co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G24190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010335: response to non-ionic osmotic stress	0.00E+00
2	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
3	GO:0090393: sepal giant cell development	0.00E+00
4	GO:0036172: thiamine salvage	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0006982: response to lipid hydroperoxide	0.00E+00
7	GO:0042823: pyridoxal phosphate biosynthetic process	1.23E-06
8	GO:0019464: glycine decarboxylation via glycine cleavage system	2.38E-06
9	GO:0006546: glycine catabolic process	2.38E-06
10	GO:0009637: response to blue light	3.45E-05
11	GO:1902265: abscisic acid homeostasis	4.60E-05
12	GO:0006659: phosphatidylserine biosynthetic process	4.60E-05
13	GO:0080093: regulation of photorespiration	4.60E-05
14	GO:0031998: regulation of fatty acid beta-oxidation	4.60E-05
15	GO:0042819: vitamin B6 biosynthetic process	1.13E-04
16	GO:0031022: nuclear migration along microfilament	1.95E-04
17	GO:0044375: regulation of peroxisome size	1.95E-04
18	GO:0005977: glycogen metabolic process	1.95E-04
19	GO:0006011: UDP-glucose metabolic process	1.95E-04
20	GO:0010148: transpiration	2.85E-04
21	GO:0008615: pyridoxine biosynthetic process	2.85E-04
22	GO:0032877: positive regulation of DNA endoreduplication	2.85E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.85E-04
24	GO:0015994: chlorophyll metabolic process	3.84E-04
25	GO:0006021: inositol biosynthetic process	3.84E-04
26	GO:0009902: chloroplast relocation	3.84E-04
27	GO:0051781: positive regulation of cell division	3.84E-04
28	GO:0048442: sepal development	3.84E-04
29	GO:0016120: carotene biosynthetic process	4.88E-04
30	GO:0043097: pyrimidine nucleoside salvage	4.88E-04
31	GO:0010236: plastoquinone biosynthetic process	4.88E-04
32	GO:0006097: glyoxylate cycle	4.88E-04
33	GO:0009229: thiamine diphosphate biosynthetic process	4.88E-04
34	GO:0006206: pyrimidine nucleobase metabolic process	5.98E-04
35	GO:0009228: thiamine biosynthetic process	5.98E-04
36	GO:0010190: cytochrome b6f complex assembly	5.98E-04
37	GO:0010942: positive regulation of cell death	5.98E-04
38	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	5.98E-04
39	GO:0080167: response to karrikin	6.60E-04
40	GO:0010076: maintenance of floral meristem identity	7.13E-04
41	GO:0009903: chloroplast avoidance movement	7.13E-04
42	GO:0009854: oxidative photosynthetic carbon pathway	7.13E-04
43	GO:0048564: photosystem I assembly	9.57E-04
44	GO:0009787: regulation of abscisic acid-activated signaling pathway	9.57E-04
45	GO:0052543: callose deposition in cell wall	9.57E-04
46	GO:0016559: peroxisome fission	9.57E-04
47	GO:0071482: cellular response to light stimulus	1.09E-03
48	GO:0010224: response to UV-B	1.18E-03
49	GO:0009056: catabolic process	1.22E-03
50	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.36E-03
51	GO:0048441: petal development	1.51E-03
52	GO:0018119: peptidyl-cysteine S-nitrosylation	1.66E-03
53	GO:0016485: protein processing	1.66E-03
54	GO:0071365: cellular response to auxin stimulus	1.81E-03
55	GO:0030048: actin filament-based movement	1.98E-03
56	GO:0006108: malate metabolic process	1.98E-03
57	GO:0048440: carpel development	2.14E-03
58	GO:0019253: reductive pentose-phosphate cycle	2.14E-03
59	GO:0010223: secondary shoot formation	2.14E-03
60	GO:0007031: peroxisome organization	2.31E-03
61	GO:0042343: indole glucosinolate metabolic process	2.31E-03
62	GO:0006636: unsaturated fatty acid biosynthetic process	2.49E-03
63	GO:0008299: isoprenoid biosynthetic process	2.85E-03
