase activity5.15E-04
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.15E-04
39GO:0002161: aminoacyl-tRNA editing activity8.37E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity8.37E-04
41GO:0004075: biotin carboxylase activity8.37E-04
42GO:0004751: ribose-5-phosphate isomerase activity8.37E-04
43GO:0030267: glyoxylate reductase (NADP) activity8.37E-04
44GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity8.37E-04
45GO:0070402: NADPH binding8.37E-04
46GO:0016531: copper chaperone activity8.37E-04
47GO:0019829: cation-transporting ATPase activity8.37E-04
48GO:0017150: tRNA dihydrouridine synthase activity8.37E-04
49GO:0016992: lipoate synthase activity8.37E-04
50GO:0005198: structural molecule activity1.17E-03
51GO:0048487: beta-tubulin binding1.19E-03
52GO:0016149: translation release factor activity, codon specific1.19E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.19E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.19E-03
55GO:0022891: substrate-specific transmembrane transporter activity1.42E-03
56GO:0043495: protein anchor1.59E-03
57GO:0004845: uracil phosphoribosyltransferase activity1.59E-03
58GO:0004345: glucose-6-phosphate dehydrogenase activity1.59E-03
59GO:0016836: hydro-lyase activity1.59E-03
60GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.59E-03
61GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.59E-03
62GO:0010328: auxin influx transmembrane transporter activity1.59E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor2.03E-03
64GO:0003989: acetyl-CoA carboxylase activity2.03E-03
65GO:0009922: fatty acid elongase activity2.03E-03
66GO:0004791: thioredoxin-disulfide reductase activity2.09E-03
67GO:0016208: AMP binding2.50E-03
68GO:0004332: fructose-bisphosphate aldolase activity2.50E-03
69GO:0004849: uridine kinase activity3.00E-03
70GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.00E-03
71GO:0004124: cysteine synthase activity3.00E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.00E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.00E-03
74GO:0019899: enzyme binding3.54E-03
75GO:0008235: metalloexopeptidase activity3.54E-03
76GO:0005375: copper ion transmembrane transporter activity4.70E-03
77GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.70E-03
78GO:0003747: translation release factor activity5.32E-03
79GO:0042802: identical protein binding6.23E-03
80GO:0004364: glutathione transferase activity7.07E-03
81GO:0004177: aminopeptidase activity7.35E-03
82GO:0044183: protein binding involved in protein folding7.35E-03
83GO:0047372: acylglycerol lipase activity7.35E-03
84GO:0051537: 2 iron, 2 sulfur cluster binding7.96E-03
85GO:0000049: tRNA binding8.08E-03
86GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.59E-03
87GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.84E-03
88GO:0004089: carbonate dehydratase activity8.84E-03
89GO:0031072: heat shock protein binding8.84E-03
90GO:0008266: poly(U) RNA binding9.62E-03
91GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.93E-03
92GO:0015171: amino acid transmembrane transporter activity1.10E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.13E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.13E-02
95GO:0031409: pigment binding1.13E-02
96GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.13E-02
97GO:0004407: histone deacetylase activity1.21E-02
98GO:0005528: FK506 binding1.21E-02
99GO:0016740: transferase activity1.29E-02
100GO:0016491: oxidoreductase activity1.36E-02
101GO:0004176: ATP-dependent peptidase activity1.39E-02
102GO:0019706: protein-cysteine S-palmitoyltransferase activity1.39E-02
103GO:0042803: protein homodimerization activity1.40E-02
104GO:0051082: unfolded protein binding1.42E-02
105GO:0003924: GTPase activity1.73E-02
106GO:0047134: protein-disulfide reductase activity1.77E-02
107GO:0004812: aminoacyl-tRNA ligase activity1.77E-02
108GO:0005525: GTP binding2.02E-02
109GO:0050662: coenzyme binding2.07E-02
110GO:0005509: calcium ion binding2.44E-02
111GO:0008483: transaminase activity2.74E-02
112GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.47E-02
113GO:0008236: serine-type peptidase activity3.47E-02
114GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.47E-02
115GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.59E-02
116GO:0008168: methyltransferase activity3.65E-02
117GO:0004222: metalloendopeptidase activity3.85E-02
118GO:0003746: translation elongation factor activity4.25E-02
119GO:0000987: core promoter proximal region sequence-specific DNA binding4.39E-02
120GO:0051539: 4 iron, 4 sulfur cluster binding4.67E-02
121GO:0050661: NADP binding4.67E-02
122GO:0003729: mRNA binding4.89E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast3.27E-62
3GO:0009570: chloroplast stroma2.12E-34
4GO:0009941: chloroplast envelope2.59E-33
5GO:0009535: chloroplast thylakoid membrane1.37E-20
6GO:0009579: thylakoid6.85E-14
7GO:0009543: chloroplast thylakoid lumen4.90E-13
8GO:0009534: chloroplast thylakoid3.94E-09
9GO:0031977: thylakoid lumen8.24E-09
10GO:0009654: photosystem II oxygen evolving complex3.88E-08
11GO:0030095: chloroplast photosystem II8.08E-07
12GO:0031969: chloroplast membrane7.64E-06
13GO:0009523: photosystem II1.13E-05
14GO:0019898: extrinsic component of membrane1.13E-05
15GO:0005840: ribosome4.06E-05
16GO:0042651: thylakoid membrane7.33E-05
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.32E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]2.32E-04
19GO:0009547: plastid ribosome2.32E-04
20GO:0010319: stromule3.33E-04
21GO:0022626: cytosolic ribosome5.57E-04
22GO:0000312: plastid small ribosomal subunit7.26E-04
23GO:0009528: plastid inner membrane8.37E-04
24GO:0009536: plastid1.09E-03
25GO:0005960: glycine cleavage complex1.19E-03
26GO:0009331: glycerol-3-phosphate dehydrogenase complex1.19E-03
27GO:0009532: plastid stroma1.20E-03
28GO:0009527: plastid outer membrane1.59E-03
29GO:0009533: chloroplast stromal thylakoid3.54E-03
30GO:0009707: chloroplast outer membrane4.50E-03
31GO:0009539: photosystem II reaction center4.70E-03
32GO:0045298: tubulin complex5.32E-03
33GO:0005763: mitochondrial small ribosomal subunit5.32E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.32E-03
35GO:0000311: plastid large ribosomal subunit8.08E-03
36GO:0030659: cytoplasmic vesicle membrane9.62E-03
37GO:0030076: light-harvesting complex1.04E-02
38GO:0043234: protein complex1.13E-02
39GO:0015935: small ribosomal subunit1.39E-02
40GO:0009706: chloroplast inner membrane1.42E-02
41GO:0010287: plastoglobule1.68E-02
42GO:0005871: kinesin complex1.77E-02
43GO:0009522: photosystem I2.07E-02
44GO:0005759: mitochondrial matrix2.23E-02
45GO:0005778: peroxisomal membrane2.74E-02
46GO:0022627: cytosolic small ribosomal subunit3.25E-02
47GO:0016020: membrane3.26E-02
48GO:0015934: large ribosomal subunit3.98E-02
49GO:0005874: microtubule4.53E-02
<
Gene type



Gene DE type