Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046109: uridine biosynthetic process0.00E+00
2GO:0006858: extracellular transport0.00E+00
3GO:0043201: response to leucine0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0032497: detection of lipopolysaccharide0.00E+00
6GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
7GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
8GO:0006983: ER overload response0.00E+00
9GO:0080052: response to histidine0.00E+00
10GO:0010793: regulation of mRNA export from nucleus0.00E+00
11GO:0071578: zinc II ion transmembrane import0.00E+00
12GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
13GO:0000188: inactivation of MAPK activity0.00E+00
14GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
15GO:0006182: cGMP biosynthetic process0.00E+00
16GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
17GO:0010055: atrichoblast differentiation0.00E+00
18GO:0043066: negative regulation of apoptotic process6.25E-06
19GO:0051788: response to misfolded protein6.25E-06
20GO:0010150: leaf senescence8.80E-06
21GO:0006468: protein phosphorylation2.11E-05
22GO:0009620: response to fungus1.43E-04
23GO:0006014: D-ribose metabolic process1.90E-04
24GO:0043248: proteasome assembly1.90E-04
25GO:0045087: innate immune response2.52E-04
26GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.57E-04
27GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.73E-04
28GO:0010941: regulation of cell death3.73E-04
29GO:0010726: positive regulation of hydrogen peroxide metabolic process3.73E-04
30GO:1901183: positive regulation of camalexin biosynthetic process3.73E-04
31GO:0035344: hypoxanthine transport3.73E-04
32GO:0010265: SCF complex assembly3.73E-04
33GO:0098721: uracil import across plasma membrane3.73E-04
34GO:0042759: long-chain fatty acid biosynthetic process3.73E-04
35GO:0098702: adenine import across plasma membrane3.73E-04
36GO:0032107: regulation of response to nutrient levels3.73E-04
37GO:0048455: stamen formation3.73E-04
38GO:0046167: glycerol-3-phosphate biosynthetic process3.73E-04
39GO:0035266: meristem growth3.73E-04
40GO:0098710: guanine import across plasma membrane3.73E-04
41GO:0048363: mucilage pectin metabolic process3.73E-04
42GO:0007292: female gamete generation3.73E-04
43GO:0051938: L-glutamate import3.73E-04
44GO:0019567: arabinose biosynthetic process3.73E-04
45GO:0010120: camalexin biosynthetic process5.11E-04
46GO:0006812: cation transport5.45E-04
47GO:0009821: alkaloid biosynthetic process6.13E-04
48GO:0009617: response to bacterium6.73E-04
49GO:0009751: response to salicylic acid7.67E-04
50GO:0019374: galactolipid metabolic process8.10E-04
51GO:0015865: purine nucleotide transport8.10E-04
52GO:0042939: tripeptide transport8.10E-04
53GO:0019441: tryptophan catabolic process to kynurenine8.10E-04
54GO:0043091: L-arginine import8.10E-04
55GO:0080183: response to photooxidative stress8.10E-04
56GO:0015802: basic amino acid transport8.10E-04
57GO:0050684: regulation of mRNA processing8.10E-04
58GO:0006641: triglyceride metabolic process8.10E-04
59GO:0043069: negative regulation of programmed cell death8.43E-04
60GO:1900055: regulation of leaf senescence1.31E-03
61GO:0019563: glycerol catabolic process1.31E-03
62GO:0032784: regulation of DNA-templated transcription, elongation1.31E-03
63GO:0060968: regulation of gene silencing1.31E-03
64GO:0006499: N-terminal protein myristoylation1.47E-03
65GO:0009225: nucleotide-sugar metabolic process1.58E-03
66GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.64E-03
67GO:0072334: UDP-galactose transmembrane transport1.89E-03
68GO:0006072: glycerol-3-phosphate metabolic process1.89E-03
69GO:0009399: nitrogen fixation1.89E-03
70GO:0080001: mucilage extrusion from seed coat1.89E-03
71GO:0046513: ceramide biosynthetic process1.89E-03
