GO Enrichment Analysis of Co-expressed Genes with
AT3G25480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 7 | GO:0006223: uracil salvage | 0.00E+00 |
| 8 | GO:0006412: translation | 2.61E-11 |
| 9 | GO:0032544: plastid translation | 5.38E-11 |
| 10 | GO:0090391: granum assembly | 3.63E-06 |
| 11 | GO:0042254: ribosome biogenesis | 6.01E-06 |
| 12 | GO:0010027: thylakoid membrane organization | 6.47E-06 |
| 13 | GO:0010236: plastoquinone biosynthetic process | 2.60E-05 |
| 14 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.60E-05 |
| 15 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.90E-05 |
| 16 | GO:0042335: cuticle development | 5.54E-05 |
| 17 | GO:0010196: nonphotochemical quenching | 7.34E-05 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.40E-04 |
| 19 | GO:0042371: vitamin K biosynthetic process | 1.40E-04 |
| 20 | GO:0043686: co-translational protein modification | 1.40E-04 |
| 21 | GO:1902458: positive regulation of stomatal opening | 1.40E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.40E-04 |
| 23 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.40E-04 |
| 24 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.81E-04 |
| 25 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.20E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.20E-04 |
| 27 | GO:0006568: tryptophan metabolic process | 3.20E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.20E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.20E-04 |
| 30 | GO:0010207: photosystem II assembly | 3.63E-04 |
| 31 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.26E-04 |
| 32 | GO:0009658: chloroplast organization | 5.42E-04 |
| 33 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.53E-04 |
| 34 | GO:2001141: regulation of RNA biosynthetic process | 7.53E-04 |
| 35 | GO:0010088: phloem development | 7.53E-04 |
| 36 | GO:0006424: glutamyl-tRNA aminoacylation | 7.53E-04 |
| 37 | GO:0000413: protein peptidyl-prolyl isomerization | 9.10E-04 |
| 38 | GO:0015979: photosynthesis | 9.16E-04 |
| 39 | GO:0044206: UMP salvage | 9.98E-04 |
| 40 | GO:0031365: N-terminal protein amino acid modification | 1.26E-03 |
| 41 | GO:0006665: sphingolipid metabolic process | 1.26E-03 |
| 42 | GO:0043097: pyrimidine nucleoside salvage | 1.26E-03 |
| 43 | GO:0032543: mitochondrial translation | 1.26E-03 |
| 44 | GO:0009790: embryo development | 1.50E-03 |
| 45 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.55E-03 |
| 46 | GO:0006206: pyrimidine nucleobase metabolic process | 1.55E-03 |
| 47 | GO:0010190: cytochrome b6f complex assembly | 1.55E-03 |
| 48 | GO:0030488: tRNA methylation | 1.86E-03 |
| 49 | GO:0010189: vitamin E biosynthetic process | 1.86E-03 |
| 50 | GO:0010019: chloroplast-nucleus signaling pathway | 1.86E-03 |
| 51 | GO:0009955: adaxial/abaxial pattern specification | 1.86E-03 |
| 52 | GO:1901259: chloroplast rRNA processing | 1.86E-03 |
| 53 | GO:0042372: phylloquinone biosynthetic process | 1.86E-03 |
| 54 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.86E-03 |
| 55 | GO:0017148: negative regulation of translation | 1.86E-03 |
| 56 | GO:0006400: tRNA modification | 2.18E-03 |
| 57 | GO:0009772: photosynthetic electron transport in photosystem II | 2.18E-03 |
| 58 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.18E-03 |
| 59 | GO:2000070: regulation of response to water deprivation | 2.52E-03 |
| 60 | GO:0048564: photosystem I assembly | 2.52E-03 |
| 61 | GO:0008610: lipid biosynthetic process | 2.52E-03 |
| 62 | GO:0071482: cellular response to light stimulus | 2.88E-03 |
| 63 | GO:0015996: chlorophyll catabolic process | 2.88E-03 |
| 64 | GO:0007186: G-protein coupled receptor signaling pathway | 2.88E-03 |
| 65 | GO:0009657: plastid organization | 2.88E-03 |
| 66 | GO:0034599: cellular response to oxidative stress | 2.93E-03 |
| 67 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.65E-03 |
| 68 | GO:0045036: protein targeting to chloroplast | 4.06E-03 |
| 69 | GO:0009773: photosynthetic electron transport in photosystem I | 4.48E-03 |
| 70 | GO:0009073: aromatic amino acid family biosynthetic process | 4.48E-03 |
| 71 | GO:0043085: positive regulation of catalytic activity | 4.48E-03 |
| 72 | GO:0006352: DNA-templated transcription, initiation | 4.48E-03 |
| 73 | GO:0006457: protein folding | 4.75E-03 |
| 74 | GO:0045037: protein import into chloroplast stroma | 4.92E-03 |
| 75 | GO:0045454: cell redox homeostasis | 5.31E-03 |
| 76 | GO:0006869: lipid transport | 5.98E-03 |
| 77 | GO:0010025: wax biosynthetic process | 6.81E-03 |
