Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006592: ornithine biosynthetic process0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0002376: immune system process0.00E+00
4GO:0010360: negative regulation of anion channel activity0.00E+00
5GO:0039694: viral RNA genome replication0.00E+00
6GO:0030149: sphingolipid catabolic process0.00E+00
7GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
8GO:0007141: male meiosis I0.00E+00
9GO:0006793: phosphorus metabolic process0.00E+00
10GO:0048227: plasma membrane to endosome transport0.00E+00
11GO:0001881: receptor recycling0.00E+00
12GO:0016139: glycoside catabolic process0.00E+00
13GO:0072722: response to amitrole0.00E+00
14GO:0046686: response to cadmium ion9.27E-06
15GO:0046685: response to arsenic-containing substance1.04E-05
16GO:0045454: cell redox homeostasis2.00E-05
17GO:0010150: leaf senescence1.65E-04
18GO:0071586: CAAX-box protein processing2.53E-04
19GO:1990641: response to iron ion starvation2.53E-04
20GO:0080173: male-female gamete recognition during double fertilization2.53E-04
21GO:0010482: regulation of epidermal cell division2.53E-04
22GO:1902361: mitochondrial pyruvate transmembrane transport2.53E-04
23GO:0010265: SCF complex assembly2.53E-04
24GO:0080120: CAAX-box protein maturation2.53E-04
25GO:0019521: D-gluconate metabolic process5.59E-04
26GO:0006101: citrate metabolic process5.59E-04
27GO:0006850: mitochondrial pyruvate transport5.59E-04
28GO:0019752: carboxylic acid metabolic process5.59E-04
29GO:1902000: homogentisate catabolic process5.59E-04
30GO:0008535: respiratory chain complex IV assembly5.59E-04
31GO:0060919: auxin influx5.59E-04
32GO:0019441: tryptophan catabolic process to kynurenine5.59E-04
33GO:0051592: response to calcium ion5.59E-04
34GO:0031648: protein destabilization5.59E-04
35GO:0071395: cellular response to jasmonic acid stimulus5.59E-04
36GO:0009407: toxin catabolic process7.26E-04
37GO:0009738: abscisic acid-activated signaling pathway7.36E-04
38GO:0009790: embryo development7.79E-04
39GO:0007034: vacuolar transport8.19E-04
40GO:0009410: response to xenobiotic stimulus9.07E-04
41GO:0010272: response to silver ion9.07E-04
42GO:0045039: protein import into mitochondrial inner membrane9.07E-04
43GO:0009072: aromatic amino acid family metabolic process9.07E-04
44GO:0048281: inflorescence morphogenesis9.07E-04
45GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening9.07E-04
46GO:0008333: endosome to lysosome transport9.07E-04
47GO:0010359: regulation of anion channel activity9.07E-04
48GO:0010288: response to lead ion9.07E-04
49GO:0010351: lithium ion transport9.07E-04
50GO:0034976: response to endoplasmic reticulum stress1.01E-03
51GO:0006882: cellular zinc ion homeostasis1.29E-03
52GO:0001676: long-chain fatty acid metabolic process1.29E-03
53GO:0010116: positive regulation of abscisic acid biosynthetic process1.29E-03
54GO:0048194: Golgi vesicle budding1.29E-03
55GO:0033617: mitochondrial respiratory chain complex IV assembly1.29E-03
56GO:0009814: defense response, incompatible interaction1.48E-03
57GO:0009737: response to abscisic acid1.61E-03
58GO:0051567: histone H3-K9 methylation1.73E-03
59GO:0051205: protein insertion into membrane1.73E-03
60GO:0080142: regulation of salicylic acid biosynthetic process1.73E-03
61GO:0009697: salicylic acid biosynthetic process2.21E-03
62GO:0006564: L-serine biosynthetic process2.21E-03
63GO:0006097: glyoxylate cycle2.21E-03
64GO:0006461: protein complex assembly2.21E-03
65GO:0006623: protein targeting to vacuole2.54E-03
66GO:0048232: male gamete generation2.72E-03
67GO:0070814: hydrogen sulfide biosynthetic process2.72E-03
68GO:1902456: regulation of stomatal opening2.72E-03