72GO:0010116: positive regulation of abscisic acid biosynthetic process1.89E-03
73GO:2001289: lipid X metabolic process1.89E-03
74GO:0070301: cellular response to hydrogen peroxide1.89E-03
75GO:0006107: oxaloacetate metabolic process1.89E-03
76GO:0009052: pentose-phosphate shunt, non-oxidative branch1.89E-03
77GO:0046902: regulation of mitochondrial membrane permeability1.89E-03
78GO:0033358: UDP-L-arabinose biosynthetic process2.54E-03
79GO:0061088: regulation of sequestering of zinc ion2.54E-03
80GO:0006734: NADH metabolic process2.54E-03
81GO:0010188: response to microbial phytotoxin2.54E-03
82GO:0042938: dipeptide transport2.54E-03
83GO:0006542: glutamine biosynthetic process2.54E-03
84GO:0045227: capsule polysaccharide biosynthetic process2.54E-03
85GO:0033320: UDP-D-xylose biosynthetic process2.54E-03
86GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.83E-03
87GO:0006012: galactose metabolic process2.83E-03
88GO:0007166: cell surface receptor signaling pathway2.93E-03
89GO:0046686: response to cadmium ion3.05E-03
90GO:0010225: response to UV-C3.25E-03
91GO:0042742: defense response to bacterium3.27E-03
92GO:0016310: phosphorylation3.40E-03
93GO:0006885: regulation of pH3.88E-03
94GO:1900425: negative regulation of defense response to bacterium4.02E-03
95GO:0002238: response to molecule of fungal origin4.02E-03
96GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly4.02E-03
97GO:0006561: proline biosynthetic process4.02E-03
98GO:0010942: positive regulation of cell death4.02E-03
99GO:0048827: phyllome development4.02E-03
100GO:0048232: male gamete generation4.02E-03
101GO:0042732: D-xylose metabolic process4.02E-03
102GO:0048544: recognition of pollen4.18E-03
103GO:0019252: starch biosynthetic process4.48E-03
104GO:0006952: defense response5.10E-03
105GO:0042773: ATP synthesis coupled electron transport5.73E-03
106GO:1900057: positive regulation of leaf senescence5.73E-03
107GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.73E-03
108GO:0050829: defense response to Gram-negative bacterium5.73E-03
109GO:1902074: response to salt5.73E-03
110GO:0048528: post-embryonic root development5.73E-03
111GO:0006744: ubiquinone biosynthetic process5.73E-03
112GO:1900056: negative regulation of leaf senescence5.73E-03
113GO:0010252: auxin homeostasis5.81E-03
114GO:0006904: vesicle docking involved in exocytosis6.18E-03
115GO:0009850: auxin metabolic process6.65E-03
116GO:0010078: maintenance of root meristem identity6.65E-03
117GO:1900150: regulation of defense response to fungus6.65E-03
118GO:0006644: phospholipid metabolic process6.65E-03
119GO:0010200: response to chitin6.79E-03
120GO:0009615: response to virus6.94E-03
121GO:0046777: protein autophosphorylation7.14E-03
122GO:0009827: plant-type cell wall modification7.64E-03
123GO:0017004: cytochrome complex assembly7.64E-03
124GO:0015996: chlorophyll catabolic process7.64E-03
125GO:0045454: cell redox homeostasis8.48E-03
126GO:0009817: defense response to fungus, incompatible interaction9.07E-03
127GO:0010311: lateral root formation9.54E-03
128GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.74E-03
129GO:0008202: steroid metabolic process9.74E-03
130GO:0010043: response to zinc ion1.05E-02
131GO:0048829: root cap development1.09E-02
132GO:0010629: negative regulation of gene expression1.09E-02
133GO:0009089: lysine biosynthetic process via diaminopimelate1.20E-02
134GO:0043085: positive regulation of catalytic activity1.20E-02
135GO:0009682: induced systemic resistance1.20E-02
136GO:0030148: sphingolipid biosynthetic process1.20E-02
137GO:0010015: root morphogenesis1.20E-02
138GO:0000038: very long-chain fatty acid metabolic process1.20E-02
139GO:0009733: response to auxin1.23E-02
140GO:0009753: response to jasmonic acid1.30E-02
141GO:0006470: protein dephosphorylation1.33E-02
142GO:0071365: cellular response to auxin stimulus1.33E-02