64	GO:0009768: photosynthesis, light harvesting in photosystem I	2.85E-03
65	GO:0006366: transcription from RNA polymerase II promoter	3.04E-03
66	GO:0098542: defense response to other organism	3.04E-03
67	GO:0055114: oxidation-reduction process	3.08E-03
68	GO:0006730: one-carbon metabolic process	3.23E-03
69	GO:0016226: iron-sulfur cluster assembly	3.23E-03
70	GO:0030433: ubiquitin-dependent ERAD pathway	3.23E-03
71	GO:0009411: response to UV	3.43E-03
72	GO:0048443: stamen development	3.63E-03
73	GO:0016117: carotenoid biosynthetic process	3.83E-03
74	GO:0042631: cellular response to water deprivation	4.04E-03
75	GO:0042335: cuticle development	4.04E-03
76	GO:0009658: chloroplast organization	4.21E-03
77	GO:0006520: cellular amino acid metabolic process	4.25E-03
78	GO:0009646: response to absence of light	4.47E-03
79	GO:0009791: post-embryonic development	4.68E-03
80	GO:0008654: phospholipid biosynthetic process	4.68E-03
81	GO:0030163: protein catabolic process	5.37E-03
82	GO:0015979: photosynthesis	5.94E-03
83	GO:0010029: regulation of seed germination	6.57E-03
84	GO:0048573: photoperiodism, flowering	7.08E-03
85	GO:0018298: protein-chromophore linkage	7.60E-03
86	GO:0009813: flavonoid biosynthetic process	7.87E-03
87	GO:0010311: lateral root formation	7.87E-03
88	GO:0010218: response to far red light	8.14E-03
89	GO:0010119: regulation of stomatal movement	8.41E-03
90	GO:0009853: photorespiration	8.96E-03
91	GO:0016051: carbohydrate biosynthetic process	8.96E-03
92	GO:0005975: carbohydrate metabolic process	9.04E-03
93	GO:0006099: tricarboxylic acid cycle	9.25E-03
94	GO:0046686: response to cadmium ion	9.34E-03
95	GO:0000209: protein polyubiquitination	1.10E-02
96	GO:0042546: cell wall biogenesis	1.10E-02
97	GO:0000165: MAPK cascade	1.23E-02
98	GO:0009735: response to cytokinin	1.25E-02
99	GO:0042538: hyperosmotic salinity response	1.26E-02
100	GO:0009585: red, far-red light phototransduction	1.32E-02
101	GO:0006857: oligopeptide transport	1.39E-02
102	GO:0006417: regulation of translation	1.42E-02
103	GO:0009058: biosynthetic process	2.07E-02
104	GO:0006633: fatty acid biosynthetic process	2.34E-02
105	GO:0006413: translational initiation	2.38E-02
106	GO:0010150: leaf senescence	2.50E-02
107	GO:0042742: defense response to bacterium	2.77E-02
108	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.23E-02
109	GO:0006970: response to osmotic stress	3.60E-02
110	GO:0007049: cell cycle	3.69E-02
111	GO:0009409: response to cold	3.75E-02
112	GO:0009723: response to ethylene	3.79E-02
113	GO:0006810: transport	4.06E-02
114	GO:0044550: secondary metabolite biosynthetic process	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
4	GO:0008465: glycerate dehydrogenase activity	0.00E+00
5	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
6	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
7	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
8	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.23E-06
9	GO:0050347: trans-octaprenyltranstransferase activity	1.13E-04
10	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.13E-04
11	GO:0004512: inositol-3-phosphate synthase activity	1.13E-04
12	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	1.13E-04
13	GO:0032947: protein complex scaffold	1.95E-04
14	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.95E-04
15	GO:0048038: quinone binding	2.87E-04
16	GO:0045430: chalcone isomerase activity	3.84E-04
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.84E-04
18	GO:0000210: NAD+ diphosphatase activity	5.98E-04