69GO:0010315: auxin efflux2.72E-03
70GO:0018258: protein O-linked glycosylation via hydroxyproline2.72E-03
71GO:0002238: response to molecule of fungal origin2.72E-03
72GO:0010405: arabinogalactan protein metabolic process2.72E-03
73GO:0018105: peptidyl-serine phosphorylation2.80E-03
74GO:0010200: response to chitin2.83E-03
75GO:0007264: small GTPase mediated signal transduction2.90E-03
76GO:0042742: defense response to bacterium3.16E-03
77GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.27E-03
78GO:0043090: amino acid import3.86E-03
79GO:0071446: cellular response to salicylic acid stimulus3.86E-03
80GO:1900056: negative regulation of leaf senescence3.86E-03
81GO:0030026: cellular manganese ion homeostasis3.86E-03
82GO:1902074: response to salt3.86E-03
83GO:0050790: regulation of catalytic activity3.86E-03
84GO:0009615: response to virus3.92E-03
85GO:0009816: defense response to bacterium, incompatible interaction4.15E-03
86GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.48E-03
87GO:0009819: drought recovery4.48E-03
88GO:0043068: positive regulation of programmed cell death4.48E-03
89GO:0006605: protein targeting4.48E-03
90GO:2000070: regulation of response to water deprivation4.48E-03
91GO:0006102: isocitrate metabolic process4.48E-03
92GO:0009651: response to salt stress4.73E-03
93GO:0006526: arginine biosynthetic process5.13E-03
94GO:0030968: endoplasmic reticulum unfolded protein response5.13E-03
95GO:0043562: cellular response to nitrogen levels5.13E-03
96GO:0009051: pentose-phosphate shunt, oxidative branch5.81E-03
97GO:0009821: alkaloid biosynthetic process5.81E-03
98GO:0051865: protein autoubiquitination5.81E-03
99GO:0006098: pentose-phosphate shunt5.81E-03
100GO:0010112: regulation of systemic acquired resistance5.81E-03
101GO:0010043: response to zinc ion5.91E-03
102GO:0006952: defense response6.15E-03
103GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.22E-03
104GO:0010205: photoinhibition6.52E-03
105GO:0043067: regulation of programmed cell death6.52E-03
106GO:0030042: actin filament depolymerization6.52E-03
107GO:0048354: mucilage biosynthetic process involved in seed coat development6.52E-03
108GO:0009617: response to bacterium6.76E-03
109GO:0055062: phosphate ion homeostasis7.26E-03
110GO:0051026: chiasma assembly7.26E-03
111GO:0000103: sulfate assimilation7.26E-03
112GO:0006032: chitin catabolic process7.26E-03
113GO:0043069: negative regulation of programmed cell death7.26E-03
114GO:0006631: fatty acid metabolic process7.70E-03
115GO:0072593: reactive oxygen species metabolic process8.04E-03
116GO:0000272: polysaccharide catabolic process8.04E-03
117GO:0048765: root hair cell differentiation8.04E-03
118GO:0055114: oxidation-reduction process8.17E-03
119GO:0009734: auxin-activated signaling pathway8.19E-03
120GO:0012501: programmed cell death8.83E-03
121GO:0015706: nitrate transport8.83E-03
122GO:0009636: response to toxic substance9.39E-03
123GO:0006006: glucose metabolic process9.66E-03
124GO:0009735: response to cytokinin1.01E-02
125GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.01E-02
126GO:0010540: basipetal auxin transport1.05E-02
127GO:0002237: response to molecule of bacterial origin1.05E-02
128GO:0006979: response to oxidative stress1.07E-02
129GO:0006486: protein glycosylation1.13E-02
130GO:0010167: response to nitrate1.14E-02
131GO:0070588: calcium ion transmembrane transport1.14E-02
132GO:0010053: root epidermal cell differentiation1.14E-02
133GO:0035556: intracellular signal transduction1.26E-02
134GO:0000027: ribosomal large subunit assembly1.32E-02
135GO:0009863: salicylic acid mediated signaling pathway1.32E-02
136GO:2000377: regulation of reactive oxygen species metabolic process1.32E-02
