co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G26070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0090042: tubulin deacetylation	0.00E+00
4	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	7.82E-08
8	GO:0009658: chloroplast organization	7.59E-06
9	GO:0009853: photorespiration	2.28E-05
10	GO:0006400: tRNA modification	8.22E-05
11	GO:0009704: de-etiolation	1.06E-04
12	GO:0071482: cellular response to light stimulus	1.33E-04
13	GO:0009657: plastid organization	1.33E-04
14	GO:0071277: cellular response to calcium ion	1.50E-04
15	GO:0009443: pyridoxal 5'-phosphate salvage	1.50E-04
16	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.50E-04
17	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.42E-04
18	GO:0034755: iron ion transmembrane transport	3.42E-04
19	GO:0080005: photosystem stoichiometry adjustment	3.42E-04
20	GO:0009662: etioplast organization	3.42E-04
21	GO:0097054: L-glutamate biosynthetic process	3.42E-04
22	GO:1904143: positive regulation of carotenoid biosynthetic process	3.42E-04
23	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.42E-04
24	GO:0006094: gluconeogenesis	3.54E-04
25	GO:0019253: reductive pentose-phosphate cycle	4.00E-04
26	GO:0090351: seedling development	4.48E-04
27	GO:0045910: negative regulation of DNA recombination	5.61E-04
28	GO:0006000: fructose metabolic process	5.61E-04
29	GO:0006954: inflammatory response	5.61E-04
30	GO:0016226: iron-sulfur cluster assembly	7.29E-04
31	GO:0009152: purine ribonucleotide biosynthetic process	8.03E-04
32	GO:0046653: tetrahydrofolate metabolic process	8.03E-04
33	GO:0006537: glutamate biosynthetic process	8.03E-04
34	GO:0010731: protein glutathionylation	8.03E-04
35	GO:0043572: plastid fission	8.03E-04
36	GO:0046836: glycolipid transport	8.03E-04
37	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.03E-04
38	GO:0019464: glycine decarboxylation via glycine cleavage system	1.06E-03
39	GO:0071483: cellular response to blue light	1.06E-03
40	GO:0010021: amylopectin biosynthetic process	1.06E-03
41	GO:0019676: ammonia assimilation cycle	1.06E-03
42	GO:0019252: starch biosynthetic process	1.23E-03
43	GO:0006544: glycine metabolic process	1.35E-03
44	GO:0043097: pyrimidine nucleoside salvage	1.35E-03
45	GO:0080110: sporopollenin biosynthetic process	1.35E-03
46	GO:0006564: L-serine biosynthetic process	1.35E-03
47	GO:0006461: protein complex assembly	1.35E-03
48	GO:0006206: pyrimidine nucleobase metabolic process	1.65E-03
49	GO:0010190: cytochrome b6f complex assembly	1.65E-03
50	GO:0006563: L-serine metabolic process	1.65E-03
51	GO:0042549: photosystem II stabilization	1.65E-03
52	GO:0042026: protein refolding	1.98E-03
53	GO:1901259: chloroplast rRNA processing	1.98E-03
54	GO:0006458: 'de novo' protein folding	1.98E-03
55	GO:0030488: tRNA methylation	1.98E-03
56	GO:0009451: RNA modification	2.16E-03
57	GO:0009645: response to low light intensity stimulus	2.33E-03
58	GO:0048564: photosystem I assembly	2.70E-03
59	GO:0005978: glycogen biosynthetic process	2.70E-03
60	GO:0006002: fructose 6-phosphate metabolic process	3.08E-03
61	GO:0017004: cytochrome complex assembly	3.08E-03
62	GO:0006098: pentose-phosphate shunt	3.49E-03
63	GO:0090333: regulation of stomatal closure	3.49E-03
64	GO:0000373: Group II intron splicing	3.49E-03
65	GO:0000902: cell morphogenesis	3.49E-03
66	GO:0035999: tetrahydrofolate interconversion	3.91E-03
67	GO:1900865: chloroplast RNA modification	3.91E-03
68	GO:0005982: starch metabolic process	3.91E-03
69	GO:0045036: protein targeting to chloroplast	4.35E-03
70	GO:0006298: mismatch repair	4.35E-03
71	GO:0006415: translational termination	4.80E-03
72	GO:0006879: cellular iron ion homeostasis	4.80E-03
73	GO:0006352: DNA-templated transcription, initiation	4.80E-03
74	GO:0018119: peptidyl-cysteine S-nitrosylation	4.80E-03
75	GO:0006810: transport	5.56E-03
76	GO:0015979: photosynthesis	5.67E-03
77	GO:0005986: sucrose biosynthetic process	5.75E-03
78	GO:0010628: positive regulation of gene expression	5.75E-03