19	GO:0016615: malate dehydrogenase activity	5.98E-04
20	GO:2001070: starch binding	5.98E-04
21	GO:0030060: L-malate dehydrogenase activity	7.13E-04
22	GO:0004849: uridine kinase activity	7.13E-04
23	GO:0043022: ribosome binding	9.57E-04
24	GO:0004860: protein kinase inhibitor activity	1.66E-03
25	GO:0015198: oligopeptide transporter activity	1.81E-03
26	GO:0005515: protein binding	1.97E-03
27	GO:0004089: carbonate dehydratase activity	1.98E-03
28	GO:0008266: poly(U) RNA binding	2.14E-03
29	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.49E-03
30	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.49E-03
31	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.49E-03
32	GO:0031409: pigment binding	2.49E-03
33	GO:0001046: core promoter sequence-specific DNA binding	2.67E-03
34	GO:0051536: iron-sulfur cluster binding	2.67E-03
35	GO:0042802: identical protein binding	3.47E-03
36	GO:0046982: protein heterodimerization activity	4.13E-03
37	GO:0008080: N-acetyltransferase activity	4.25E-03
38	GO:0003824: catalytic activity	5.99E-03
39	GO:0016168: chlorophyll binding	6.57E-03
40	GO:0008375: acetylglucosaminyltransferase activity	6.82E-03
41	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	8.41E-03
42	GO:0005198: structural molecule activity	1.16E-02
43	GO:0051287: NAD binding	1.23E-02
44	GO:0016787: hydrolase activity	1.40E-02
45	GO:0031625: ubiquitin protein ligase binding	1.42E-02
46	GO:0022857: transmembrane transporter activity	1.63E-02
47	GO:0016746: transferase activity, transferring acyl groups	1.73E-02
48	GO:0004252: serine-type endopeptidase activity	2.14E-02
49	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.18E-02
50	GO:0005506: iron ion binding	2.73E-02
51	GO:0003743: translation initiation factor activity	2.80E-02
52	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.97E-02
53	GO:0016491: oxidoreductase activity	3.65E-02
54	GO:0046983: protein dimerization activity	3.70E-02
55	GO:0008233: peptidase activity	3.93E-02
56	GO:0061630: ubiquitin protein ligase activity	4.13E-02
57	GO:0052689: carboxylic ester hydrolase activity	4.27E-02
58	GO:0004871: signal transducer activity	4.68E-02
59	GO:0042803: protein homodimerization activity	4.68E-02
60	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	6.03E-08
3	GO:0005960: glycine cleavage complex	1.23E-06
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.71E-05
5	GO:0009570: chloroplast stroma	5.77E-05
6	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.95E-04
7	GO:0009509: chromoplast	1.95E-04
8	GO:0048046: apoplast	3.73E-04
9	GO:0009941: chloroplast envelope	6.30E-04
10	GO:0009535: chloroplast thylakoid membrane	7.06E-04
11	GO:0005779: integral component of peroxisomal membrane	1.09E-03
12	GO:0019013: viral nucleocapsid	1.98E-03
13	GO:0030076: light-harvesting complex	2.31E-03
14	GO:0005777: peroxisome	2.60E-03
15	GO:0009532: plastid stroma	3.04E-03
16	GO:0009522: photosystem I	4.47E-03
17	GO:0009523: photosystem II	4.68E-03
18	GO:0005783: endoplasmic reticulum	5.14E-03
19	GO:0005778: peroxisomal membrane	5.84E-03
20	GO:0010319: stromule	5.84E-03
21	GO:0019005: SCF ubiquitin ligase complex	7.60E-03
22	GO:0005834: heterotrimeric G-protein complex	1.56E-02
23	GO:0012505: endomembrane system	1.66E-02
24	GO:0010287: plastoglobule	1.92E-02
25	GO:0005623: cell	2.03E-02
26	GO:0009705: plant-type vacuole membrane	2.50E-02
27	GO:0005774: vacuolar membrane	2.57E-02
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.65E-02
29	GO:0031969: chloroplast membrane	3.98E-02
30	GO:0005773: vacuole	4.35E-02