137GO:0046777: protein autophosphorylation1.35E-02
138GO:0006468: protein phosphorylation1.41E-02
139GO:0006874: cellular calcium ion homeostasis1.42E-02
140GO:0010026: trichome differentiation1.42E-02
141GO:0009695: jasmonic acid biosynthetic process1.42E-02
142GO:0031408: oxylipin biosynthetic process1.52E-02
143GO:0016998: cell wall macromolecule catabolic process1.52E-02
144GO:0015031: protein transport1.59E-02
145GO:0007131: reciprocal meiotic recombination1.62E-02
146GO:0007005: mitochondrion organization1.62E-02
147GO:0031348: negative regulation of defense response1.62E-02
148GO:0071456: cellular response to hypoxia1.62E-02
149GO:0006012: galactose metabolic process1.72E-02
150GO:0001944: vasculature development1.72E-02
151GO:0009625: response to insect1.72E-02
152GO:0010091: trichome branching1.83E-02
153GO:0019722: calcium-mediated signaling1.83E-02
154GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.94E-02
155GO:0042147: retrograde transport, endosome to Golgi1.94E-02
156GO:0042631: cellular response to water deprivation2.05E-02
157GO:0010501: RNA secondary structure unwinding2.05E-02
158GO:0010087: phloem or xylem histogenesis2.05E-02
159GO:0006520: cellular amino acid metabolic process2.16E-02
160GO:0009646: response to absence of light2.27E-02
161GO:0006814: sodium ion transport2.27E-02
162GO:0042752: regulation of circadian rhythm2.27E-02
163GO:0071554: cell wall organization or biogenesis2.51E-02
164GO:0000302: response to reactive oxygen species2.51E-02
165GO:0010193: response to ozone2.51E-02
166GO:0009630: gravitropism2.63E-02
167GO:0030163: protein catabolic process2.75E-02
168GO:0006464: cellular protein modification process2.87E-02
169GO:0006310: DNA recombination2.87E-02
170GO:0007166: cell surface receptor signaling pathway3.19E-02
171GO:0001666: response to hypoxia3.26E-02
172GO:0009607: response to biotic stimulus3.39E-02
173GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.39E-02
174GO:0009627: systemic acquired resistance3.52E-02
175GO:0042128: nitrate assimilation3.52E-02
176GO:0008219: cell death3.93E-02
177GO:0048767: root hair elongation4.08E-02
178GO:0009611: response to wounding4.25E-02
179GO:0010119: regulation of stomatal movement4.36E-02
180GO:0006865: amino acid transport4.51E-02
181GO:0009860: pollen tube growth4.63E-02
182GO:0009867: jasmonic acid mediated signaling pathway4.66E-02
183GO:0007049: cell cycle4.79E-02
184GO:0006099: tricarboxylic acid cycle4.80E-02
185GO:0009723: response to ethylene4.96E-02
RankGO TermAdjusted P value
1GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
2GO:0050220: prostaglandin-E synthase activity0.00E+00
3GO:0008777: acetylornithine deacetylase activity0.00E+00
4GO:0016034: maleylacetoacetate isomerase activity0.00E+00
5GO:0005516: calmodulin binding1.88E-05
6GO:0004683: calmodulin-dependent protein kinase activity4.94E-05
7GO:0030976: thiamine pyrophosphate binding1.02E-04
8GO:0004364: glutathione transferase activity1.38E-04
9GO:0102391: decanoate--CoA ligase activity1.41E-04
10GO:0016831: carboxy-lyase activity1.85E-04
11GO:0043295: glutathione binding1.85E-04
12GO:0004467: long-chain fatty acid-CoA ligase activity1.85E-04
13GO:0005509: calcium ion binding2.01E-04
14GO:2001227: quercitrin binding2.53E-04
15GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.53E-04
16GO:0004321: fatty-acyl-CoA synthase activity2.53E-04
17GO:2001147: camalexin binding2.53E-04
18GO:0009931: calcium-dependent protein serine/threonine kinase activity5.27E-04
19GO:0004617: phosphoglycerate dehydrogenase activity5.59E-04
20GO:0003994: aconitate hydratase activity5.59E-04
21GO:0046593: mandelonitrile lyase activity5.59E-04
22GO:0004061: arylformamidase activity5.59E-04