79	GO:0046686: response to cadmium ion	6.17E-03
80	GO:0006541: glutamine metabolic process	6.25E-03
81	GO:0010020: chloroplast fission	6.25E-03
82	GO:0010207: photosystem II assembly	6.25E-03
83	GO:0006508: proteolysis	6.54E-03
84	GO:0016575: histone deacetylation	8.40E-03
85	GO:0009768: photosynthesis, light harvesting in photosystem I	8.40E-03
86	GO:0061077: chaperone-mediated protein folding	8.97E-03
87	GO:0006730: one-carbon metabolic process	9.56E-03
88	GO:0009058: biosynthetic process	1.01E-02
89	GO:0010584: pollen exine formation	1.08E-02
90	GO:0016117: carotenoid biosynthetic process	1.14E-02
91	GO:0006520: cellular amino acid metabolic process	1.27E-02
92	GO:0009741: response to brassinosteroid	1.27E-02
93	GO:0009646: response to absence of light	1.34E-02
94	GO:0006814: sodium ion transport	1.34E-02
95	GO:0055114: oxidation-reduction process	1.39E-02
96	GO:0009791: post-embryonic development	1.41E-02
97	GO:0009735: response to cytokinin	1.46E-02
98	GO:0080156: mitochondrial mRNA modification	1.47E-02
99	GO:0016032: viral process	1.55E-02
100	GO:0032502: developmental process	1.55E-02
101	GO:0009416: response to light stimulus	1.63E-02
102	GO:0001666: response to hypoxia	1.92E-02
103	GO:0010027: thylakoid membrane organization	1.92E-02
104	GO:0009816: defense response to bacterium, incompatible interaction	1.99E-02
105	GO:0018298: protein-chromophore linkage	2.31E-02
106	GO:0046777: protein autophosphorylation	2.71E-02
107	GO:0016051: carbohydrate biosynthetic process	2.74E-02
108	GO:0051707: response to other organism	3.28E-02
109	GO:0009744: response to sucrose	3.28E-02
110	GO:0009644: response to high light intensity	3.47E-02
111	GO:0009636: response to toxic substance	3.56E-02
112	GO:0032259: methylation	3.58E-02
113	GO:0006855: drug transmembrane transport	3.66E-02
114	GO:0009751: response to salicylic acid	3.69E-02
115	GO:0009793: embryo development ending in seed dormancy	3.78E-02
116	GO:0006364: rRNA processing	4.05E-02
117	GO:0006417: regulation of translation	4.36E-02
118	GO:0006096: glycolytic process	4.56E-02
119	GO:0009626: plant-type hypersensitive response	4.78E-02
120	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0043014: alpha-tubulin binding	0.00E+00
7	GO:0008974: phosphoribulokinase activity	0.00E+00
8	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0046608: carotenoid isomerase activity	0.00E+00
10	GO:0051861: glycolipid binding	1.80E-05
11	GO:0051536: iron-sulfur cluster binding	2.40E-05
12	GO:0004033: aldo-keto reductase (NADP) activity	1.06E-04
13	GO:0003867: 4-aminobutyrate transaminase activity	1.50E-04
14	GO:0070006: metalloaminopeptidase activity	1.50E-04
15	GO:0005080: protein kinase C binding	1.50E-04
16	GO:0008242: omega peptidase activity	1.50E-04
17	GO:0016041: glutamate synthase (ferredoxin) activity	1.50E-04
18	GO:0030941: chloroplast targeting sequence binding	1.50E-04
19	GO:0004222: metalloendopeptidase activity	2.81E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.42E-04
21	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.42E-04
22	GO:0034722: gamma-glutamyl-peptidase activity	3.42E-04
23	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.42E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	3.42E-04
25	GO:0004519: endonuclease activity	3.45E-04
26	GO:0043169: cation binding	5.61E-04
27	GO:0032947: protein complex scaffold	5.61E-04
28	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.61E-04
29	GO:0070402: NADPH binding	5.61E-04
30	GO:0008864: formyltetrahydrofolate deformylase activity	5.61E-04
31	GO:0004176: ATP-dependent peptidase activity	6.67E-04
32	GO:0017089: glycolipid transporter activity	8.03E-04
33	GO:0048487: beta-tubulin binding	8.03E-04
34	GO:0016149: translation release factor activity, codon specific	8.03E-04
35	GO:0008508: bile acid:sodium symporter activity	8.03E-04
36	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.06E-03
37	GO:0016987: sigma factor activity	1.06E-03
38	GO:0001053: plastid sigma factor activity	1.06E-03
