GO Enrichment Analysis of Co-expressed Genes with
AT3G23990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043462: regulation of ATPase activity | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0006457: protein folding | 6.29E-07 |
| 4 | GO:0006334: nucleosome assembly | 7.30E-07 |
| 5 | GO:0016444: somatic cell DNA recombination | 3.94E-06 |
| 6 | GO:0046686: response to cadmium ion | 8.68E-06 |
| 7 | GO:0090332: stomatal closure | 1.51E-05 |
| 8 | GO:0051555: flavonol biosynthetic process | 1.85E-05 |
| 9 | GO:1990258: histone glutamine methylation | 2.76E-05 |
| 10 | GO:0000494: box C/D snoRNA 3'-end processing | 2.76E-05 |
| 11 | GO:0009408: response to heat | 3.79E-05 |
| 12 | GO:0010187: negative regulation of seed germination | 5.28E-05 |
| 13 | GO:0061077: chaperone-mediated protein folding | 6.61E-05 |
| 14 | GO:0045041: protein import into mitochondrial intermembrane space | 7.01E-05 |
| 15 | GO:1905182: positive regulation of urease activity | 7.01E-05 |
| 16 | GO:0007005: mitochondrion organization | 7.33E-05 |
| 17 | GO:0009294: DNA mediated transformation | 8.11E-05 |
| 18 | GO:0006954: inflammatory response | 1.23E-04 |
| 19 | GO:0010253: UDP-rhamnose biosynthetic process | 1.23E-04 |
| 20 | GO:0006165: nucleoside diphosphate phosphorylation | 1.83E-04 |
| 21 | GO:0006228: UTP biosynthetic process | 1.83E-04 |
| 22 | GO:0006164: purine nucleotide biosynthetic process | 1.83E-04 |
| 23 | GO:0051131: chaperone-mediated protein complex assembly | 1.83E-04 |
| 24 | GO:0051289: protein homotetramerization | 1.83E-04 |
| 25 | GO:0006986: response to unfolded protein | 1.83E-04 |
| 26 | GO:0070301: cellular response to hydrogen peroxide | 1.83E-04 |
| 27 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.83E-04 |
| 28 | GO:0006241: CTP biosynthetic process | 1.83E-04 |
| 29 | GO:0000956: nuclear-transcribed mRNA catabolic process | 2.48E-04 |
| 30 | GO:0044205: 'de novo' UMP biosynthetic process | 2.48E-04 |
| 31 | GO:0006183: GTP biosynthetic process | 2.48E-04 |
| 32 | GO:0031167: rRNA methylation | 3.18E-04 |
| 33 | GO:0000724: double-strand break repair via homologous recombination | 3.44E-04 |
| 34 | GO:0000741: karyogamy | 3.92E-04 |
| 35 | GO:0010315: auxin efflux | 3.92E-04 |
| 36 | GO:0009651: response to salt stress | 4.41E-04 |
| 37 | GO:0042026: protein refolding | 4.69E-04 |
| 38 | GO:0042372: phylloquinone biosynthetic process | 4.69E-04 |
| 39 | GO:0006458: 'de novo' protein folding | 4.69E-04 |
| 40 | GO:0006268: DNA unwinding involved in DNA replication | 4.69E-04 |
| 41 | GO:0009396: folic acid-containing compound biosynthetic process | 5.49E-04 |
| 42 | GO:0000028: ribosomal small subunit assembly | 6.32E-04 |
| 43 | GO:0050821: protein stabilization | 6.32E-04 |
| 44 | GO:0001510: RNA methylation | 7.18E-04 |
| 45 | GO:0006526: arginine biosynthetic process | 7.18E-04 |
| 46 | GO:0006189: 'de novo' IMP biosynthetic process | 8.07E-04 |
| 47 | GO:0098656: anion transmembrane transport | 8.07E-04 |
| 48 | GO:0000387: spliceosomal snRNP assembly | 8.99E-04 |
| 49 | GO:0035999: tetrahydrofolate interconversion | 8.99E-04 |
| 50 | GO:0006412: translation | 9.57E-04 |
| 51 | GO:0000398: mRNA splicing, via spliceosome | 9.88E-04 |
| 52 | GO:0010162: seed dormancy process | 9.92E-04 |
| 53 | GO:0006265: DNA topological change | 1.09E-03 |
| 54 | GO:0043085: positive regulation of catalytic activity | 1.09E-03 |
| 55 | GO:0006820: anion transport | 1.19E-03 |
| 56 | GO:0006807: nitrogen compound metabolic process | 1.29E-03 |
| 57 | GO:0006626: protein targeting to mitochondrion | 1.29E-03 |
| 58 | GO:0009225: nucleotide-sugar metabolic process | 1.50E-03 |
| 59 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.73E-03 |
| 60 | GO:0098542: defense response to other organism | 1.97E-03 |
| 61 | GO:0009414: response to water deprivation | 2.26E-03 |