23GO:0043141: ATP-dependent 5'-3' DNA helicase activity5.59E-04
24GO:0015036: disulfide oxidoreductase activity5.59E-04
25GO:0050736: O-malonyltransferase activity5.59E-04
26GO:0048531: beta-1,3-galactosyltransferase activity5.59E-04
27GO:0032791: lead ion binding5.59E-04
28GO:0008794: arsenate reductase (glutaredoxin) activity5.62E-04
29GO:0005093: Rab GDP-dissociation inhibitor activity9.07E-04
30GO:0008430: selenium binding9.07E-04
31GO:0004557: alpha-galactosidase activity9.07E-04
32GO:0050833: pyruvate transmembrane transporter activity9.07E-04
33GO:0004781: sulfate adenylyltransferase (ATP) activity9.07E-04
34GO:0016805: dipeptidase activity9.07E-04
35GO:0052692: raffinose alpha-galactosidase activity9.07E-04
36GO:0031176: endo-1,4-beta-xylanase activity1.29E-03
37GO:0004737: pyruvate decarboxylase activity1.73E-03
38GO:0004345: glucose-6-phosphate dehydrogenase activity1.73E-03
39GO:0015369: calcium:proton antiporter activity1.73E-03
40GO:0010328: auxin influx transmembrane transporter activity1.73E-03
41GO:0000062: fatty-acyl-CoA binding1.73E-03
42GO:0004301: epoxide hydrolase activity1.73E-03
43GO:0015368: calcium:cation antiporter activity1.73E-03
44GO:0003756: protein disulfide isomerase activity1.75E-03
45GO:0031386: protein tag2.21E-03
46GO:0005524: ATP binding2.42E-03
47GO:1990714: hydroxyproline O-galactosyltransferase activity2.72E-03
48GO:0031593: polyubiquitin binding2.72E-03
49GO:0047714: galactolipase activity2.72E-03
50GO:0015035: protein disulfide oxidoreductase activity2.80E-03
51GO:0005515: protein binding2.83E-03
52GO:0061630: ubiquitin protein ligase activity2.90E-03
53GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.27E-03
54GO:0004012: phospholipid-translocating ATPase activity3.27E-03
55GO:0004602: glutathione peroxidase activity3.27E-03
56GO:0003978: UDP-glucose 4-epimerase activity3.27E-03
57GO:0004656: procollagen-proline 4-dioxygenase activity3.27E-03
58GO:0008235: metalloexopeptidase activity3.86E-03
59GO:0008320: protein transmembrane transporter activity3.86E-03
60GO:0015491: cation:cation antiporter activity4.48E-03
61GO:0008135: translation factor activity, RNA binding5.13E-03
62GO:0008970: phosphatidylcholine 1-acylhydrolase activity5.13E-03
63GO:0016207: 4-coumarate-CoA ligase activity5.81E-03
64GO:0071949: FAD binding5.81E-03
65GO:0003678: DNA helicase activity5.81E-03
66GO:0050897: cobalt ion binding5.91E-03
67GO:0004743: pyruvate kinase activity6.52E-03
68GO:0030955: potassium ion binding6.52E-03
69GO:0016844: strictosidine synthase activity6.52E-03
70GO:0015112: nitrate transmembrane transporter activity6.52E-03
71GO:0004713: protein tyrosine kinase activity7.26E-03
72GO:0004568: chitinase activity7.26E-03
73GO:0005543: phospholipid binding8.04E-03
74GO:0004177: aminopeptidase activity8.04E-03
75GO:0008559: xenobiotic-transporting ATPase activity8.04E-03
76GO:0008378: galactosyltransferase activity8.83E-03
77GO:0000287: magnesium ion binding9.19E-03
78GO:0005388: calcium-transporting ATPase activity9.66E-03
79GO:0000175: 3'-5'-exoribonuclease activity9.66E-03
80GO:0010329: auxin efflux transmembrane transporter activity9.66E-03
81GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.66E-03
82GO:0004175: endopeptidase activity1.05E-02
83GO:0004535: poly(A)-specific ribonuclease activity1.05E-02
84GO:0008061: chitin binding1.14E-02
85GO:0004190: aspartic-type endopeptidase activity1.14E-02
86GO:0031418: L-ascorbic acid binding1.32E-02
87GO:0003954: NADH dehydrogenase activity1.32E-02
88GO:0005528: FK506 binding1.32E-02
89GO:0004540: ribonuclease activity1.52E-02
90GO:0004298: threonine-type endopeptidase activity1.52E-02
91GO:0019706: protein-cysteine S-palmitoyltransferase activity1.52E-02
