Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044154: histone H3-K14 acetylation0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0043972: histone H3-K23 acetylation0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I5.43E-11
9GO:0030388: fructose 1,6-bisphosphate metabolic process3.41E-06
10GO:0032544: plastid translation8.96E-06
11GO:0006000: fructose metabolic process1.22E-05
12GO:0015979: photosynthesis2.40E-05
13GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.76E-05
14GO:0010027: thylakoid membrane organization4.40E-05
15GO:0045727: positive regulation of translation4.98E-05
16GO:0006546: glycine catabolic process4.98E-05
17GO:0010207: photosystem II assembly5.34E-05
18GO:0018298: protein-chromophore linkage7.32E-05
19GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.15E-04
20GO:0010196: nonphotochemical quenching2.07E-04
21GO:0008610: lipid biosynthetic process2.62E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.72E-04
23GO:0070509: calcium ion import2.72E-04
24GO:0007263: nitric oxide mediated signal transduction2.72E-04
25GO:0043971: histone H3-K18 acetylation2.72E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.72E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.72E-04
28GO:0043087: regulation of GTPase activity2.72E-04
29GO:1902458: positive regulation of stomatal opening2.72E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway2.72E-04
31GO:0006002: fructose 6-phosphate metabolic process3.23E-04
32GO:0009657: plastid organization3.23E-04
33GO:0009658: chloroplast organization4.66E-04
34GO:0045036: protein targeting to chloroplast5.39E-04
35GO:1902326: positive regulation of chlorophyll biosynthetic process5.99E-04
36GO:0080183: response to photooxidative stress5.99E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process5.99E-04
38GO:0010275: NAD(P)H dehydrogenase complex assembly5.99E-04
39GO:0006415: translational termination6.22E-04
40GO:0018119: peptidyl-cysteine S-nitrosylation6.22E-04
41GO:0055114: oxidation-reduction process7.09E-04
42GO:0006094: gluconeogenesis8.06E-04
43GO:0009767: photosynthetic electron transport chain8.06E-04
44GO:0005986: sucrose biosynthetic process8.06E-04
45GO:0009735: response to cytokinin8.14E-04
46GO:0019253: reductive pentose-phosphate cycle9.06E-04
47GO:0006518: peptide metabolic process9.72E-04
48GO:0009062: fatty acid catabolic process9.72E-04
49GO:0015675: nickel cation transport9.72E-04
50GO:0051604: protein maturation9.72E-04
51GO:0090506: axillary shoot meristem initiation9.72E-04
52GO:0009768: photosynthesis, light harvesting in photosystem I1.37E-03
53GO:0007017: microtubule-based process1.37E-03
54GO:1901332: negative regulation of lateral root development1.39E-03
55GO:0016556: mRNA modification1.39E-03
56GO:0043572: plastid fission1.39E-03
57GO:0019464: glycine decarboxylation via glycine cleavage system1.86E-03
58GO:0031122: cytoplasmic microtubule organization1.86E-03
59GO:0071483: cellular response to blue light1.86E-03
60GO:0042335: cuticle development2.27E-03
61GO:0009409: response to cold2.27E-03
62GO:0080110: sporopollenin biosynthetic process2.37E-03
63GO:0006564: L-serine biosynthetic process2.37E-03
64GO:0006656: phosphatidylcholine biosynthetic process2.37E-03
65GO:0045038: protein import into chloroplast thylakoid membrane2.37E-03
66GO:0006461: protein complex assembly2.37E-03
67GO:0006810: transport2.71E-03
68GO:0009913: epidermal cell differentiation2.93E-03
69GO:0010358: leaf shaping2.93E-03
70GO:0010190: cytochrome b6f complex assembly2.93E-03
71GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.93E-03
72GO:0048827: phyllome development2.93E-03
73GO:0042549: photosystem II stabilization2.93E-03
74GO:0046686: response to cadmium ion3.08E-03
75GO:0080167: response to karrikin3.16E-03
76GO:0010067: procambium histogenesis3.52E-03
77GO:0006458: 'de novo' protein folding3.52E-03
78GO:0042026: protein refolding3.52E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.52E-03
80GO:0009645: response to low light intensity stimulus4.15E-03
81GO:0006400: tRNA modification4.15E-03
82GO:0007155: cell adhesion4.82E-03
83GO:0048564: photosystem I assembly4.82E-03
84GO:2000070: regulation of response to water deprivation4.82E-03
85GO:0071482: cellular response to light stimulus5.52E-03
86GO:0015996: chlorophyll catabolic process5.52E-03
87GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.52E-03
88GO:0009827: plant-type cell wall modification5.52E-03
89GO:0007186: G-protein coupled receptor signaling pathway5.52E-03
90GO:0044030: regulation of DNA methylation5.52E-03
91GO:0017004: cytochrome complex assembly5.52E-03
92GO:0030244: cellulose biosynthetic process5.68E-03
93GO:0000373: Group II intron splicing6.25E-03
94GO:0000902: cell morphogenesis6.25E-03
95GO:1900865: chloroplast RNA modification7.03E-03
96GO:0019538: protein metabolic process7.82E-03
97GO:0000038: very long-chain fatty acid metabolic process8.66E-03
98GO:0006352: DNA-templated transcription, initiation8.66E-03
99GO:0000272: polysaccharide catabolic process8.66E-03
100GO:0045037: protein import into chloroplast stroma9.52E-03
101GO:0010102: lateral root morphogenesis1.04E-02
102GO:0010229: inflorescence development1.04E-02
103GO:0010020: chloroplast fission1.13E-02
104GO:0010223: secondary shoot formation1.13E-02
105GO:0010540: basipetal auxin transport1.13E-02
106GO:0080188: RNA-directed DNA methylation1.23E-02
107GO:0005985: sucrose metabolic process1.23E-02
108GO:0090351: seedling development1.23E-02
109GO:0009969: xyloglucan biosynthetic process1.23E-02
110GO:0006364: rRNA processing1.26E-02
111GO:0042742: defense response to bacterium1.27E-02
112GO:0071555: cell wall organization1.27E-02
113GO:0010025: wax biosynthetic process1.33E-02
114GO:0019762: glucosinolate catabolic process1.33E-02
115GO:0006096: glycolytic process1.49E-02
116GO:0006418: tRNA aminoacylation for protein translation1.53E-02
117GO:0009695: jasmonic acid biosynthetic process1.53E-02
118GO:0061077: chaperone-mediated protein folding1.64E-02
119GO:0031408: oxylipin biosynthetic process1.64E-02
120GO:0016226: iron-sulfur cluster assembly1.75E-02
121GO:0080092: regulation of pollen tube growth1.75E-02
122GO:0009294: DNA mediated transformation1.86E-02
123GO:0001944: vasculature development1.86E-02
124GO:0010584: pollen exine formation1.97E-02
125GO:0019722: calcium-mediated signaling1.97E-02
126GO:0010089: xylem development1.97E-02
127GO:0006869: lipid transport2.00E-02
128GO:0016117: carotenoid biosynthetic process2.09E-02
129GO:0032259: methylation2.20E-02
130GO:0042631: cellular response to water deprivation2.21E-02
131GO:0042391: regulation of membrane potential2.21E-02
132GO:0010087: phloem or xylem histogenesis2.21E-02
133GO:0008360: regulation of cell shape2.33E-02
134GO:0045489: pectin biosynthetic process2.33E-02
135GO:0010182: sugar mediated signaling pathway2.33E-02
136GO:0048868: pollen tube development2.33E-02
137GO:0009741: response to brassinosteroid2.33E-02
138GO:0010268: brassinosteroid homeostasis2.33E-02
139GO:0006814: sodium ion transport2.45E-02
140GO:0009753: response to jasmonic acid2.53E-02