| 78 | GO:0009116: nucleoside metabolic process | 7.32E-03 |
| 79 | GO:0000027: ribosomal large subunit assembly | 7.32E-03 |
| 80 | GO:0009695: jasmonic acid biosynthetic process | 7.84E-03 |
| 81 | GO:0031408: oxylipin biosynthetic process | 8.38E-03 |
| 82 | GO:0030245: cellulose catabolic process | 8.92E-03 |
| 83 | GO:0010091: trichome branching | 1.01E-02 |
| 84 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.06E-02 |
| 85 | GO:0006633: fatty acid biosynthetic process | 1.09E-02 |
| 86 | GO:0006662: glycerol ether metabolic process | 1.18E-02 |
| 87 | GO:0010182: sugar mediated signaling pathway | 1.18E-02 |
| 88 | GO:0007018: microtubule-based movement | 1.25E-02 |
| 89 | GO:0008654: phospholipid biosynthetic process | 1.31E-02 |
| 90 | GO:0000302: response to reactive oxygen species | 1.37E-02 |
| 91 | GO:0032502: developmental process | 1.44E-02 |
| 92 | GO:0071805: potassium ion transmembrane transport | 1.64E-02 |
| 93 | GO:0015995: chlorophyll biosynthetic process | 2.00E-02 |
| 94 | GO:0016311: dephosphorylation | 2.08E-02 |
| 95 | GO:0018298: protein-chromophore linkage | 2.16E-02 |
| 96 | GO:0009817: defense response to fungus, incompatible interaction | 2.16E-02 |
| 97 | GO:0009407: toxin catabolic process | 2.31E-02 |
| 98 | GO:0009631: cold acclimation | 2.39E-02 |
| 99 | GO:0009637: response to blue light | 2.55E-02 |
| 100 | GO:0010114: response to red light | 3.06E-02 |
| 101 | GO:0032259: methylation | 3.25E-02 |
| 102 | GO:0009636: response to toxic substance | 3.32E-02 |
| 103 | GO:0042538: hyperosmotic salinity response | 3.59E-02 |
| 104 | GO:0008152: metabolic process | 3.74E-02 |
| 105 | GO:0006364: rRNA processing | 3.78E-02 |
| 106 | GO:0006813: potassium ion transport | 3.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 4 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 7 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 8 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 9 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 10 | GO:0019843: rRNA binding | 8.88E-15 |
| 11 | GO:0003735: structural constituent of ribosome | 4.89E-09 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.88E-08 |
| 13 | GO:0043023: ribosomal large subunit binding | 8.48E-06 |
| 14 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.40E-04 |
| 15 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.40E-04 |
| 16 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.40E-04 |
| 17 | GO:0042586: peptide deformylase activity | 1.40E-04 |
| 18 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.40E-04 |
| 19 | GO:0004321: fatty-acyl-CoA synthase activity | 1.40E-04 |
| 20 | GO:0005080: protein kinase C binding | 1.40E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.20E-04 |
| 22 | GO:0004565: beta-galactosidase activity | 3.21E-04 |
| 23 | GO:0005528: FK506 binding | 5.03E-04 |
| 24 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 5.26E-04 |
| 25 | GO:0004176: ATP-dependent peptidase activity | 6.07E-04 |
| 26 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 7.53E-04 |
| 27 | GO:0004659: prenyltransferase activity | 9.98E-04 |
| 28 | GO:0001053: plastid sigma factor activity | 9.98E-04 |
| 29 | GO:0004845: uracil phosphoribosyltransferase activity | 9.98E-04 |
| 30 | GO:0016836: hydro-lyase activity | 9.98E-04 |
| 31 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.98E-04 |
| 32 | GO:0004045: aminoacyl-tRNA hydrolase activity | 9.98E-04 |
| 33 | GO:0016987: sigma factor activity | 9.98E-04 |
| 34 | GO:0043495: protein anchor | 9.98E-04 |
| 35 | GO:0009922: fatty acid elongase activity | 1.26E-03 |
| 36 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.26E-03 |
| 37 | GO:0004040: amidase activity | 1.26E-03 |
| 38 | GO:0008237: metallopeptidase activity | 1.53E-03 |
| 39 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.55E-03 |
| 40 | GO:0004130: cytochrome-c peroxidase activity | 1.55E-03 |
| 41 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.55E-03 |
| 42 | GO:0016688: L-ascorbate peroxidase activity | 1.55E-03 |
| 43 | GO:0051920: peroxiredoxin activity | 1.86E-03 |
| 44 | GO:0004849: uridine kinase activity | 1.86E-03 |
| 45 | GO:0004620: phospholipase activity | 2.18E-03 |
| 46 | GO:0019899: enzyme binding | 2.18E-03 |
| 47 | GO:0016209: antioxidant activity | 2.52E-03 |
| 48 | GO:0008312: 7S RNA binding | 2.52E-03 |
| 49 | GO:0004033: aldo-keto reductase (NADP) activity | 2.52E-03 |
| 50 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.26E-03 |
| 51 | GO:0016207: 4-coumarate-CoA ligase activity | 3.26E-03 |
| 52 | GO:0008047: enzyme activator activity | 4.06E-03 |