143GO:0000266: mitochondrial fission1.33E-02
144GO:0012501: programmed cell death1.33E-02
145GO:0006887: exocytosis1.37E-02
146GO:0006897: endocytosis1.37E-02
147GO:0006626: protein targeting to mitochondrion1.45E-02
148GO:0006108: malate metabolic process1.45E-02
149GO:0009718: anthocyanin-containing compound biosynthetic process1.45E-02
150GO:0002237: response to molecule of bacterial origin1.58E-02
151GO:0009933: meristem structural organization1.58E-02
152GO:0007030: Golgi organization1.71E-02
153GO:0090351: seedling development1.71E-02
154GO:0070588: calcium ion transmembrane transport1.71E-02
155GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.81E-02
156GO:0042538: hyperosmotic salinity response1.87E-02
157GO:0030150: protein import into mitochondrial matrix1.99E-02
158GO:2000377: regulation of reactive oxygen species metabolic process1.99E-02
159GO:0005992: trehalose biosynthetic process1.99E-02
160GO:0009809: lignin biosynthetic process2.01E-02
161GO:0006813: potassium ion transport2.01E-02
162GO:0010224: response to UV-B2.08E-02
163GO:0006874: cellular calcium ion homeostasis2.14E-02
164GO:0003333: amino acid transmembrane transport2.29E-02
165GO:0016998: cell wall macromolecule catabolic process2.29E-02
166GO:0006096: glycolytic process2.38E-02
167GO:0048366: leaf development2.40E-02
168GO:0030433: ubiquitin-dependent ERAD pathway2.44E-02
169GO:0071456: cellular response to hypoxia2.44E-02
170GO:0010227: floral organ abscission2.60E-02
171GO:0016192: vesicle-mediated transport2.73E-02
172GO:0009306: protein secretion2.76E-02
173GO:0010087: phloem or xylem histogenesis3.08E-02
174GO:0006662: glycerol ether metabolic process3.25E-02
175GO:0046323: glucose import3.25E-02
176GO:0042752: regulation of circadian rhythm3.42E-02
177GO:0006623: protein targeting to vacuole3.60E-02
178GO:0071554: cell wall organization or biogenesis3.78E-02
179GO:0002229: defense response to oomycetes3.78E-02
180GO:0010193: response to ozone3.78E-02
181GO:0009058: biosynthetic process3.78E-02
182GO:0007264: small GTPase mediated signal transduction3.96E-02
183GO:0010583: response to cyclopentenone3.96E-02
184GO:0016042: lipid catabolic process4.00E-02
185GO:0030163: protein catabolic process4.14E-02
186GO:0009408: response to heat4.15E-02
187GO:0006633: fatty acid biosynthetic process4.49E-02
188GO:0040008: regulation of growth4.71E-02
RankGO TermAdjusted P value
1GO:0015591: D-ribose transmembrane transporter activity0.00E+00
2GO:0015148: D-xylose transmembrane transporter activity0.00E+00
3GO:0004370: glycerol kinase activity0.00E+00
4GO:0015575: mannitol transmembrane transporter activity0.00E+00
5GO:0016504: peptidase activator activity0.00E+00
6GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
7GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
8GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
9GO:0015576: sorbitol transmembrane transporter activity0.00E+00
10GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
11GO:0070577: lysine-acetylated histone binding0.00E+00
12GO:0016301: kinase activity3.77E-08
13GO:0004674: protein serine/threonine kinase activity4.29E-08
14GO:0005524: ATP binding4.25E-07
15GO:0004383: guanylate cyclase activity2.19E-05
16GO:0001653: peptide receptor activity4.81E-05
17GO:0010279: indole-3-acetic acid amido synthetase activity8.50E-05
18GO:0009055: electron carrier activity2.16E-04
19GO:0004747: ribokinase activity2.57E-04
20GO:0003978: UDP-glucose 4-epimerase activity2.57E-04
21GO:0015208: guanine transmembrane transporter activity3.73E-04
22GO:0015294: solute:cation symporter activity3.73E-04
23GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.73E-04
24GO:0015207: adenine transmembrane transporter activity3.73E-04
25GO:0019707: protein-cysteine S-acyltransferase activity3.73E-04