92GO:0008408: 3'-5' exonuclease activity1.52E-02
93GO:0016758: transferase activity, transferring hexosyl groups1.97E-02
94GO:0005507: copper ion binding1.98E-02
95GO:0016301: kinase activity2.19E-02
96GO:0009055: electron carrier activity2.22E-02
97GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.60E-02
98GO:0004197: cysteine-type endopeptidase activity2.63E-02
99GO:0008483: transaminase activity3.00E-02
100GO:0008237: metallopeptidase activity3.00E-02
101GO:0043565: sequence-specific DNA binding3.04E-02
102GO:0008194: UDP-glycosyltransferase activity3.12E-02
103GO:0016413: O-acetyltransferase activity3.13E-02
104GO:0016597: amino acid binding3.13E-02
105GO:0042802: identical protein binding3.54E-02
106GO:0004806: triglyceride lipase activity3.66E-02
107GO:0004004: ATP-dependent RNA helicase activity3.66E-02
108GO:0016787: hydrolase activity3.82E-02
109GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.93E-02
110GO:0005096: GTPase activator activity4.08E-02
111GO:0004222: metalloendopeptidase activity4.22E-02
112GO:0004601: peroxidase activity4.30E-02
113GO:0030145: manganese ion binding4.36E-02
114GO:0003746: translation elongation factor activity4.66E-02
115GO:0003697: single-stranded DNA binding4.66E-02
116GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.66E-02
117GO:0043531: ADP binding4.71E-02
118GO:0016491: oxidoreductase activity4.92E-02
119GO:0004712: protein serine/threonine/tyrosine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0019034: viral replication complex0.00E+00
2GO:0019822: P4 peroxisome0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005829: cytosol3.79E-07
5GO:0005783: endoplasmic reticulum5.40E-06
6GO:0005794: Golgi apparatus2.27E-04
7GO:0030014: CCR4-NOT complex2.53E-04
8GO:0005886: plasma membrane3.05E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane5.59E-04
10GO:0031314: extrinsic component of mitochondrial inner membrane5.59E-04
11GO:0030134: ER to Golgi transport vesicle5.59E-04
12GO:0005789: endoplasmic reticulum membrane7.29E-04
13GO:0005773: vacuole8.15E-04
14GO:0030139: endocytic vesicle9.07E-04
15GO:0031461: cullin-RING ubiquitin ligase complex1.29E-03
16GO:0030904: retromer complex2.72E-03
17GO:0005771: multivesicular body2.72E-03
18GO:0005801: cis-Golgi network3.27E-03
19GO:0005778: peroxisomal membrane3.49E-03
20GO:0000794: condensed nuclear chromosome3.86E-03
21GO:0005777: peroxisome3.91E-03
22GO:0005788: endoplasmic reticulum lumen4.15E-03
23GO:0031305: integral component of mitochondrial inner membrane4.48E-03
24GO:0009514: glyoxysome5.13E-03
25GO:0019773: proteasome core complex, alpha-subunit complex5.13E-03
26GO:0000326: protein storage vacuole5.13E-03
27GO:0005819: spindle7.07E-03
28GO:0017119: Golgi transport complex7.26E-03
29GO:0031902: late endosome membrane7.70E-03
30GO:0031307: integral component of mitochondrial outer membrane8.83E-03
31GO:0005764: lysosome1.05E-02
32GO:0030176: integral component of endoplasmic reticulum membrane1.14E-02
33GO:0043234: protein complex1.23E-02
34GO:0005839: proteasome core complex1.52E-02
35GO:0016021: integral component of membrane1.62E-02
36GO:0015629: actin cytoskeleton1.72E-02
37GO:0005743: mitochondrial inner membrane1.85E-02
38GO:0000790: nuclear chromatin1.94E-02
39GO:0005623: cell2.07E-02
40GO:0009524: phragmoplast2.13E-02
41GO:0030529: intracellular ribonucleoprotein complex3.26E-02
42GO:0048046: apoplast3.77E-02
43GO:0000151: ubiquitin ligase complex3.93E-02
44GO:0005737: cytoplasm4.28E-02
45GO:0009505: plant-type cell wall4.59E-02
46GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.71E-02
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Gene type



Gene DE type