| 53 | GO:0047372: acylglycerol lipase activity | 4.48E-03 |
| 54 | GO:0031072: heat shock protein binding | 5.37E-03 |
| 55 | GO:0008266: poly(U) RNA binding | 5.84E-03 |
| 56 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 6.30E-03 |
| 57 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 6.30E-03 |
| 58 | GO:0005525: GTP binding | 6.84E-03 |
| 59 | GO:0003924: GTPase activity | 6.93E-03 |
| 60 | GO:0051536: iron-sulfur cluster binding | 7.32E-03 |
| 61 | GO:0043424: protein histidine kinase binding | 7.84E-03 |
| 62 | GO:0015079: potassium ion transmembrane transporter activity | 7.84E-03 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 9.48E-03 |
| 64 | GO:0008810: cellulase activity | 9.48E-03 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.06E-02 |
| 66 | GO:0008289: lipid binding | 1.06E-02 |
| 67 | GO:0004791: thioredoxin-disulfide reductase activity | 1.25E-02 |
| 68 | GO:0008194: UDP-glycosyltransferase activity | 1.34E-02 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.51E-02 |
| 70 | GO:0042802: identical protein binding | 1.52E-02 |
| 71 | GO:0008168: methyltransferase activity | 1.78E-02 |
| 72 | GO:0000287: magnesium ion binding | 1.82E-02 |
| 73 | GO:0004601: peroxidase activity | 1.85E-02 |
| 74 | GO:0016168: chlorophyll binding | 1.86E-02 |
| 75 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.08E-02 |
| 76 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.16E-02 |
| 77 | GO:0003993: acid phosphatase activity | 2.63E-02 |
| 78 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.80E-02 |
| 79 | GO:0042803: protein homodimerization activity | 2.88E-02 |
| 80 | GO:0004364: glutathione transferase activity | 2.97E-02 |
| 81 | GO:0005509: calcium ion binding | 3.15E-02 |
| 82 | GO:0043621: protein self-association | 3.23E-02 |
| 83 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.78E-02 |
| 84 | GO:0003777: microtubule motor activity | 4.06E-02 |
| 85 | GO:0016874: ligase activity | 4.65E-02 |
| 86 | GO:0051082: unfolded protein binding | 4.85E-02 |
| 87 | GO:0016491: oxidoreductase activity | 4.87E-02 |
| 88 | GO:0015035: protein disulfide oxidoreductase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.97E-44 |
| 4 | GO:0009570: chloroplast stroma | 1.04E-27 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.36E-22 |
| 6 | GO:0009941: chloroplast envelope | 1.51E-19 |
| 7 | GO:0009579: thylakoid | 2.37E-16 |
| 8 | GO:0009534: chloroplast thylakoid | 6.40E-15 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 8.88E-15 |
| 10 | GO:0031977: thylakoid lumen | 1.12E-11 |
| 11 | GO:0005840: ribosome | 1.03E-10 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 2.41E-05 |
| 13 | GO:0009536: plastid | 3.67E-05 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 7.34E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 7.76E-05 |
| 16 | GO:0009923: fatty acid elongase complex | 1.40E-04 |
| 17 | GO:0009547: plastid ribosome | 1.40E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 3.20E-04 |
| 19 | GO:0000312: plastid small ribosomal subunit | 3.63E-04 |
| 20 | GO:0009528: plastid inner membrane | 5.26E-04 |
| 21 | GO:0009706: chloroplast inner membrane | 9.38E-04 |
| 22 | GO:0009527: plastid outer membrane | 9.98E-04 |
| 23 | GO:0009707: chloroplast outer membrane | 2.22E-03 |
| 24 | GO:0016020: membrane | 2.63E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.88E-03 |
| 26 | GO:0005763: mitochondrial small ribosomal subunit | 3.26E-03 |
| 27 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.26E-03 |
| 28 | GO:0000311: plastid large ribosomal subunit | 4.92E-03 |
| 29 | GO:0030095: chloroplast photosystem II | 5.84E-03 |
| 30 | GO:0042651: thylakoid membrane | 7.84E-03 |
| 31 | GO:0015935: small ribosomal subunit | 8.38E-03 |
| 32 | GO:0009532: plastid stroma | 8.38E-03 |
| 33 | GO:0005871: kinesin complex | 1.06E-02 |
| 34 | GO:0009523: photosystem II | 1.31E-02 |
| 35 | GO:0022626: cytosolic ribosome | 1.36E-02 |
| 36 | GO:0046658: anchored component of plasma membrane | 1.58E-02 |
| 37 | GO:0022627: cytosolic small ribosomal subunit | 1.58E-02 |
| 38 | GO:0010319: stromule | 1.64E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 1.79E-02 |
| 40 | GO:0031969: chloroplast membrane | 2.30E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.39E-02 |
| 42 | GO:0022625: cytosolic large ribosomal subunit | 2.42E-02 |
| 43 | GO:0031225: anchored component of membrane | 2.52E-02 |
| 44 | GO:0005856: cytoskeleton | 3.32E-02 |
| 45 | GO:0043231: intracellular membrane-bounded organelle | 3.74E-02 |