| 62 | GO:0042127: regulation of cell proliferation | 2.35E-03 |
| 63 | GO:0008033: tRNA processing | 2.61E-03 |
| 64 | GO:0000413: protein peptidyl-prolyl isomerization | 2.61E-03 |
| 65 | GO:0010118: stomatal movement | 2.61E-03 |
| 66 | GO:0010197: polar nucleus fusion | 2.74E-03 |
| 67 | GO:0010286: heat acclimation | 3.75E-03 |
| 68 | GO:0009911: positive regulation of flower development | 4.06E-03 |
| 69 | GO:0009615: response to virus | 4.06E-03 |
| 70 | GO:0009816: defense response to bacterium, incompatible interaction | 4.22E-03 |
| 71 | GO:0006888: ER to Golgi vesicle-mediated transport | 4.54E-03 |
| 72 | GO:0048573: photoperiodism, flowering | 4.54E-03 |
| 73 | GO:0016049: cell growth | 4.70E-03 |
| 74 | GO:0010311: lateral root formation | 5.04E-03 |
| 75 | GO:0048527: lateral root development | 5.38E-03 |
| 76 | GO:0009853: photorespiration | 5.73E-03 |
| 77 | GO:0009735: response to cytokinin | 6.51E-03 |
| 78 | GO:0008283: cell proliferation | 6.82E-03 |
| 79 | GO:0051707: response to other organism | 6.82E-03 |
| 80 | GO:0006855: drug transmembrane transport | 7.59E-03 |
| 81 | GO:0006364: rRNA processing | 8.40E-03 |
| 82 | GO:0016569: covalent chromatin modification | 1.03E-02 |
| 83 | GO:0006414: translational elongation | 1.06E-02 |
| 84 | GO:0009624: response to nematode | 1.07E-02 |
| 85 | GO:0016036: cellular response to phosphate starvation | 1.51E-02 |
| 86 | GO:0030154: cell differentiation | 1.58E-02 |
| 87 | GO:0009617: response to bacterium | 1.79E-02 |
| 88 | GO:0015031: protein transport | 1.84E-02 |
| 89 | GO:0042254: ribosome biogenesis | 2.19E-02 |
| 90 | GO:0009860: pollen tube growth | 2.27E-02 |
| 91 | GO:0009723: response to ethylene | 2.39E-02 |
| 92 | GO:0048366: leaf development | 2.42E-02 |
| 93 | GO:0006281: DNA repair | 3.32E-02 |
| 94 | GO:0009793: embryo development ending in seed dormancy | 3.35E-02 |
| 95 | GO:0048364: root development | 3.42E-02 |
| 96 | GO:0008152: metabolic process | 3.56E-02 |
| 97 | GO:0009908: flower development | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0051082: unfolded protein binding | 2.26E-08 |
| 3 | GO:0042393: histone binding | 1.49E-05 |
| 4 | GO:0003735: structural constituent of ribosome | 1.71E-05 |
| 5 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 2.76E-05 |
| 6 | GO:1990259: histone-glutamine methyltransferase activity | 2.76E-05 |
| 7 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 7.01E-05 |
| 8 | GO:0008517: folic acid transporter activity | 7.01E-05 |
| 9 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 7.01E-05 |
| 10 | GO:0010280: UDP-L-rhamnose synthase activity | 7.01E-05 |
| 11 | GO:0008649: rRNA methyltransferase activity | 1.23E-04 |
| 12 | GO:0070180: large ribosomal subunit rRNA binding | 1.23E-04 |
| 13 | GO:0016151: nickel cation binding | 1.23E-04 |
| 14 | GO:0004550: nucleoside diphosphate kinase activity | 1.83E-04 |
| 15 | GO:0005524: ATP binding | 2.38E-04 |
| 16 | GO:0003917: DNA topoisomerase type I activity | 2.48E-04 |
| 17 | GO:0002020: protease binding | 3.18E-04 |
| 18 | GO:0003746: translation elongation factor activity | 3.60E-04 |
| 19 | GO:0003924: GTPase activity | 4.74E-04 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.37E-04 |
| 21 | GO:0030515: snoRNA binding | 5.49E-04 |
| 22 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 6.32E-04 |
| 23 | GO:0015288: porin activity | 6.32E-04 |
| 24 | GO:0003729: mRNA binding | 6.58E-04 |
| 25 | GO:0008308: voltage-gated anion channel activity | 7.18E-04 |
| 26 | GO:0047617: acyl-CoA hydrolase activity | 8.99E-04 |
| 27 | GO:0008559: xenobiotic-transporting ATPase activity | 1.09E-03 |
| 28 | GO:0044183: protein binding involved in protein folding | 1.09E-03 |
| 29 | GO:0031072: heat shock protein binding | 1.29E-03 |
| 30 | GO:0005507: copper ion binding | 1.49E-03 |