26GO:0015168: glycerol transmembrane transporter activity3.73E-04
27GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity3.73E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity3.73E-04
29GO:0008865: fructokinase activity4.18E-04
30GO:0030955: potassium ion binding7.24E-04
31GO:0016844: strictosidine synthase activity7.24E-04
32GO:0004743: pyruvate kinase activity7.24E-04
33GO:0045140: inositol phosphoceramide synthase activity8.10E-04
34GO:0004061: arylformamidase activity8.10E-04
35GO:0043141: ATP-dependent 5'-3' DNA helicase activity8.10E-04
36GO:0015036: disulfide oxidoreductase activity8.10E-04
37GO:0019200: carbohydrate kinase activity8.10E-04
38GO:0042937: tripeptide transporter activity8.10E-04
39GO:0050291: sphingosine N-acyltransferase activity8.10E-04
40GO:0015035: protein disulfide oxidoreductase activity1.08E-03
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.31E-03
42GO:0004751: ribose-5-phosphate isomerase activity1.31E-03
43GO:0016805: dipeptidase activity1.31E-03
44GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.57E-03
45GO:0015181: arginine transmembrane transporter activity1.89E-03
46GO:0010178: IAA-amino acid conjugate hydrolase activity1.89E-03
47GO:0015189: L-lysine transmembrane transporter activity1.89E-03
48GO:0005354: galactose transmembrane transporter activity1.89E-03
49GO:0003954: NADH dehydrogenase activity1.95E-03
50GO:0015210: uracil transmembrane transporter activity2.54E-03
51GO:0070628: proteasome binding2.54E-03
52GO:0005313: L-glutamate transmembrane transporter activity2.54E-03
53GO:0015368: calcium:cation antiporter activity2.54E-03
54GO:0050373: UDP-arabinose 4-epimerase activity2.54E-03
55GO:0042936: dipeptide transporter activity2.54E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.54E-03
57GO:0015369: calcium:proton antiporter activity2.54E-03
58GO:0005452: inorganic anion exchanger activity3.25E-03
59GO:0005496: steroid binding3.25E-03
60GO:0004040: amidase activity3.25E-03
61GO:0005471: ATP:ADP antiporter activity3.25E-03
62GO:0004356: glutamate-ammonia ligase activity3.25E-03
63GO:0015301: anion:anion antiporter activity3.25E-03
64GO:0005459: UDP-galactose transmembrane transporter activity3.25E-03
65GO:0015145: monosaccharide transmembrane transporter activity3.25E-03
66GO:0005451: monovalent cation:proton antiporter activity3.60E-03
67GO:0047714: galactolipase activity4.02E-03
68GO:0004556: alpha-amylase activity4.02E-03
69GO:0015562: efflux transmembrane transporter activity4.02E-03
70GO:0036402: proteasome-activating ATPase activity4.02E-03
71GO:0016615: malate dehydrogenase activity4.02E-03
72GO:0048040: UDP-glucuronate decarboxylase activity4.02E-03
73GO:0031593: polyubiquitin binding4.02E-03
74GO:0015299: solute:proton antiporter activity4.18E-03
75GO:0102391: decanoate--CoA ligase activity4.85E-03
76GO:0030060: L-malate dehydrogenase activity4.85E-03
77GO:0070403: NAD+ binding4.85E-03
78GO:0015385: sodium:proton antiporter activity5.46E-03
79GO:0004620: phospholipase activity5.73E-03
80GO:0004467: long-chain fatty acid-CoA ligase activity5.73E-03
81GO:0008235: metalloexopeptidase activity5.73E-03
82GO:0050660: flavin adenine dinucleotide binding5.80E-03
83GO:0052747: sinapyl alcohol dehydrogenase activity6.65E-03
84GO:0015491: cation:cation antiporter activity6.65E-03
85GO:0008970: phosphatidylcholine 1-acylhydrolase activity7.64E-03
86GO:0008142: oxysterol binding7.64E-03
87GO:0030247: polysaccharide binding8.18E-03
88GO:0005509: calcium ion binding8.39E-03
89GO:0071949: FAD binding8.66E-03
90GO:0003678: DNA helicase activity8.66E-03
91GO:0015174: basic amino acid transmembrane transporter activity9.74E-03
92GO:0047617: acyl-CoA hydrolase activity9.74E-03
93GO:0030145: manganese ion binding1.05E-02
94GO:0004713: protein tyrosine kinase activity1.09E-02
95GO:0008171: O-methyltransferase activity1.09E-02