141GO:0042744: hydrogen peroxide catabolic process2.56E-02
142GO:0009791: post-embryonic development2.58E-02
143GO:0048825: cotyledon development2.58E-02
144GO:0019252: starch biosynthetic process2.58E-02
145GO:0080156: mitochondrial mRNA modification2.71E-02
146GO:0000302: response to reactive oxygen species2.71E-02
147GO:0006635: fatty acid beta-oxidation2.71E-02
148GO:0016132: brassinosteroid biosynthetic process2.71E-02
149GO:0006633: fatty acid biosynthetic process2.82E-02
150GO:0007264: small GTPase mediated signal transduction2.84E-02
151GO:0016032: viral process2.84E-02
152GO:0010090: trichome morphogenesis2.97E-02
153GO:1901657: glycosyl compound metabolic process2.97E-02
154GO:0016125: sterol metabolic process3.10E-02
155GO:0007623: circadian rhythm3.10E-02
156GO:0010286: heat acclimation3.24E-02
157GO:0071805: potassium ion transmembrane transport3.24E-02
158GO:0007267: cell-cell signaling3.24E-02
159GO:0009911: positive regulation of flower development3.52E-02
160GO:0009816: defense response to bacterium, incompatible interaction3.66E-02
161GO:0015995: chlorophyll biosynthetic process3.95E-02
162GO:0048481: plant ovule development4.25E-02
163GO:0009817: defense response to fungus, incompatible interaction4.25E-02
164GO:0010311: lateral root formation4.40E-02
165GO:0000160: phosphorelay signal transduction system4.40E-02
166GO:0009834: plant-type secondary cell wall biogenesis4.55E-02
167GO:0009407: toxin catabolic process4.55E-02
168GO:0010218: response to far red light4.55E-02
169GO:0009826: unidimensional cell growth4.60E-02
170GO:0009631: cold acclimation4.71E-02
171GO:0009416: response to light stimulus4.72E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0051738: xanthophyll binding0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.41E-06
11GO:0004033: aldo-keto reductase (NADP) activity6.19E-06
12GO:0004148: dihydrolipoyl dehydrogenase activity1.22E-05
13GO:0016149: translation release factor activity, codon specific2.76E-05
14GO:0016168: chlorophyll binding4.91E-05
15GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity4.98E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.98E-05
17GO:0004222: metalloendopeptidase activity8.79E-05
18GO:0050662: coenzyme binding2.68E-04
19GO:0009496: plastoquinol--plastocyanin reductase activity2.72E-04
20GO:0008568: microtubule-severing ATPase activity2.72E-04
21GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.72E-04
22GO:0004321: fatty-acyl-CoA synthase activity2.72E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.72E-04
24GO:0030941: chloroplast targeting sequence binding2.72E-04
25GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.72E-04
26GO:0010012: steroid 22-alpha hydroxylase activity2.72E-04
27GO:0008809: carnitine racemase activity2.72E-04
28GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.72E-04
29GO:0003747: translation release factor activity3.90E-04
30GO:0008805: carbon-monoxide oxygenase activity5.99E-04
31GO:0004802: transketolase activity5.99E-04
32GO:0015099: nickel cation transmembrane transporter activity5.99E-04
33GO:0000234: phosphoethanolamine N-methyltransferase activity5.99E-04
34GO:0008967: phosphoglycolate phosphatase activity5.99E-04
35GO:0010297: heteropolysaccharide binding5.99E-04
36GO:0004617: phosphoglycerate dehydrogenase activity5.99E-04
37GO:0004047: aminomethyltransferase activity5.99E-04
38GO:0019843: rRNA binding7.24E-04
39GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.72E-04
40GO:0070330: aromatase activity9.72E-04
41GO:0003913: DNA photolyase activity9.72E-04