| 31 | GO:0004407: histone deacetylase activity | 1.73E-03 |
| 32 | GO:0005528: FK506 binding | 1.73E-03 |
| 33 | GO:0005525: GTP binding | 1.79E-03 |
| 34 | GO:0051087: chaperone binding | 1.85E-03 |
| 35 | GO:0035251: UDP-glucosyltransferase activity | 1.97E-03 |
| 36 | GO:0016853: isomerase activity | 2.88E-03 |
| 37 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.87E-03 |
| 38 | GO:0050897: cobalt ion binding | 5.38E-03 |
| 39 | GO:0046872: metal ion binding | 9.39E-03 |
| 40 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.01E-02 |
| 41 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.01E-02 |
| 42 | GO:0016758: transferase activity, transferring hexosyl groups | 1.24E-02 |
| 43 | GO:0019843: rRNA binding | 1.26E-02 |
| 44 | GO:0003824: catalytic activity | 1.59E-02 |
| 45 | GO:0008194: UDP-glycosyltransferase activity | 1.71E-02 |
| 46 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.88E-02 |
| 47 | GO:0042802: identical protein binding | 1.88E-02 |
| 48 | GO:0016788: hydrolase activity, acting on ester bonds | 2.19E-02 |
| 49 | GO:0003682: chromatin binding | 2.24E-02 |
| 50 | GO:0016787: hydrolase activity | 3.10E-02 |
| 51 | GO:0003723: RNA binding | 3.12E-02 |
| 52 | GO:0016887: ATPase activity | 4.53E-02 |
| 53 | GO:0000166: nucleotide binding | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005774: vacuolar membrane | 3.19E-08 |
| 3 | GO:0005730: nucleolus | 6.83E-07 |
| 4 | GO:0005829: cytosol | 1.30E-05 |
| 5 | GO:0005951: carbamoyl-phosphate synthase complex | 2.76E-05 |
| 6 | GO:0005747: mitochondrial respiratory chain complex I | 4.06E-05 |
| 7 | GO:0005739: mitochondrion | 5.15E-05 |
| 8 | GO:0009506: plasmodesma | 5.94E-05 |
| 9 | GO:0034719: SMN-Sm protein complex | 1.23E-04 |
| 10 | GO:1990726: Lsm1-7-Pat1 complex | 1.83E-04 |
| 11 | GO:0005682: U5 snRNP | 2.48E-04 |
| 12 | GO:0005687: U4 snRNP | 3.18E-04 |
| 13 | GO:0097526: spliceosomal tri-snRNP complex | 3.18E-04 |
| 14 | GO:0031428: box C/D snoRNP complex | 3.92E-04 |
| 15 | GO:0009507: chloroplast | 4.30E-04 |
| 16 | GO:0005762: mitochondrial large ribosomal subunit | 4.69E-04 |
| 17 | GO:0005689: U12-type spliceosomal complex | 4.69E-04 |
| 18 | GO:0005618: cell wall | 5.94E-04 |
| 19 | GO:0071004: U2-type prespliceosome | 6.32E-04 |
| 20 | GO:0005688: U6 snRNP | 6.32E-04 |
| 21 | GO:0046930: pore complex | 7.18E-04 |
| 22 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 7.18E-04 |
| 23 | GO:0005681: spliceosomal complex | 7.24E-04 |
| 24 | GO:0005763: mitochondrial small ribosomal subunit | 8.07E-04 |
| 25 | GO:0005685: U1 snRNP | 8.07E-04 |
| 26 | GO:0071011: precatalytic spliceosome | 8.99E-04 |
| 27 | GO:0015030: Cajal body | 8.99E-04 |
| 28 | GO:0005732: small nucleolar ribonucleoprotein complex | 9.37E-04 |
| 29 | GO:0005773: vacuole | 9.88E-04 |
| 30 | GO:0005686: U2 snRNP | 9.92E-04 |
| 31 | GO:0071013: catalytic step 2 spliceosome | 1.09E-03 |
| 32 | GO:0032040: small-subunit processome | 1.19E-03 |
| 33 | GO:0019013: viral nucleocapsid | 1.29E-03 |
| 34 | GO:0005759: mitochondrial matrix | 1.32E-03 |
| 35 | GO:0005758: mitochondrial intermembrane space | 1.73E-03 |
| 36 | GO:0005741: mitochondrial outer membrane | 1.97E-03 |
| 37 | GO:0005840: ribosome | 2.47E-03 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 2.88E-03 |
| 39 | GO:0005886: plasma membrane | 3.66E-03 |
| 40 | GO:0000325: plant-type vacuole | 5.38E-03 |
| 41 | GO:0015934: large ribosomal subunit | 5.38E-03 |
| 42 | GO:0016020: membrane | 6.73E-03 |
| 43 | GO:0022626: cytosolic ribosome | 6.81E-03 |
| 44 | GO:0005777: peroxisome | 8.17E-03 |
| 45 | GO:0005737: cytoplasm | 1.85E-02 |
| 46 | GO:0009570: chloroplast stroma | 2.51E-02 |
| 47 | GO:0005794: Golgi apparatus | 2.78E-02 |
| 48 | GO:0005743: mitochondrial inner membrane | 3.15E-02 |
| 49 | GO:0043231: intracellular membrane-bounded organelle | 3.56E-02 |