96GO:0008047: enzyme activator activity1.09E-02
97GO:0004177: aminopeptidase activity1.20E-02
98GO:0045551: cinnamyl-alcohol dehydrogenase activity1.33E-02
99GO:0005388: calcium-transporting ATPase activity1.45E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.45E-02
101GO:0015266: protein channel activity1.45E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.45E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding1.61E-02
104GO:0017025: TBP-class protein binding1.71E-02
105GO:0004970: ionotropic glutamate receptor activity1.71E-02
106GO:0005217: intracellular ligand-gated ion channel activity1.71E-02
107GO:0004725: protein tyrosine phosphatase activity1.85E-02
108GO:0000287: magnesium ion binding1.91E-02
109GO:0001046: core promoter sequence-specific DNA binding1.99E-02
110GO:0051536: iron-sulfur cluster binding1.99E-02
111GO:0005385: zinc ion transmembrane transporter activity1.99E-02
112GO:0008324: cation transmembrane transporter activity2.14E-02
113GO:0043424: protein histidine kinase binding2.14E-02
114GO:0031625: ubiquitin protein ligase binding2.23E-02
115GO:0016887: ATPase activity2.25E-02
116GO:0019706: protein-cysteine S-palmitoyltransferase activity2.29E-02
117GO:0045735: nutrient reservoir activity2.38E-02
118GO:0061630: ubiquitin protein ligase activity2.73E-02
119GO:0047134: protein-disulfide reductase activity2.92E-02
120GO:0005215: transporter activity3.33E-02
121GO:0005355: glucose transmembrane transporter activity3.42E-02
122GO:0050662: coenzyme binding3.42E-02
123GO:0010181: FMN binding3.42E-02
124GO:0004791: thioredoxin-disulfide reductase activity3.42E-02
125GO:0008137: NADH dehydrogenase (ubiquinone) activity3.78E-02
126GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.14E-02
127GO:0030246: carbohydrate binding4.23E-02
128GO:0008483: transaminase activity4.52E-02
129GO:0008237: metallopeptidase activity4.52E-02
130GO:0016413: O-acetyltransferase activity4.71E-02
131GO:0051213: dioxygenase activity4.91E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.37E-10
2GO:0016021: integral component of membrane4.37E-07
3GO:0030173: integral component of Golgi membrane2.57E-04
4GO:0005794: Golgi apparatus2.58E-04
5GO:0000138: Golgi trans cisterna3.73E-04
6GO:0005829: cytosol3.82E-04
7GO:0008540: proteasome regulatory particle, base subcomplex7.24E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane8.10E-04
9GO:0031314: extrinsic component of mitochondrial inner membrane8.10E-04
10GO:0070062: extracellular exosome1.89E-03
11GO:0031461: cullin-RING ubiquitin ligase complex1.89E-03
12GO:0005783: endoplasmic reticulum1.92E-03
13GO:0005746: mitochondrial respiratory chain3.25E-03
14GO:0031597: cytosolic proteasome complex4.85E-03
15GO:0016020: membrane4.87E-03
16GO:0000145: exocyst5.12E-03
17GO:0000794: condensed nuclear chromosome5.73E-03
18GO:0031595: nuclear proteasome complex5.73E-03
19GO:0031305: integral component of mitochondrial inner membrane6.65E-03
20GO:0030131: clathrin adaptor complex6.65E-03
21GO:0031901: early endosome membrane8.66E-03
22GO:0030125: clathrin vesicle coat1.09E-02
23GO:0030176: integral component of endoplasmic reticulum membrane1.71E-02
24GO:0005769: early endosome1.85E-02
25GO:0031966: mitochondrial membrane1.87E-02
26GO:0000502: proteasome complex2.01E-02
27GO:0045271: respiratory chain complex I2.14E-02
28GO:0005905: clathrin-coated pit2.29E-02
29GO:0005839: proteasome core complex2.29E-02
30GO:0005773: vacuole2.31E-02
31GO:0005744: mitochondrial inner membrane presequence translocase complex2.76E-02
32GO:0005770: late endosome3.25E-02
33GO:0009524: phragmoplast3.78E-02
34GO:0005743: mitochondrial inner membrane3.79E-02
35GO:0071944: cell periphery4.14E-02
36GO:0032580: Golgi cisterna membrane4.33E-02
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Gene type



Gene DE type