42GO:0002161: aminoacyl-tRNA editing activity9.72E-04
43GO:0030267: glyoxylate reductase (NADP) activity9.72E-04
44GO:0070402: NADPH binding9.72E-04
45GO:0031409: pigment binding1.12E-03
46GO:0015079: potassium ion transmembrane transporter activity1.37E-03
47GO:0004375: glycine dehydrogenase (decarboxylating) activity1.39E-03
48GO:0004165: dodecenoyl-CoA delta-isomerase activity1.39E-03
49GO:0008508: bile acid:sodium symporter activity1.39E-03
50GO:0003824: catalytic activity1.43E-03
51GO:0022891: substrate-specific transmembrane transporter activity1.79E-03
52GO:0016987: sigma factor activity1.86E-03
53GO:0010385: double-stranded methylated DNA binding1.86E-03
54GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.86E-03
55GO:0043495: protein anchor1.86E-03
56GO:0001053: plastid sigma factor activity1.86E-03
57GO:0051861: glycolipid binding1.86E-03
58GO:0008374: O-acyltransferase activity2.37E-03
59GO:0018685: alkane 1-monooxygenase activity2.37E-03
60GO:0004130: cytochrome-c peroxidase activity2.93E-03
61GO:0016688: L-ascorbate peroxidase activity2.93E-03
62GO:0042578: phosphoric ester hydrolase activity2.93E-03
63GO:0048038: quinone binding3.02E-03
64GO:0051082: unfolded protein binding3.08E-03
65GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.52E-03
66GO:0051753: mannan synthase activity3.52E-03
67GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.52E-03
68GO:0005261: cation channel activity3.52E-03
69GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.52E-03
70GO:0005242: inward rectifier potassium channel activity3.52E-03
71GO:0051920: peroxiredoxin activity3.52E-03
72GO:0005200: structural constituent of cytoskeleton3.88E-03
73GO:0008237: metallopeptidase activity3.88E-03
74GO:0009881: photoreceptor activity4.15E-03
75GO:0019899: enzyme binding4.15E-03
76GO:0004620: phospholipase activity4.15E-03
77GO:0052747: sinapyl alcohol dehydrogenase activity4.82E-03
78GO:0016209: antioxidant activity4.82E-03
79GO:0003843: 1,3-beta-D-glucan synthase activity5.52E-03
80GO:0046872: metal ion binding5.87E-03
81GO:0016207: 4-coumarate-CoA ligase activity6.25E-03
82GO:0016491: oxidoreductase activity6.71E-03
83GO:0030234: enzyme regulator activity7.82E-03
84GO:0005089: Rho guanyl-nucleotide exchange factor activity8.66E-03
85GO:0015386: potassium:proton antiporter activity8.66E-03
86GO:0044183: protein binding involved in protein folding8.66E-03
87GO:0047372: acylglycerol lipase activity8.66E-03
88GO:0000049: tRNA binding9.52E-03
89GO:0045551: cinnamyl-alcohol dehydrogenase activity9.52E-03
90GO:0008378: galactosyltransferase activity9.52E-03
91GO:0051537: 2 iron, 2 sulfur cluster binding1.01E-02
92GO:0004565: beta-galactosidase activity1.04E-02
93GO:0031072: heat shock protein binding1.04E-02
94GO:0005262: calcium channel activity1.04E-02
95GO:0004601: peroxidase activity1.08E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.13E-02
97GO:0008266: poly(U) RNA binding1.13E-02
98GO:0030553: cGMP binding1.23E-02
99GO:0030552: cAMP binding1.23E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.33E-02
101GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.33E-02
102GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.33E-02
103GO:0051536: iron-sulfur cluster binding1.43E-02
104GO:0004857: enzyme inhibitor activity1.43E-02
105GO:0043424: protein histidine kinase binding1.53E-02
106GO:0005216: ion channel activity1.53E-02
107GO:0004176: ATP-dependent peptidase activity1.64E-02
108GO:0033612: receptor serine/threonine kinase binding1.64E-02
109GO:0016874: ligase activity1.69E-02