39	GO:0016491: oxidoreductase activity	1.23E-03
40	GO:0004372: glycine hydroxymethyltransferase activity	1.35E-03
41	GO:0051538: 3 iron, 4 sulfur cluster binding	1.35E-03
42	GO:0004332: fructose-bisphosphate aldolase activity	1.65E-03
43	GO:0042578: phosphoric ester hydrolase activity	1.65E-03
44	GO:0030983: mismatched DNA binding	1.65E-03
45	GO:0008237: metallopeptidase activity	1.68E-03
46	GO:0004849: uridine kinase activity	1.98E-03
47	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.98E-03
48	GO:0043022: ribosome binding	2.70E-03
49	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.08E-03
50	GO:0003747: translation release factor activity	3.49E-03
51	GO:0005381: iron ion transmembrane transporter activity	3.91E-03
52	GO:0015386: potassium:proton antiporter activity	4.80E-03
53	GO:0004177: aminopeptidase activity	4.80E-03
54	GO:0044183: protein binding involved in protein folding	4.80E-03
55	GO:0004022: alcohol dehydrogenase (NAD) activity	5.75E-03
56	GO:0008266: poly(U) RNA binding	6.25E-03
57	GO:0031409: pigment binding	7.30E-03
58	GO:0004407: histone deacetylase activity	7.84E-03
59	GO:0005528: FK506 binding	7.84E-03
60	GO:0043424: protein histidine kinase binding	8.40E-03
61	GO:0015079: potassium ion transmembrane transporter activity	8.40E-03
62	GO:0003824: catalytic activity	1.25E-02
63	GO:0050662: coenzyme binding	1.34E-02
64	GO:0048038: quinone binding	1.47E-02
65	GO:0003723: RNA binding	1.53E-02
66	GO:0003684: damaged DNA binding	1.69E-02
67	GO:0016597: amino acid binding	1.84E-02
68	GO:0008168: methyltransferase activity	1.97E-02
69	GO:0016168: chlorophyll binding	1.99E-02
70	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.07E-02
71	GO:0004721: phosphoprotein phosphatase activity	2.15E-02
72	GO:0004683: calmodulin-dependent protein kinase activity	2.15E-02
73	GO:0015238: drug transmembrane transporter activity	2.40E-02
74	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.56E-02
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.00E-02
76	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.04E-02
77	GO:0004364: glutathione transferase activity	3.19E-02
78	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.38E-02
79	GO:0043621: protein self-association	3.47E-02
80	GO:0005198: structural molecule activity	3.56E-02
81	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.66E-02
82	GO:0051287: NAD binding	3.76E-02
83	GO:0009055: electron carrier activity	4.01E-02
84	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.05E-02
85	GO:0005215: transporter activity	4.45E-02
86	GO:0046872: metal ion binding	4.53E-02
87	GO:0016874: ligase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	6.23E-37
3	GO:0009535: chloroplast thylakoid membrane	2.62E-16
4	GO:0009570: chloroplast stroma	4.25E-12
5	GO:0009941: chloroplast envelope	2.63E-10
6	GO:0009534: chloroplast thylakoid	1.85E-09
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-08
8	GO:0009579: thylakoid	4.21E-06
9	GO:0009543: chloroplast thylakoid lumen	1.54E-05
10	GO:0031969: chloroplast membrane	1.37E-04
11	GO:0009782: photosystem I antenna complex	1.50E-04
12	GO:0009706: chloroplast inner membrane	1.06E-03
13	GO:0010319: stromule	1.68E-03
14	GO:0005759: mitochondrial matrix	1.86E-03
15	GO:0009533: chloroplast stromal thylakoid	2.33E-03
16	GO:0031359: integral component of chloroplast outer membrane	2.33E-03
17	GO:0009501: amyloplast	2.70E-03
18	GO:0031977: thylakoid lumen	3.67E-03
19	GO:0030095: chloroplast photosystem II	6.25E-03
20	GO:0030076: light-harvesting complex	6.77E-03
21	GO:0009654: photosystem II oxygen evolving complex	8.40E-03
22	GO:0043231: intracellular membrane-bounded organelle	8.90E-03
23	GO:0010287: plastoglobule	9.03E-03
24	GO:0048046: apoplast	9.08E-03
25	GO:0009523: photosystem II	1.41E-02
26	GO:0019898: extrinsic component of membrane	1.41E-02
27	GO:0009536: plastid	1.48E-02
28	GO:0030529: intracellular ribonucleoprotein complex	1.92E-02
29	GO:0009707: chloroplast outer membrane	2.31E-02
30	GO:0016021: integral component of membrane	2.33E-02