110GO:0030599: pectinesterase activity1.69E-02
111GO:0004871: signal transducer activity1.89E-02
112GO:0005102: receptor binding2.09E-02
113GO:0004812: aminoacyl-tRNA ligase activity2.09E-02
114GO:0030551: cyclic nucleotide binding2.21E-02
115GO:0004402: histone acetyltransferase activity2.21E-02
116GO:0003924: GTPase activity2.32E-02
117GO:0004519: endonuclease activity2.58E-02
118GO:0000156: phosphorelay response regulator activity2.97E-02
119GO:0016759: cellulose synthase activity3.10E-02
120GO:0008483: transaminase activity3.24E-02
121GO:0016722: oxidoreductase activity, oxidizing metal ions3.24E-02
122GO:0016413: O-acetyltransferase activity3.38E-02
123GO:0016597: amino acid binding3.38E-02
124GO:0009931: calcium-dependent protein serine/threonine kinase activity3.80E-02
125GO:0102483: scopolin beta-glucosidase activity3.95E-02
126GO:0004683: calmodulin-dependent protein kinase activity3.95E-02
127GO:0008236: serine-type peptidase activity4.10E-02
128GO:0005096: GTPase activator activity4.40E-02
129GO:0008168: methyltransferase activity4.60E-02
130GO:0050897: cobalt ion binding4.71E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast2.27E-34
3GO:0009535: chloroplast thylakoid membrane1.16E-21
4GO:0009941: chloroplast envelope1.21E-18
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.74E-14
6GO:0009570: chloroplast stroma6.01E-14
7GO:0009534: chloroplast thylakoid9.53E-11
8GO:0048046: apoplast3.78E-09
9GO:0009579: thylakoid1.39E-08
10GO:0010287: plastoglobule9.40E-05
11GO:0009782: photosystem I antenna complex2.72E-04
12GO:0009344: nitrite reductase complex [NAD(P)H]2.72E-04
13GO:0009523: photosystem II2.95E-04
14GO:0010319: stromule4.51E-04
15GO:0000427: plastid-encoded plastid RNA polymerase complex5.99E-04
16GO:0016021: integral component of membrane8.60E-04
17GO:0030095: chloroplast photosystem II9.06E-04
18GO:0009528: plastid inner membrane9.72E-04
19GO:0030076: light-harvesting complex1.01E-03
20GO:0009654: photosystem II oxygen evolving complex1.37E-03
21GO:0042651: thylakoid membrane1.37E-03
22GO:0005960: glycine cleavage complex1.39E-03
23GO:0015630: microtubule cytoskeleton1.39E-03
24GO:0009532: plastid stroma1.50E-03
25GO:0046658: anchored component of plasma membrane1.80E-03
26GO:0009536: plastid1.82E-03
27GO:0009526: plastid envelope1.86E-03
28GO:0009517: PSII associated light-harvesting complex II1.86E-03
29GO:0009527: plastid outer membrane1.86E-03
30GO:0009505: plant-type cell wall1.91E-03
31GO:0055035: plastid thylakoid membrane2.37E-03
32GO:0009512: cytochrome b6f complex2.37E-03
33GO:0009533: chloroplast stromal thylakoid4.15E-03
34GO:0031359: integral component of chloroplast outer membrane4.15E-03
35GO:0009539: photosystem II reaction center5.52E-03
36GO:0000148: 1,3-beta-D-glucan synthase complex5.52E-03
37GO:0009707: chloroplast outer membrane5.68E-03
38GO:0045298: tubulin complex6.25E-03
39GO:0016324: apical plasma membrane7.82E-03
40GO:0009574: preprophase band1.04E-02
41GO:0016020: membrane1.27E-02
42GO:0005874: microtubule1.36E-02
43GO:0009506: plasmodesma1.54E-02
44GO:0009706: chloroplast inner membrane1.79E-02
45GO:0005886: plasma membrane2.15E-02
46GO:0009543: chloroplast thylakoid lumen2.25E-02
47GO:0005618: cell wall2.25E-02
48GO:0005770: late endosome2.33E-02
49GO:0009522: photosystem I2.45E-02
50GO:0019898: extrinsic component of membrane2.58E-02
51GO:0043231: intracellular membrane-bounded organelle2.62E-02
52GO:0015934: large ribosomal subunit4.71E-02
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Gene type



Gene DE type